Wall clock time and date at job start Sat Apr 11 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46964 * 2 1 4 4 N 1.46900 * 109.47322 * 119.99720 * 2 1 3 5 5 C 1.48672 * 111.10845 * 287.69329 * 4 2 1 6 6 C 1.54384 * 104.67177 * 201.09572 * 5 4 2 7 7 C 1.54260 * 105.05941 * 23.77226 * 6 5 4 8 8 C 1.48559 * 111.00024 * 172.27518 * 4 2 1 9 9 H 1.08993 * 110.41259 * 40.14368 * 8 4 2 10 10 C 1.50703 * 110.40764 * 277.81823 * 8 4 2 11 11 O 1.21273 * 120.00625 * 1.65037 * 10 8 4 12 12 N 1.34780 * 119.99543 * 181.65230 * 10 8 4 13 13 C 1.46504 * 119.99796 * 185.00400 * 12 10 8 14 14 C 1.53003 * 109.49470 * 297.42292 * 13 12 10 15 15 O 1.42907 * 109.46843 * 305.84272 * 14 13 12 16 16 C 1.53105 * 109.51672 * 57.48755 * 13 12 10 17 17 C 1.53042 * 109.50101 * 58.62997 * 16 13 12 18 18 C 1.53191 * 109.34012 * 61.34813 * 17 16 13 19 19 N 1.46921 * 108.77661 * 305.34948 * 18 17 16 20 20 C 1.36932 * 120.62948 * 233.62955 * 19 18 17 21 21 H 1.08009 * 120.00443 * 154.64360 * 20 19 18 22 22 C 1.38813 * 120.00089 * 334.64473 * 20 19 18 23 23 N 1.31618 * 120.00156 * 160.66884 * 22 20 19 24 24 Si 1.86800 * 119.99930 * 340.67225 * 22 20 19 25 25 H 1.48501 * 109.46946 * 95.04038 * 24 22 20 26 26 H 1.48497 * 109.47127 * 215.03824 * 24 22 20 27 27 H 1.48495 * 109.47005 * 335.03725 * 24 22 20 28 28 C 1.46927 * 118.73981 * 53.60431 * 19 18 17 29 29 H 1.09002 * 109.47442 * 299.99819 * 1 2 3 30 30 H 1.08997 * 109.47261 * 60.00221 * 1 2 3 31 31 H 1.08998 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47442 * 240.00181 * 2 1 3 33 33 H 1.09000 * 109.47199 * 172.14866 * 3 2 1 34 34 H 1.09004 * 109.46959 * 292.14975 * 3 2 1 35 35 H 1.08999 * 109.47208 * 52.14592 * 3 2 1 36 36 H 1.09001 * 110.44370 * 82.25577 * 5 4 2 37 37 H 1.08994 * 110.30855 * 319.86812 * 5 4 2 38 38 H 1.09007 * 110.32137 * 264.87546 * 6 5 4 39 39 H 1.08996 * 110.32009 * 142.66906 * 6 5 4 40 40 H 1.09003 * 110.32173 * 241.10463 * 7 6 5 41 41 H 1.08995 * 110.40836 * 118.94116 * 7 6 5 42 42 H 0.97005 * 120.00134 * 5.00014 * 12 10 8 43 43 H 1.08997 * 109.47218 * 65.84628 * 14 13 12 44 44 H 1.08997 * 109.46874 * 185.84708 * 14 13 12 45 45 H 0.96708 * 113.99255 * 180.02562 * 15 14 13 46 46 H 1.09000 * 109.50453 * 298.60578 * 16 13 12 47 47 H 1.09003 * 109.45022 * 178.62541 * 16 13 12 48 48 H 1.08994 * 109.49879 * 301.37803 * 17 16 13 49 49 H 1.08999 * 109.49350 * 181.31636 * 17 16 13 50 50 H 1.09006 * 109.58494 * 65.13281 * 18 17 16 51 51 H 1.08997 * 109.58763 * 185.55265 * 18 17 16 52 52 H 0.97002 * 120.00517 * 180.02562 * 23 22 20 53 53 H 1.08997 * 109.58395 * 66.18295 * 28 19 18 54 54 H 1.09004 * 109.58585 * 186.46527 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.8008 0.1293 2.4189 6 6 2.8032 -0.4291 3.4519 7 6 3.9163 -1.0903 2.6132 8 6 3.4929 -0.8758 1.1442 9 1 3.9717 0.0145 0.7366 10 6 3.8412 -2.0849 0.3149 11 8 2.9622 -2.7294 -0.2168 12 7 5.1298 -2.4502 0.1642 13 6 5.4774 -3.5580 -0.7292 14 6 4.8370 -4.8489 -0.2151 15 8 5.2126 -5.0569 1.1480 16 6 4.9623 -3.2587 -2.1396 17 6 5.5778 -1.9505 -2.6414 18 6 7.1013 -2.0978 -2.7038 19 7 7.5893 -2.5271 -1.3862 20 6 8.5744 -1.8251 -0.7444 21 1 8.6515 -1.8640 0.3322 22 6 9.4742 -1.0636 -1.4775 23 7 10.1618 -0.1087 -0.8879 24 14 9.7090 -1.3940 -3.3010 25 1 8.8415 -0.4790 -4.0856 26 1 11.1297 -1.1639 -3.6668 27 1 9.3425 -2.8015 -3.6002 28 6 6.9998 -3.7235 -0.7700 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1209 1.4458 0.1404 34 1 1.7957 1.9142 -0.9519 35 1 1.5665 1.9953 0.8114 36 1 0.7787 0.0116 2.7790 37 1 2.0132 1.1781 2.2116 38 1 2.3181 -1.1694 4.0882 39 1 3.2141 0.3797 4.0560 40 1 3.9777 -2.1551 2.8379 41 1 4.8745 -0.6076 2.8054 42 1 5.8270 -1.9795 0.6473 43 1 3.7522 -4.7691 -0.2849 44 1 5.1791 -5.6896 -0.8186 45 1 4.8419 -5.8595 1.5399 46 1 3.8766 -3.1644 -2.1180 47 1 5.2427 -4.0722 -2.8087 48 1 5.3182 -1.1410 -1.9592 49 1 5.1930 -1.7254 -3.6361 50 1 7.3659 -2.8446 -3.4525 51 1 7.5506 -1.1399 -2.9657 52 1 10.7902 0.4238 -1.4002 53 1 7.2561 -4.6028 -1.3609 54 1 7.3841 -3.8396 0.2434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279481093.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:02 Heat of formation + Delta-G solvation = -68.816153 kcal Electronic energy + Delta-G solvation = -33278.249204 eV Core-core repulsion = 29250.021515 eV Total energy + Delta-G solvation = -4028.227689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.73263 -40.37497 -38.55376 -37.42464 -35.52459 -35.34167 -33.99271 -32.71341 -31.94377 -30.31913 -29.62933 -28.16344 -27.41055 -26.80258 -24.51158 -23.77759 -23.01740 -22.62452 -21.37839 -20.26530 -20.05829 -18.74484 -18.31578 -18.12456 -17.50497 -17.27978 -16.75420 -16.19361 -15.99315 -15.65755 -15.50122 -15.28101 -15.12744 -14.90593 -14.79036 -14.63367 -14.39093 -14.09598 -13.89821 -13.85490 -13.65550 -13.36194 -13.30474 -13.25173 -12.96751 -12.66689 -12.55038 -12.49252 -12.32896 -12.17821 -12.13469 -12.03367 -11.98554 -11.68398 -11.65194 -11.42988 -11.34785 -11.33024 -10.97219 -10.73157 -10.28055 -9.76918 -9.32995 -8.95190 -8.12895 -5.44452 1.30455 1.42738 1.50031 1.82413 2.21288 2.43036 3.05452 3.10634 3.26923 3.36407 3.60146 3.62607 3.86391 3.92675 3.98182 4.05587 4.12473 4.13231 4.20713 4.22399 4.32327 4.38059 4.42285 4.56076 4.57040 4.60128 4.69002 4.69698 4.75486 4.78448 4.79868 4.82894 4.89212 4.93676 4.94377 4.99199 5.00058 5.09042 5.09740 5.11404 5.17281 5.22857 5.32461 5.34952 5.39271 5.74101 5.85235 5.88168 6.12580 6.14057 6.78406 6.89549 6.95066 7.45642 7.62733 8.02215 9.06039 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.004178 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.653888 B = 6699.875323 C = 7207.862030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.066 3.934 3 C -0.184 4.184 4 N -0.491 5.491 5 C 0.023 3.977 6 C -0.116 4.116 7 C -0.112 4.112 8 C 0.040 3.960 9 H 0.073 0.927 10 C 0.529 3.471 11 O -0.556 6.556 12 N -0.694 5.694 13 C 0.168 3.832 14 C 0.078 3.922 15 O -0.578 6.578 16 C -0.115 4.115 17 C -0.119 4.119 18 C 0.120 3.880 19 N -0.612 5.612 20 C -0.238 4.238 21 H 0.061 0.939 22 C -0.033 4.033 23 N -0.956 5.956 24 Si 0.943 3.057 25 H -0.283 1.283 26 H -0.317 1.317 27 H -0.257 1.257 28 C 0.154 3.846 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.400 0.600 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.391 0.609 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.046 0.954 49 H 0.075 0.925 50 H 0.037 0.963 51 H 0.048 0.952 52 H 0.259 0.741 53 H 0.049 0.951 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.849 -2.756 4.200 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.043 4.043 3 C -0.242 4.242 4 N -0.215 5.215 5 C -0.104 4.104 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.072 4.072 9 H 0.091 0.909 10 C 0.315 3.685 11 O -0.435 6.435 12 N -0.343 5.343 13 C 0.080 3.920 14 C -0.002 4.002 15 O -0.385 6.385 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.005 4.005 19 N -0.336 5.336 20 C -0.367 4.367 21 H 0.078 0.922 22 C -0.227 4.227 23 N -0.602 5.602 24 Si 0.773 3.227 25 H -0.211 1.211 26 H -0.247 1.247 27 H -0.181 1.181 28 C 0.029 3.971 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.234 0.766 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.239 0.761 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.055 0.945 51 H 0.066 0.934 52 H 0.068 0.932 53 H 0.067 0.933 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.328 -3.081 3.704 19.920 hybrid contribution 1.336 0.620 -0.781 1.667 sum -17.992 -2.461 2.923 18.394 Atomic orbital electron populations 1.21656 0.92651 1.01878 1.02357 1.21778 0.97208 0.92394 0.92892 1.22472 1.00746 0.97573 1.03406 1.65337 1.09367 1.43765 1.03034 1.23365 1.00898 0.96396 0.89728 1.22280 0.95031 1.00710 0.97331 1.22233 0.99816 1.01901 0.91134 1.22617 0.91668 0.95660 0.97266 0.90948 1.20413 0.82032 0.85608 0.80409 1.90544 1.48112 1.55092 1.49716 1.45791 1.07553 1.34931 1.46069 1.20866 0.95831 0.85764 0.89522 1.22453 0.98756 0.95828 0.83137 1.86463 1.76387 1.49354 1.26297 1.21714 1.01018 0.98003 0.94578 1.21795 0.95469 0.97706 1.00819 1.21429 0.94111 0.97658 0.87269 1.44397 1.41609 1.28642 1.18954 1.18840 1.05188 1.21420 0.91287 0.92163 1.25756 0.97596 0.98022 1.01358 1.69932 1.30512 1.21883 1.37895 0.86011 0.74720 0.79267 0.82655 1.21078 1.24698 1.18120 1.21183 0.89678 0.88413 0.97864 0.91607 0.91367 0.93135 0.92486 0.93698 0.91348 0.90394 0.88881 0.91898 0.90461 0.89392 0.91645 0.90169 0.76612 0.92676 0.91750 0.76064 0.90717 0.90154 0.93546 0.90658 0.94488 0.93411 0.93194 0.93271 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.28 71.98 0.67 -1.83 16 2 C 0.07 1.57 2.76 44.92 0.12 1.70 16 3 C -0.18 -3.74 8.14 71.98 0.59 -3.16 16 4 N -0.49 -12.34 4.61 -835.69 -3.86 -16.20 16 5 C 0.02 0.44 5.57 86.43 0.48 0.92 16 6 C -0.12 -2.13 7.00 31.49 0.22 -1.90 16 7 C -0.11 -2.67 6.48 31.49 0.20 -2.47 16 8 C 0.04 1.09 2.54 44.32 0.11 1.21 16 9 H 0.07 2.08 6.01 -2.39 -0.01 2.06 16 10 C 0.53 17.15 6.17 87.66 0.54 17.69 16 11 O -0.56 -20.08 12.13 -3.01 -0.04 -20.12 16 12 N -0.69 -23.09 3.90 -422.46 -1.65 -24.74 16 13 C 0.17 5.45 0.45 3.70 0.00 5.45 16 14 C 0.08 2.16 5.66 71.98 0.41 2.57 16 15 O -0.58 -15.69 13.09 -148.98 -1.95 -17.64 16 16 C -0.11 -3.62 4.44 30.64 0.14 -3.48 16 17 C -0.12 -4.14 5.93 30.67 0.18 -3.95 16 18 C 0.12 4.96 4.16 86.36 0.36 5.32 16 19 N -0.61 -27.20 2.73 -699.10 -1.91 -29.11 16 20 C -0.24 -12.78 10.07 84.03 0.85 -11.93 16 21 H 0.06 3.51 8.04 -2.91 -0.02 3.49 16 22 C -0.03 -1.85 5.28 84.86 0.45 -1.41 16 23 N -0.96 -58.50 13.97 21.65 0.30 -58.20 16 24 Si 0.94 45.85 24.30 68.60 1.67 47.51 16 25 H -0.28 -13.26 6.69 99.48 0.67 -12.59 16 26 H -0.32 -15.93 7.11 99.48 0.71 -15.22 16 27 H -0.26 -11.81 6.26 99.48 0.62 -11.18 16 28 C 0.15 5.74 5.07 86.36 0.44 6.18 16 29 H 0.06 1.08 7.37 -2.39 -0.02 1.06 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.69 7.36 -2.39 -0.02 1.67 16 33 H 0.04 1.04 6.14 -2.39 -0.01 1.02 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.08 1.32 6.41 -2.39 -0.02 1.30 16 36 H 0.09 1.56 7.82 -2.39 -0.02 1.54 16 37 H 0.06 1.09 5.37 -2.39 -0.01 1.08 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.72 7.85 -2.39 -0.02 1.70 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.40 14.38 8.44 -92.70 -0.78 13.60 16 43 H 0.06 1.67 6.37 -2.39 -0.02 1.66 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.39 6.90 9.12 -74.05 -0.68 6.22 16 46 H 0.07 2.46 6.21 -2.39 -0.01 2.44 16 47 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.05 1.75 7.46 -2.39 -0.02 1.74 16 49 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.04 1.47 6.92 -2.38 -0.02 1.46 16 51 H 0.05 2.20 4.18 -2.39 -0.01 2.19 16 52 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 53 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 54 H 0.06 2.52 7.79 -2.38 -0.02 2.50 16 Total: -1.00 -67.33 392.40 -2.35 -69.67 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -0.67 Total: 37.89 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.76 Total: 10.91 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -7.11 Total: -128.24 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.99 Total: -37.75 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.51 kcal Total: -67.33 -2.35 -69.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279481093.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.856 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds