Wall clock time and date at job start Sat Apr 11 2020 05:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47146 * 2 1 4 4 H 1.09001 * 109.46737 * 55.00443 * 3 2 1 5 5 C 1.52995 * 109.47163 * 295.00226 * 3 2 1 6 6 C 1.53001 * 109.47146 * 175.00168 * 3 2 1 7 7 H 1.09001 * 109.47078 * 60.00484 * 6 3 2 8 8 C 1.52995 * 109.47137 * 300.00074 * 6 3 2 9 9 C 1.50698 * 109.47159 * 180.02562 * 6 3 2 10 10 O 1.21288 * 120.00137 * 359.97438 * 9 6 3 11 11 N 1.34776 * 120.00040 * 180.02562 * 9 6 3 12 12 C 1.46501 * 119.99743 * 179.97438 * 11 9 6 13 13 C 1.53001 * 109.46862 * 179.97438 * 12 11 9 14 14 H 1.08997 * 112.90610 * 316.25144 * 13 12 11 15 15 C 1.53788 * 113.61525 * 87.50082 * 13 12 11 16 16 C 1.53782 * 87.07978 * 139.97882 * 15 13 12 17 17 H 1.08998 * 113.69322 * 220.00838 * 16 15 13 18 18 N 1.46905 * 113.61156 * 89.11783 * 16 15 13 19 19 C 1.46901 * 110.99870 * 107.50274 * 18 16 15 20 20 C 1.50697 * 109.46943 * 180.02562 * 19 18 16 21 21 O 1.21292 * 120.00024 * 359.97438 * 20 19 18 22 22 N 1.34776 * 119.99767 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99759 * 179.97438 * 22 20 19 24 24 H 1.08000 * 120.00171 * 359.97438 * 23 22 20 25 25 C 1.38951 * 120.00074 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00414 * 179.97438 * 25 23 22 27 27 Si 1.86798 * 119.99992 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47309 * 89.99614 * 27 25 23 29 29 H 1.48496 * 109.47518 * 209.99740 * 27 25 23 30 30 H 1.48507 * 109.47020 * 329.99990 * 27 25 23 31 31 C 1.53780 * 87.08315 * 334.56701 * 16 15 13 32 32 H 1.09005 * 109.46829 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46789 * 299.99543 * 1 2 3 34 34 H 1.08994 * 109.47096 * 59.99705 * 1 2 3 35 35 H 1.09007 * 109.47101 * 240.00441 * 2 1 3 36 36 H 1.08994 * 109.47551 * 120.00573 * 2 1 3 37 37 H 1.08998 * 109.47105 * 60.00030 * 5 3 2 38 38 H 1.09005 * 109.47387 * 179.97438 * 5 3 2 39 39 H 1.09001 * 109.47471 * 299.99767 * 5 3 2 40 40 H 1.09001 * 109.47471 * 300.00169 * 8 6 3 41 41 H 1.09005 * 109.47387 * 60.00197 * 8 6 3 42 42 H 1.09004 * 109.47448 * 180.02562 * 8 6 3 43 43 H 0.96999 * 120.00108 * 0.02562 * 11 9 6 44 44 H 1.09003 * 109.47625 * 59.99965 * 12 11 9 45 45 H 1.09007 * 109.47082 * 299.99291 * 12 11 9 46 46 H 1.09004 * 113.61060 * 25.43170 * 15 13 12 47 47 H 1.08996 * 113.61439 * 254.53081 * 15 13 12 48 48 H 1.00901 * 110.99869 * 343.54986 * 18 16 15 49 49 H 1.09004 * 109.47031 * 299.99620 * 19 18 16 50 50 H 1.08995 * 109.47111 * 59.99900 * 19 18 16 51 51 H 0.96997 * 120.00713 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00755 * 180.02562 * 26 25 23 53 53 H 1.09004 * 113.61088 * 139.97449 * 31 16 15 54 54 H 1.08992 * 113.61594 * 270.79932 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5649 1.4443 0.1257 7 1 3.9994 0.9053 -0.7162 8 6 3.9696 0.7602 1.4330 9 6 4.0671 2.8651 0.1263 10 8 3.2828 3.7857 0.0347 11 7 5.3881 3.1128 0.2276 12 6 5.8763 4.4941 0.2276 13 6 7.4012 4.4959 0.3534 14 1 7.7660 3.7916 1.1010 15 6 8.1308 4.3944 -0.9965 16 6 9.1337 5.4201 -0.4424 17 1 9.4470 6.1653 -1.1734 18 7 10.2638 4.8113 0.2720 19 6 11.4998 4.9112 -0.5157 20 6 12.6342 4.2771 0.2472 21 8 12.4330 3.7903 1.3398 22 7 13.8725 4.2518 -0.2841 23 6 14.9047 3.6754 0.4101 24 1 14.7255 3.2419 1.3830 25 6 16.1813 3.6488 -0.1379 26 7 17.1707 3.0967 0.5278 27 14 16.4913 4.3991 -1.8202 28 1 16.8573 5.8298 -1.6643 29 1 17.6016 3.6741 -2.4886 30 1 15.2613 4.2899 -2.6452 31 6 8.0066 5.9034 0.4856 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8934 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 0.5489 2.1252 -1.3968 38 1 1.9982 3.1544 -1.3071 39 1 2.0698 1.5875 -2.1492 40 1 3.5350 1.2992 2.2748 41 1 3.6063 -0.2675 1.4330 42 1 5.0560 0.7619 1.5228 43 1 6.0155 2.3766 0.2997 44 1 5.4420 5.0331 1.0697 45 1 5.5877 4.9815 -0.7037 46 1 7.5460 4.7661 -1.8379 47 1 8.5678 3.4136 -1.1839 48 1 10.0649 3.8518 0.5126 49 1 11.3677 4.3940 -1.4661 50 1 11.7283 5.9606 -0.7017 51 1 14.0336 4.6414 -1.1577 52 1 18.0620 3.0785 0.1454 53 1 8.3436 6.1407 1.4947 54 1 7.3889 6.6886 0.0499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316640532.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:48 Heat of formation + Delta-G solvation = -95.869227 kcal Electronic energy + Delta-G solvation = -29011.369099 eV Core-core repulsion = 24981.968301 eV Total energy + Delta-G solvation = -4029.400798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.30026 -40.60269 -39.87656 -37.68896 -36.19259 -35.79924 -34.39903 -33.71455 -32.92284 -30.17329 -29.29142 -27.83115 -26.53561 -25.58545 -25.36524 -24.73586 -23.13011 -21.55360 -21.29703 -20.65328 -20.28273 -19.84247 -18.06530 -17.66845 -17.30380 -16.95411 -16.62493 -16.43728 -16.11480 -15.94025 -15.78499 -15.23445 -15.18906 -15.03133 -14.93245 -14.57042 -14.34292 -14.15329 -13.98921 -13.92081 -13.56364 -13.32680 -13.27349 -13.22703 -12.95992 -12.77931 -12.68957 -12.64533 -12.47996 -12.40583 -12.11743 -11.98002 -11.77880 -11.67487 -11.51245 -11.46967 -11.36561 -11.27795 -11.13526 -10.47864 -10.39696 -10.24430 -10.00538 -9.26532 -8.40877 -6.01950 1.30800 1.36620 1.45298 1.67733 1.96156 2.23625 2.25251 2.71432 3.15634 3.37766 3.62261 3.64832 3.70536 3.80504 3.86562 3.93873 4.05347 4.17623 4.20221 4.34664 4.36604 4.40594 4.47497 4.51007 4.58592 4.65296 4.69030 4.72169 4.76519 4.80651 4.86613 4.88569 4.93214 4.95144 4.97561 5.12088 5.15012 5.18542 5.22672 5.26131 5.32034 5.35377 5.37164 5.49855 5.54329 5.56034 5.66732 5.93145 6.14380 6.43364 6.58565 6.60333 6.88510 7.30059 7.40312 7.96846 8.76713 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.001587 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.143831 B =17640.959730 C =18184.134533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.069 4.069 4 H 0.056 0.944 5 C -0.157 4.157 6 C -0.103 4.103 7 H 0.114 0.886 8 C -0.145 4.145 9 C 0.511 3.489 10 O -0.577 6.577 11 N -0.720 5.720 12 C 0.136 3.864 13 C -0.113 4.113 14 H 0.091 0.909 15 C -0.152 4.152 16 C 0.062 3.938 17 H 0.098 0.902 18 N -0.668 5.668 19 C 0.063 3.937 20 C 0.448 3.552 21 O -0.615 6.615 22 N -0.590 5.590 23 C -0.330 4.330 24 H 0.055 0.945 25 C -0.014 4.014 26 N -0.934 5.934 27 Si 0.965 3.035 28 H -0.258 1.258 29 H -0.276 1.276 30 H -0.230 1.230 31 C -0.120 4.120 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.411 0.589 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.067 0.933 48 H 0.346 0.654 49 H 0.078 0.922 50 H 0.114 0.886 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.063 0.937 54 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.476 -1.668 -9.265 31.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.088 4.088 4 H 0.075 0.925 5 C -0.214 4.214 6 C -0.124 4.124 7 H 0.131 0.869 8 C -0.203 4.203 9 C 0.299 3.701 10 O -0.457 6.457 11 N -0.372 5.372 12 C 0.013 3.987 13 C -0.132 4.132 14 H 0.110 0.890 15 C -0.191 4.191 16 C -0.048 4.048 17 H 0.116 0.884 18 N -0.299 5.299 19 C -0.069 4.069 20 C 0.236 3.764 21 O -0.500 6.500 22 N -0.232 5.232 23 C -0.459 4.459 24 H 0.073 0.927 25 C -0.213 4.213 26 N -0.575 5.575 27 Si 0.785 3.215 28 H -0.183 1.183 29 H -0.201 1.201 30 H -0.153 1.153 31 C -0.159 4.159 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.248 0.752 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.086 0.914 48 H 0.165 0.835 49 H 0.096 0.904 50 H 0.132 0.868 51 H 0.226 0.774 52 H 0.088 0.912 53 H 0.082 0.918 54 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -30.791 -0.825 -8.198 31.874 hybrid contribution 0.965 -0.661 -0.894 1.472 sum -29.826 -1.486 -9.092 31.217 Atomic orbital electron populations 1.21818 0.95794 1.01908 1.01669 1.21652 0.96099 0.94915 1.02914 1.20913 0.92554 0.96848 0.98451 0.92538 1.22043 1.01288 1.01378 0.96669 1.21415 0.97428 0.91655 1.01921 0.86855 1.21866 1.02219 1.01638 0.94543 1.21180 0.82042 0.92227 0.74686 1.90628 1.56085 1.48026 1.50961 1.46053 1.07473 1.09459 1.74183 1.21283 0.93174 0.82875 1.01394 1.22685 0.92504 0.99332 0.98661 0.89029 1.23699 0.98453 0.99855 0.97075 1.22663 0.89192 0.97544 0.95401 0.88373 1.59914 1.01403 1.24880 1.43735 1.21668 0.88119 1.02439 0.94650 1.21029 0.84409 0.83495 0.87512 1.90544 1.84113 1.51443 1.23894 1.42031 1.07773 1.54153 1.19261 1.19014 0.88276 1.35895 1.02763 0.92712 1.26113 0.94079 0.97345 1.03752 1.69802 1.01820 1.45014 1.40858 0.85362 0.80018 0.79046 0.77069 1.18260 1.20079 1.15305 1.23044 0.96134 0.95971 1.00708 0.91960 0.93263 0.92778 0.91181 0.90668 0.92579 0.92558 0.92713 0.93150 0.89446 0.91189 0.75241 0.92703 0.91692 0.88232 0.91442 0.83461 0.90405 0.86838 0.77440 0.91154 0.91811 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.12 -1.16 5.19 30.59 0.16 -1.00 16 3 C -0.07 -0.96 1.61 -10.80 -0.02 -0.98 16 4 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 5 C -0.16 -2.53 8.63 71.98 0.62 -1.90 16 6 C -0.10 -1.27 2.32 -11.54 -0.03 -1.30 16 7 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 8 C -0.15 -1.39 8.74 71.98 0.63 -0.76 16 9 C 0.51 9.34 6.86 87.66 0.60 9.94 16 10 O -0.58 -15.09 13.66 -3.06 -0.04 -15.13 16 11 N -0.72 -10.63 5.45 -463.04 -2.52 -13.15 16 12 C 0.14 2.20 5.51 86.38 0.48 2.68 16 13 C -0.11 -1.74 3.52 -10.26 -0.04 -1.77 16 14 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 15 C -0.15 -2.19 7.16 31.12 0.22 -1.97 16 16 C 0.06 1.15 4.28 45.44 0.19 1.34 16 17 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 18 N -0.67 -18.08 6.19 -492.84 -3.05 -21.13 16 19 C 0.06 1.82 6.01 85.56 0.51 2.33 16 20 C 0.45 19.66 7.82 87.66 0.69 20.35 16 21 O -0.62 -33.53 15.78 -3.07 -0.05 -33.58 16 22 N -0.59 -27.27 5.09 -306.99 -1.56 -28.84 16 23 C -0.33 -19.17 10.16 84.04 0.85 -18.31 16 24 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 25 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 26 N -0.93 -55.92 13.96 21.66 0.30 -55.62 16 27 Si 0.97 38.09 27.74 68.60 1.90 39.99 16 28 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 29 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 30 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 31 C -0.12 -2.04 7.44 31.12 0.23 -1.81 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.57 6.56 -2.39 -0.02 0.56 16 35 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.07 0.61 6.17 -2.39 -0.01 0.59 16 37 H 0.06 0.84 6.56 -2.39 -0.02 0.82 16 38 H 0.06 1.23 5.51 -2.38 -0.01 1.21 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.59 6.32 -2.38 -0.02 0.57 16 42 H 0.07 0.56 7.57 -2.38 -0.02 0.54 16 43 H 0.41 4.33 7.89 -92.71 -0.73 3.60 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.10 7.85 -2.38 -0.02 1.08 16 46 H 0.10 1.21 7.90 -2.39 -0.02 1.19 16 47 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 48 H 0.35 9.98 7.81 -89.69 -0.70 9.27 16 49 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.11 2.76 8.13 -2.39 -0.02 2.74 16 51 H 0.39 14.77 5.76 -92.71 -0.53 14.24 16 52 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 53 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 54 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -78.77 422.23 0.13 -78.64 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -1.12 Total: 43.17 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 6.27 Total: 5.65 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -6.83 Total: -118.73 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.09 Total: -48.71 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -78.77 0.13 -78.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316640532.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.232 kcal (2) G-P(sol) polarization free energy of solvation -78.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds