Wall clock time and date at job start Sat Apr 11 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47003 * 2 1 4 4 H 1.09009 * 109.46705 * 304.99895 * 3 2 1 5 5 C 1.52996 * 109.47077 * 185.00371 * 3 2 1 6 6 N 1.46502 * 109.47304 * 184.99828 * 5 3 2 7 7 C 1.34772 * 120.00143 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00134 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99718 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.46629 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.47096 * 304.99475 * 10 9 7 12 12 C 1.53000 * 109.46731 * 185.00029 * 10 9 7 13 13 N 1.46499 * 109.47082 * 65.00344 * 10 9 7 14 14 C 1.34775 * 119.99299 * 204.99829 * 13 10 9 15 15 O 1.21276 * 120.00699 * 359.97438 * 14 13 10 16 16 C 1.50709 * 119.99599 * 179.97438 * 14 13 10 17 17 C 1.55238 * 110.58096 * 294.87565 * 16 14 13 18 18 C 1.54894 * 102.58338 * 203.33573 * 17 16 14 19 19 C 1.54266 * 104.31305 * 37.93170 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 21 21 N 1.46496 * 109.47129 * 64.99711 * 3 2 1 22 22 C 1.36937 * 120.00205 * 275.00025 * 21 3 2 23 23 H 1.07995 * 119.99701 * 0.02562 * 22 21 3 24 24 C 1.38807 * 120.00064 * 180.02562 * 22 21 3 25 25 N 1.31626 * 120.00208 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00428 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47224 * 89.99348 * 26 24 22 28 28 H 1.48499 * 109.47484 * 209.99846 * 26 24 22 29 29 H 1.48506 * 109.46818 * 329.99901 * 26 24 22 30 30 H 1.09002 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47364 * 300.00126 * 1 2 3 32 32 H 1.08994 * 109.47350 * 60.00517 * 1 2 3 33 33 H 1.08990 * 109.47373 * 239.99727 * 2 1 3 34 34 H 1.09004 * 109.47204 * 119.99484 * 2 1 3 35 35 H 1.08993 * 109.47439 * 64.99393 * 5 3 2 36 36 H 1.09009 * 109.46980 * 304.99493 * 5 3 2 37 37 H 0.97006 * 119.99738 * 359.97438 * 6 5 3 38 38 H 1.08998 * 109.47056 * 60.00182 * 9 7 6 39 39 H 1.08996 * 109.47171 * 299.99620 * 9 7 6 40 40 H 1.09000 * 109.47261 * 59.99995 * 12 10 9 41 41 H 1.08993 * 109.47204 * 180.02562 * 12 10 9 42 42 H 1.09006 * 109.47290 * 299.99962 * 12 10 9 43 43 H 0.96998 * 120.00025 * 24.99446 * 13 10 9 44 44 H 1.09006 * 110.43428 * 57.45967 * 16 14 13 45 45 H 1.08996 * 110.89448 * 85.05138 * 17 16 14 46 46 H 1.08993 * 110.76342 * 321.56803 * 17 16 14 47 47 H 1.09002 * 110.48891 * 279.18596 * 18 17 16 48 48 H 1.08998 * 110.48494 * 156.67683 * 18 17 16 49 49 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 50 50 H 1.08996 * 110.03108 * 216.98559 * 19 18 17 51 51 H 1.08999 * 110.04012 * 119.28327 * 20 19 18 52 52 H 1.09006 * 110.02998 * 240.67078 * 20 19 18 53 53 H 0.97007 * 119.99922 * 95.00652 * 21 3 2 54 54 H 0.97000 * 120.00092 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8169 -0.0061 7 6 5.3856 3.0630 -0.0860 8 8 6.1635 2.1483 -0.2566 9 6 5.8980 4.4750 0.0366 10 6 7.4230 4.4766 -0.0879 11 1 7.8483 3.7945 0.6482 12 6 7.9534 5.8901 0.1604 13 7 7.8036 4.0417 -1.4341 14 6 9.0130 3.4858 -1.6458 15 8 9.7863 3.3460 -0.7221 16 6 9.4043 3.0379 -3.0305 17 6 8.4984 1.8689 -3.5023 18 6 9.3754 1.1731 -4.5728 19 6 10.8068 1.2516 -4.0029 20 6 10.8251 2.4371 -3.0222 21 7 1.6523 2.0975 1.2517 22 6 0.4155 2.6735 1.3687 23 1 -0.2743 2.6445 0.5383 24 6 0.0485 3.2946 2.5546 25 7 0.8890 3.3294 3.5669 26 14 -1.6390 4.0797 2.7145 27 1 -2.6048 3.0766 3.2305 28 1 -1.5647 5.2255 3.6563 29 1 -2.0890 4.5611 1.3837 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8498 1.0377 -1.0960 36 1 3.9954 0.8312 0.6659 37 1 3.4409 3.5485 0.1307 38 1 5.6126 4.8822 1.0065 39 1 5.4679 5.0877 -0.7556 40 1 7.6702 6.2137 1.1620 41 1 9.0397 5.8915 0.0714 42 1 7.5280 6.5724 -0.5757 43 1 7.1852 4.1539 -2.1729 44 1 9.3466 3.8714 -3.7306 45 1 7.5760 2.2458 -3.9442 46 1 8.2836 1.1894 -2.6777 47 1 9.3130 1.7054 -5.5220 48 1 9.0713 0.1340 -4.6986 49 1 11.0504 0.3283 -3.4771 50 1 11.5207 1.4214 -4.8087 51 1 11.0776 2.0894 -2.0205 52 1 11.5486 3.1830 -3.3517 53 1 2.2719 2.1233 1.9978 54 1 0.6324 3.7631 4.3957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318605097.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:08 Heat of formation + Delta-G solvation = -118.405885 kcal Electronic energy + Delta-G solvation = -30449.258092 eV Core-core repulsion = 26418.880031 eV Total energy + Delta-G solvation = -4030.378061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33444 -40.49597 -38.45429 -38.04233 -36.61456 -35.14567 -34.12111 -32.81974 -31.50052 -30.25616 -29.70098 -29.48876 -28.35745 -25.55437 -24.26567 -23.57830 -22.02535 -21.60436 -21.34412 -21.04978 -20.52060 -19.22864 -18.44050 -17.90466 -17.42407 -16.91857 -16.81165 -16.58137 -16.10156 -15.83353 -15.69889 -15.36752 -15.14717 -14.77762 -14.60053 -14.39480 -14.28660 -14.24157 -13.90700 -13.80075 -13.37476 -13.03726 -12.98135 -12.87751 -12.80549 -12.77592 -12.69537 -12.34208 -12.17562 -12.08236 -12.07147 -11.97689 -11.95653 -11.86899 -11.69077 -11.60586 -11.32859 -11.29915 -10.94122 -10.74462 -10.69367 -10.02399 -9.90807 -8.95958 -7.86143 -5.13079 1.50842 1.52972 1.59401 1.72067 1.76203 2.29914 2.35109 2.61190 3.47718 3.54863 3.63262 3.71146 3.80843 3.87404 3.93813 3.99696 4.21808 4.26389 4.39742 4.43454 4.47365 4.49568 4.53785 4.57102 4.60013 4.61764 4.63174 4.71979 4.76465 4.79520 4.84592 4.89171 4.96096 5.07099 5.09274 5.11494 5.14843 5.22059 5.22347 5.27253 5.29724 5.37680 5.48033 5.51656 5.61399 5.61778 5.64520 5.72347 6.34057 6.62154 6.71046 7.36184 7.36758 7.42039 8.14034 8.38695 9.36709 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.002420 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.813516 B =11569.611131 C =12967.471992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.062 0.938 5 C 0.125 3.875 6 N -0.712 5.712 7 C 0.503 3.497 8 O -0.579 6.579 9 C -0.142 4.142 10 C 0.159 3.841 11 H 0.052 0.948 12 C -0.153 4.153 13 N -0.702 5.702 14 C 0.518 3.482 15 O -0.592 6.592 16 C -0.108 4.108 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.114 4.114 21 N -0.727 5.727 22 C -0.213 4.213 23 H 0.081 0.919 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 0.958 3.042 27 H -0.297 1.297 28 H -0.303 1.303 29 H -0.267 1.267 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.411 0.589 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.409 0.591 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.049 0.951 52 H 0.076 0.924 53 H 0.372 0.628 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.595 2.568 -19.038 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.080 0.920 5 C 0.000 4.000 6 N -0.363 5.363 7 C 0.291 3.709 8 O -0.459 6.459 9 C -0.182 4.182 10 C 0.054 3.946 11 H 0.070 0.930 12 C -0.212 4.212 13 N -0.352 5.352 14 C 0.306 3.694 15 O -0.473 6.473 16 C -0.129 4.129 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.152 4.152 21 N -0.367 5.367 22 C -0.345 4.345 23 H 0.099 0.901 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.789 3.211 27 H -0.225 1.225 28 H -0.230 1.230 29 H -0.192 1.192 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.247 0.753 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.245 0.755 44 H 0.145 0.855 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.101 0.899 51 H 0.068 0.932 52 H 0.095 0.905 53 H 0.203 0.797 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.485 1.893 -18.563 23.622 hybrid contribution -1.352 0.449 1.196 1.860 sum 13.133 2.343 -17.367 21.899 Atomic orbital electron populations 1.21698 0.95922 1.00543 1.01861 1.22007 0.96683 0.97690 1.00808 1.20695 0.91016 0.92990 0.89530 0.92043 1.21462 0.94190 0.83386 1.00921 1.45999 1.07496 1.10224 1.72568 1.21117 0.81910 0.92205 0.75692 1.90705 1.56522 1.47806 1.50860 1.22049 0.95108 0.93482 1.07538 1.20561 0.92803 0.96353 0.84908 0.92979 1.22100 1.00836 0.94724 1.03502 1.45802 1.16895 1.61788 1.10764 1.21034 0.81295 0.75558 0.91546 1.90637 1.52798 1.57264 1.46570 1.22288 0.97435 1.00518 0.92706 1.22480 0.98241 0.95546 0.98373 1.22360 0.93808 1.01063 0.98347 1.22146 0.97987 0.97400 0.98513 1.22057 0.94971 0.98245 0.99946 1.42582 1.15750 1.66031 1.12366 1.19486 0.92463 1.25055 0.97461 0.90141 1.25360 1.00838 1.03645 0.96715 1.69806 1.36755 1.51100 1.04308 0.85365 0.80955 0.77376 0.77421 1.22540 1.23009 1.19211 0.93041 0.93319 0.92952 0.90780 0.94032 0.90457 0.94096 0.75254 0.86183 0.84963 0.90450 0.93647 0.89936 0.75512 0.85462 0.89419 0.93868 0.89309 0.91247 0.92685 0.89893 0.93206 0.90525 0.79660 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.18 71.98 0.66 -4.01 16 2 C -0.13 -4.16 5.61 30.60 0.17 -3.99 16 3 C 0.17 5.62 2.59 44.99 0.12 5.73 16 4 H 0.06 2.01 8.08 -2.38 -0.02 2.00 16 5 C 0.13 3.91 5.23 86.38 0.45 4.36 16 6 N -0.71 -20.72 5.39 -463.06 -2.49 -23.22 16 7 C 0.50 14.39 7.69 87.66 0.67 15.06 16 8 O -0.58 -20.82 15.35 -3.02 -0.05 -20.87 16 9 C -0.14 -2.85 5.24 29.85 0.16 -2.69 16 10 C 0.16 3.69 2.13 44.99 0.10 3.78 16 11 H 0.05 1.68 7.39 -2.39 -0.02 1.66 16 12 C -0.15 -2.81 9.48 71.98 0.68 -2.13 16 13 N -0.70 -15.10 4.21 -442.53 -1.86 -16.97 16 14 C 0.52 13.51 7.10 87.66 0.62 14.13 16 15 O -0.59 -21.04 15.09 -3.02 -0.05 -21.08 16 16 C -0.11 -1.99 3.25 -10.34 -0.03 -2.02 16 17 C -0.11 -1.90 6.34 32.01 0.20 -1.70 16 18 C -0.12 -1.61 6.82 31.67 0.22 -1.39 16 19 C -0.12 -1.87 6.80 31.32 0.21 -1.66 16 20 C -0.11 -2.22 6.18 31.32 0.19 -2.03 16 21 N -0.73 -31.61 4.51 -322.94 -1.46 -33.07 16 22 C -0.21 -10.29 7.75 84.03 0.65 -9.64 16 23 H 0.08 3.73 7.32 -2.91 -0.02 3.71 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.97 -55.58 13.06 21.65 0.28 -55.30 16 26 Si 0.96 43.31 29.55 68.60 2.03 45.33 16 27 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.95 5.99 -2.38 -0.01 1.93 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.41 11.93 8.14 -92.70 -0.75 11.18 16 38 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.41 6.43 8.60 -92.71 -0.80 5.63 16 44 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 1.06 8.06 -2.39 -0.02 1.04 16 47 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.05 1.32 6.85 -2.39 -0.02 1.30 16 52 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 53 H 0.37 18.26 7.80 -92.70 -0.72 17.53 16 54 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -70.22 428.49 0.57 -69.66 By element: Atomic # 1 Polarization: 48.49 SS G_CDS: -1.38 Total: 47.11 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.54 Total: 8.40 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -5.53 Total: -128.55 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.09 Total: -41.95 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.22 0.57 -69.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318605097.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.749 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds