Wall clock time and date at job start Sat Apr 11 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47357 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46841 * 54.99831 * 10 9 7 12 12 C 1.53001 * 109.47349 * 174.99578 * 10 9 7 13 13 N 1.46496 * 109.47102 * 295.00109 * 10 9 7 14 14 C 1.34781 * 120.00229 * 154.99725 * 13 10 9 15 15 O 1.21278 * 119.99463 * 0.02562 * 14 13 10 16 16 C 1.50698 * 119.99825 * 179.97438 * 14 13 10 17 17 C 1.54262 * 110.03495 * 297.90670 * 16 14 13 18 18 C 1.54960 * 104.15901 * 217.13942 * 17 16 14 19 19 C 1.54889 * 102.78160 * 37.89142 * 18 17 16 20 20 C 1.53879 * 110.02910 * 180.68879 * 16 14 13 21 21 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 22 22 C 1.36941 * 119.99583 * 85.00384 * 21 3 2 23 23 H 1.07999 * 120.00378 * 359.97438 * 22 21 3 24 24 C 1.38814 * 119.99657 * 179.97438 * 22 21 3 25 25 N 1.31616 * 120.00233 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99719 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47362 * 60.00007 * 26 24 22 28 28 H 1.48501 * 109.46916 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.46979 * 299.99800 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 36 36 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 37 37 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 38 38 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 39 39 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 40 40 H 1.09004 * 109.46477 * 60.00275 * 12 10 9 41 41 H 1.08998 * 109.46838 * 179.97438 * 12 10 9 42 42 H 1.08996 * 109.47151 * 300.00558 * 12 10 9 43 43 H 0.97004 * 119.99782 * 335.00247 * 13 10 9 44 44 H 1.09001 * 110.01821 * 59.30361 * 16 14 13 45 45 H 1.08998 * 110.48291 * 335.78730 * 17 16 14 46 46 H 1.09003 * 110.48247 * 98.42724 * 17 16 14 47 47 H 1.09002 * 110.71960 * 279.57225 * 18 17 16 48 48 H 1.08999 * 110.92170 * 156.29619 * 18 17 16 49 49 H 1.09005 * 110.48660 * 203.40886 * 19 18 17 50 50 H 1.08993 * 110.60069 * 80.81030 * 19 18 17 51 51 H 1.09001 * 110.03484 * 238.56884 * 20 16 14 52 52 H 1.09003 * 110.03209 * 0.02562 * 20 16 14 53 53 H 0.96999 * 120.00274 * 264.99733 * 21 3 2 54 54 H 0.97001 * 119.99757 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4229 4.4768 0.0897 11 1 7.8489 3.7943 -0.6458 12 6 7.9535 5.8903 -0.1588 13 7 7.8025 4.0425 1.4363 14 6 9.0118 3.4867 1.6493 15 8 9.7858 3.3466 0.7262 16 6 9.4024 3.0404 3.0347 17 6 9.4295 4.2500 3.9916 18 6 10.6324 3.9668 4.9266 19 6 11.6713 3.3357 3.9667 20 6 10.8270 2.4589 3.0190 21 7 1.6525 2.0974 -1.2519 22 6 0.4156 2.6734 -1.3689 23 1 -0.2743 2.6446 -0.5385 24 6 0.0486 3.2944 -2.5549 25 7 0.8896 3.3300 -3.5668 26 14 -1.6383 4.0807 -2.7143 27 1 -1.7865 5.1463 -1.6907 28 1 -1.7831 4.6715 -4.0691 29 1 -2.6867 3.0490 -2.5102 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8499 1.0378 1.0961 36 1 3.9954 0.8311 -0.6659 37 1 3.4409 3.5484 -0.1309 38 1 5.6133 4.8818 -1.0062 39 1 5.4672 5.0880 0.7556 40 1 7.5274 6.5727 0.5767 41 1 9.0397 5.8916 -0.0689 42 1 7.6710 6.2134 -1.1607 43 1 7.1835 4.1548 2.1746 44 1 8.6978 2.2924 3.3983 45 1 9.5885 5.1734 3.4347 46 1 8.5040 4.3037 4.5649 47 1 10.3538 3.2632 5.7110 48 1 11.0165 4.8914 5.3576 49 1 12.3812 2.7228 4.5223 50 1 12.1945 4.1097 3.4053 51 1 10.8139 1.4290 3.3758 52 1 11.2359 2.4999 2.0094 53 1 2.2720 2.1231 -1.9978 54 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318605102.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:14 Heat of formation + Delta-G solvation = -117.808416 kcal Electronic energy + Delta-G solvation = -30251.223750 eV Core-core repulsion = 26220.871597 eV Total energy + Delta-G solvation = -4030.352153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37891 -40.53675 -38.45146 -38.00706 -36.62163 -35.15633 -34.12455 -32.83799 -31.50159 -30.26017 -29.68543 -29.47408 -28.36232 -25.55105 -24.24501 -23.53653 -22.03915 -21.61673 -21.48010 -21.04772 -20.44706 -19.22581 -18.46594 -17.90279 -17.45798 -16.92776 -16.81338 -16.53402 -16.09117 -15.75628 -15.69867 -15.50425 -15.26245 -14.77723 -14.57717 -14.42515 -14.28287 -14.14771 -13.88688 -13.79233 -13.48010 -13.03548 -12.96701 -12.85086 -12.73645 -12.70212 -12.64440 -12.36314 -12.22397 -12.12907 -12.00869 -11.97832 -11.93457 -11.86723 -11.63520 -11.61424 -11.41831 -11.32691 -10.93565 -10.75597 -10.68355 -10.03442 -9.92283 -8.95887 -7.85781 -5.12805 1.51981 1.53466 1.58577 1.71771 1.75395 2.28886 2.34071 2.61433 3.47737 3.54136 3.67398 3.68898 3.81845 3.85541 3.93178 3.99237 4.21311 4.26706 4.39480 4.43949 4.48083 4.49443 4.54521 4.56627 4.58873 4.62762 4.69808 4.71340 4.75896 4.82011 4.84404 4.88836 4.99251 5.06332 5.09834 5.11192 5.14474 5.21720 5.24321 5.25189 5.28964 5.38736 5.47013 5.51190 5.60982 5.61940 5.63990 5.72214 6.34105 6.61343 6.69843 7.34856 7.35798 7.42186 8.14133 8.38954 9.36759 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.002204 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.629989 B =12701.673375 C =13595.074505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.062 0.938 5 C 0.125 3.875 6 N -0.711 5.711 7 C 0.504 3.496 8 O -0.582 6.582 9 C -0.142 4.142 10 C 0.159 3.841 11 H 0.052 0.948 12 C -0.153 4.153 13 N -0.702 5.702 14 C 0.518 3.482 15 O -0.590 6.590 16 C -0.112 4.112 17 C -0.108 4.108 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.124 4.124 21 N -0.727 5.727 22 C -0.215 4.215 23 H 0.080 0.920 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 0.959 3.041 27 H -0.276 1.276 28 H -0.306 1.306 29 H -0.285 1.285 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.411 0.589 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.409 0.591 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.072 0.928 52 H 0.057 0.943 53 H 0.372 0.628 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.246 4.350 19.030 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.057 3.943 4 H 0.080 0.920 5 C 0.000 4.000 6 N -0.362 5.362 7 C 0.291 3.709 8 O -0.462 6.462 9 C -0.181 4.181 10 C 0.054 3.946 11 H 0.071 0.929 12 C -0.211 4.211 13 N -0.353 5.353 14 C 0.306 3.694 15 O -0.471 6.471 16 C -0.133 4.133 17 C -0.146 4.146 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.162 4.162 21 N -0.367 5.367 22 C -0.347 4.347 23 H 0.098 0.902 24 C -0.266 4.266 25 N -0.619 5.619 26 Si 0.790 3.210 27 H -0.202 1.202 28 H -0.233 1.233 29 H -0.212 1.212 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.248 0.752 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.245 0.755 44 H 0.123 0.877 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.075 0.925 51 H 0.091 0.909 52 H 0.076 0.924 53 H 0.203 0.797 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.123 3.670 18.539 24.205 hybrid contribution -1.376 0.337 -1.144 1.821 sum 13.748 4.008 17.395 22.531 Atomic orbital electron populations 1.21697 0.95922 1.00533 1.01859 1.22008 0.96676 0.97687 1.00819 1.20698 0.90984 0.93015 0.89562 0.92028 1.21473 0.94234 0.83379 1.00940 1.46002 1.07494 1.10258 1.72491 1.21138 0.81905 0.92223 0.75627 1.90702 1.56593 1.47900 1.51014 1.22048 0.95107 0.93392 1.07598 1.20569 0.92808 0.96386 0.84868 0.92937 1.22097 1.00795 0.94720 1.03517 1.45791 1.16817 1.61905 1.10741 1.21037 0.81224 0.75676 0.91503 1.90622 1.52583 1.57430 1.46489 1.22000 0.99484 1.00384 0.91417 1.22374 1.00689 0.95370 0.96185 1.22514 0.94364 1.01461 0.97237 1.22358 0.97930 0.98756 0.96955 1.22168 0.93366 0.99762 1.00858 1.42570 1.15761 1.66045 1.12341 1.19449 0.92503 1.25242 0.97458 0.90176 1.25371 1.00886 1.03610 0.96695 1.69798 1.36811 1.50967 1.04314 0.85429 0.81089 0.78524 0.76002 1.20239 1.23251 1.21162 0.93047 0.93319 0.92968 0.90783 0.94005 0.90470 0.94040 0.75207 0.86094 0.84922 0.89933 0.93701 0.90417 0.75525 0.87667 0.91734 0.88765 0.90076 0.90139 0.90409 0.92482 0.90926 0.92391 0.79652 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.18 71.98 0.66 -4.03 16 2 C -0.13 -4.18 5.61 30.60 0.17 -4.01 16 3 C 0.17 5.63 2.59 44.99 0.12 5.74 16 4 H 0.06 2.02 8.08 -2.39 -0.02 2.01 16 5 C 0.12 3.91 5.23 86.38 0.45 4.36 16 6 N -0.71 -20.83 5.39 -463.06 -2.49 -23.32 16 7 C 0.50 14.51 7.69 87.66 0.67 15.18 16 8 O -0.58 -21.19 15.35 -3.03 -0.05 -21.24 16 9 C -0.14 -2.85 5.24 29.85 0.16 -2.69 16 10 C 0.16 3.69 2.13 44.99 0.10 3.79 16 11 H 0.05 1.69 7.39 -2.38 -0.02 1.67 16 12 C -0.15 -2.81 9.48 71.98 0.68 -2.12 16 13 N -0.70 -15.22 4.15 -442.53 -1.84 -17.05 16 14 C 0.52 13.61 6.97 87.66 0.61 14.22 16 15 O -0.59 -21.01 14.87 -3.02 -0.04 -21.05 16 16 C -0.11 -2.10 3.29 -10.82 -0.04 -2.14 16 17 C -0.11 -1.36 6.30 31.69 0.20 -1.16 16 18 C -0.12 -1.29 6.91 31.91 0.22 -1.07 16 19 C -0.12 -1.80 6.83 31.67 0.22 -1.59 16 20 C -0.12 -2.47 6.40 31.32 0.20 -2.27 16 21 N -0.73 -31.65 4.51 -322.93 -1.46 -33.10 16 22 C -0.21 -10.40 7.75 84.03 0.65 -9.74 16 23 H 0.08 3.71 7.32 -2.91 -0.02 3.69 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 25 N -0.97 -55.49 13.06 21.65 0.28 -55.21 16 26 Si 0.96 43.27 29.55 68.60 2.03 45.30 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.31 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.96 5.99 -2.39 -0.01 1.94 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.41 11.97 8.14 -92.71 -0.75 11.22 16 38 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.41 6.52 8.59 -92.71 -0.80 5.73 16 44 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 0.90 7.85 -2.39 -0.02 0.88 16 46 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.06 1.54 6.39 -2.39 -0.02 1.53 16 53 H 0.37 18.27 7.80 -92.71 -0.72 17.54 16 54 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -70.06 427.74 0.59 -69.47 By element: Atomic # 1 Polarization: 48.50 SS G_CDS: -1.38 Total: 47.12 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.54 Total: 9.08 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -5.51 Total: -128.69 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.09 Total: -42.29 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.06 0.59 -69.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318605102.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.335 kcal (2) G-P(sol) polarization free energy of solvation -70.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds