Wall clock time and date at job start Sat Apr 11 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.53000 * 109.47187 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47778 * 54.99624 * 10 9 7 12 12 C 1.52999 * 109.47466 * 175.00167 * 10 9 7 13 13 N 1.46505 * 109.46975 * 295.00055 * 10 9 7 14 14 C 1.34770 * 120.00358 * 155.00114 * 13 10 9 15 15 O 1.21287 * 119.99793 * 359.97438 * 14 13 10 16 16 C 1.50701 * 120.00467 * 180.02562 * 14 13 10 17 17 C 1.54262 * 110.02974 * 297.90766 * 16 14 13 18 18 C 1.54971 * 104.15938 * 217.13422 * 17 16 14 19 19 C 1.54887 * 102.77579 * 37.88727 * 18 17 16 20 20 C 1.53876 * 110.03423 * 180.68796 * 16 14 13 21 21 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 3 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 3 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 3 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 31 31 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 32 32 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 34 34 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 35 35 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 36 36 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 37 37 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 38 38 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 39 39 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 40 40 H 1.09003 * 109.47127 * 59.99776 * 12 10 9 41 41 H 1.08995 * 109.47377 * 179.97438 * 12 10 9 42 42 H 1.08993 * 109.46921 * 299.99964 * 12 10 9 43 43 H 0.97001 * 119.99594 * 334.99937 * 13 10 9 44 44 H 1.08998 * 110.01572 * 59.29725 * 16 14 13 45 45 H 1.08998 * 110.49025 * 335.78084 * 17 16 14 46 46 H 1.08997 * 110.48733 * 98.42705 * 17 16 14 47 47 H 1.09005 * 110.71638 * 279.57161 * 18 17 16 48 48 H 1.09002 * 110.92204 * 156.29782 * 18 17 16 49 49 H 1.09002 * 110.48415 * 203.40682 * 19 18 17 50 50 H 1.09004 * 110.59820 * 80.82197 * 19 18 17 51 51 H 1.08998 * 110.03460 * 238.56682 * 20 16 14 52 52 H 1.08991 * 110.03172 * 0.02562 * 20 16 14 53 53 H 0.97004 * 119.99747 * 95.00774 * 21 3 2 54 54 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.4228 4.4768 -0.0903 11 1 7.7105 3.9901 -1.0222 12 6 7.9328 5.9193 -0.0897 13 7 8.0080 3.7515 1.0402 14 6 9.2249 3.1849 0.9201 15 8 9.8354 3.2750 -0.1241 16 6 9.8267 2.4384 2.0827 17 6 10.0318 3.3948 3.2756 18 6 11.3649 2.9265 3.9120 19 6 12.2219 2.5540 2.6769 20 6 11.2184 1.9036 1.7023 21 7 1.6524 2.0974 1.2518 22 6 0.4156 2.6734 1.3688 23 1 -0.2743 2.6446 0.5384 24 6 0.0486 3.2945 2.5548 25 7 0.8874 3.3249 3.5687 26 14 -1.6388 4.0796 2.7147 27 1 -1.7858 4.6654 4.0714 28 1 -1.7857 5.1494 1.6951 29 1 -2.6865 3.0484 2.5046 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9954 0.8311 0.6659 36 1 3.8498 1.0377 -1.0961 37 1 3.4410 3.5483 0.1315 38 1 5.4672 5.0884 -0.7542 39 1 5.6136 4.8809 1.0075 40 1 7.6453 6.4060 0.8423 41 1 9.0191 5.9207 -0.1798 42 1 7.4975 6.4588 -0.9307 43 1 7.5196 3.6792 1.8751 44 1 9.1762 1.6133 2.3732 45 1 10.1159 4.4247 2.9287 46 1 9.2128 3.2969 3.9882 47 1 11.2038 2.0556 4.5474 48 1 11.8313 3.7338 4.4767 49 1 13.0007 1.8431 2.9533 50 1 12.6619 3.4466 2.2321 51 1 11.2438 0.8191 1.8090 52 1 11.4588 2.1844 0.6769 53 1 2.2720 2.1231 1.9978 54 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318605103.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:17 Heat of formation + Delta-G solvation = -117.495514 kcal Electronic energy + Delta-G solvation = -30437.954274 eV Core-core repulsion = 26407.615689 eV Total energy + Delta-G solvation = -4030.338584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42741 -40.60910 -38.58458 -38.08022 -36.66403 -35.35982 -34.31791 -32.87815 -31.37179 -30.23322 -29.70067 -29.50561 -28.33904 -25.45777 -24.33975 -23.59891 -22.08640 -21.77228 -21.51859 -21.11996 -20.48381 -19.43206 -18.54333 -18.05828 -17.51239 -17.01036 -16.72089 -16.55666 -16.23434 -15.89696 -15.70716 -15.59035 -15.43929 -14.88600 -14.72554 -14.47243 -14.32142 -14.22687 -13.95303 -13.72247 -13.49521 -13.23941 -13.00679 -12.88895 -12.70250 -12.68040 -12.55713 -12.26315 -12.11069 -12.04151 -12.01039 -11.98899 -11.97179 -11.82374 -11.68032 -11.55803 -11.44408 -11.16962 -10.96644 -10.79655 -10.72237 -10.09235 -10.00598 -9.05352 -8.24508 -5.20111 1.63878 1.64989 1.69899 1.71069 1.86756 2.24502 2.25396 2.76167 3.49986 3.50537 3.62440 3.64642 3.71354 3.78191 3.82132 3.87749 4.17685 4.22970 4.27319 4.38478 4.40943 4.44501 4.46778 4.50712 4.54105 4.57484 4.65424 4.66901 4.67709 4.77602 4.78286 4.79842 4.94939 5.01106 5.02402 5.05633 5.06791 5.13268 5.20797 5.21474 5.26769 5.34810 5.41615 5.43763 5.51309 5.58131 5.63687 5.74558 6.53711 6.61012 6.61308 7.16898 7.26350 7.29053 8.07096 8.19619 9.25994 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013089 B = 0.002375 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.655482 B =11788.425281 C =12173.747235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.172 3.828 4 H 0.055 0.945 5 C 0.124 3.876 6 N -0.713 5.713 7 C 0.504 3.496 8 O -0.580 6.580 9 C -0.142 4.142 10 C 0.159 3.841 11 H 0.060 0.940 12 C -0.153 4.153 13 N -0.707 5.707 14 C 0.520 3.480 15 O -0.587 6.587 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.121 4.121 21 N -0.736 5.736 22 C -0.305 4.305 23 H 0.069 0.931 24 C -0.101 4.101 25 N -0.978 5.978 26 Si 1.116 2.884 27 H -0.301 1.301 28 H -0.278 1.278 29 H -0.286 1.286 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.084 0.916 43 H 0.406 0.594 44 H 0.100 0.900 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.072 0.928 52 H 0.061 0.939 53 H 0.359 0.641 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.542 2.454 -3.287 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.073 0.927 5 C -0.001 4.001 6 N -0.365 5.365 7 C 0.291 3.709 8 O -0.460 6.460 9 C -0.182 4.182 10 C 0.054 3.946 11 H 0.079 0.921 12 C -0.212 4.212 13 N -0.356 5.356 14 C 0.308 3.692 15 O -0.467 6.467 16 C -0.135 4.135 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.159 4.159 21 N -0.379 5.379 22 C -0.436 4.436 23 H 0.087 0.913 24 C -0.293 4.293 25 N -0.627 5.627 26 Si 0.943 3.057 27 H -0.227 1.227 28 H -0.204 1.204 29 H -0.212 1.212 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.241 0.759 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.090 0.910 52 H 0.080 0.920 53 H 0.192 0.808 54 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.301 2.704 -3.358 15.897 hybrid contribution 0.463 -0.967 -0.442 1.160 sum 15.764 1.737 -3.800 16.308 Atomic orbital electron populations 1.21683 0.95871 1.00541 1.01806 1.21997 0.96751 0.97523 1.00853 1.20604 0.90960 0.92959 0.89197 0.92672 1.21473 0.94113 0.83481 1.01011 1.46018 1.07551 1.10170 1.72728 1.21171 0.81832 0.92295 0.75566 1.90708 1.56583 1.47912 1.50772 1.22067 0.95257 0.93304 1.07583 1.20628 0.90719 0.93138 0.90148 0.92132 1.22103 1.01001 0.94104 1.03947 1.45880 1.18408 1.54891 1.16470 1.20943 0.81044 0.77861 0.89338 1.90608 1.62381 1.62104 1.31639 1.22006 0.98543 0.99097 0.93900 1.22373 0.99611 0.97872 0.94949 1.22517 0.94296 1.01841 0.96988 1.22350 0.97615 1.00475 0.95391 1.22152 0.92684 1.00446 1.00644 1.42535 1.15802 1.67233 1.12307 1.20201 0.93236 1.29880 1.00289 0.91282 1.26758 1.07939 1.02013 0.92578 1.70994 1.08685 1.49875 1.33175 0.82739 0.71776 0.75858 0.75302 1.22744 1.20406 1.21230 0.93262 0.93279 0.92890 0.90908 0.93756 0.93371 0.90967 0.75334 0.84824 0.86192 0.90582 0.93608 0.89705 0.75891 0.88161 0.91590 0.89431 0.90304 0.90075 0.90273 0.92210 0.90967 0.92005 0.80840 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 2 C -0.13 -4.23 5.61 30.59 0.17 -4.05 16 3 C 0.17 5.92 2.59 44.99 0.12 6.04 16 4 H 0.06 1.93 8.08 -2.38 -0.02 1.91 16 5 C 0.12 3.91 5.23 86.38 0.45 4.37 16 6 N -0.71 -20.87 5.39 -463.06 -2.49 -23.36 16 7 C 0.50 14.41 7.69 87.66 0.67 15.08 16 8 O -0.58 -20.96 15.35 -3.05 -0.05 -21.01 16 9 C -0.14 -2.83 5.24 29.85 0.16 -2.67 16 10 C 0.16 3.63 2.14 44.99 0.10 3.73 16 11 H 0.06 1.82 7.39 -2.39 -0.02 1.80 16 12 C -0.15 -2.74 9.48 71.98 0.68 -2.05 16 13 N -0.71 -16.66 4.15 -442.53 -1.84 -18.50 16 14 C 0.52 14.34 6.96 87.66 0.61 14.95 16 15 O -0.59 -20.77 14.87 -3.05 -0.05 -20.81 16 16 C -0.11 -2.42 3.29 -10.82 -0.04 -2.46 16 17 C -0.11 -1.73 6.30 31.70 0.20 -1.53 16 18 C -0.12 -1.59 6.91 31.91 0.22 -1.37 16 19 C -0.12 -1.94 6.83 31.67 0.22 -1.72 16 20 C -0.12 -2.57 6.40 31.32 0.20 -2.37 16 21 N -0.74 -31.65 4.50 -322.94 -1.45 -33.10 16 22 C -0.30 -14.86 7.75 84.03 0.65 -14.21 16 23 H 0.07 3.32 7.32 -2.91 -0.02 3.30 16 24 C -0.10 -5.33 5.50 84.86 0.47 -4.87 16 25 N -0.98 -56.41 13.70 21.65 0.30 -56.11 16 26 Si 1.12 48.49 29.92 68.60 2.05 50.54 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 28 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.29 -11.79 7.11 99.48 0.71 -11.09 16 30 H 0.05 2.02 5.99 -2.38 -0.01 2.00 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.41 12.00 8.14 -92.71 -0.75 11.25 16 38 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.41 8.12 8.59 -92.71 -0.80 7.32 16 44 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.07 1.10 7.85 -2.39 -0.02 1.08 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.06 1.67 6.39 -2.39 -0.02 1.65 16 53 H 0.36 16.69 6.63 -92.71 -0.61 16.08 16 54 H 0.24 13.99 6.77 -92.71 -0.63 13.36 16 Total: -1.00 -69.42 426.03 0.88 -68.54 By element: Atomic # 1 Polarization: 52.20 SS G_CDS: -1.13 Total: 51.07 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.54 Total: 2.74 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -5.49 Total: -131.07 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.09 Total: -41.82 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.05 Total: 50.54 kcal Total: -69.42 0.88 -68.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318605103.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.951 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds