Wall clock time and date at job start Sat Apr 11 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47652 * 2 1 4 4 C 1.42904 * 113.99833 * 184.99117 * 3 2 1 5 5 H 1.09001 * 109.46824 * 34.78171 * 4 3 2 6 6 C 1.52997 * 109.46856 * 274.77819 * 4 3 2 7 7 C 1.52996 * 109.47396 * 295.34685 * 6 4 3 8 8 C 1.50699 * 109.46804 * 154.77965 * 4 3 2 9 9 O 1.21284 * 119.99842 * 10.04074 * 8 4 3 10 10 N 1.34776 * 120.00035 * 190.03857 * 8 4 3 11 11 C 1.47014 * 125.64728 * 5.38880 * 10 8 4 12 12 C 1.54330 * 107.26724 * 178.84915 * 11 10 8 13 13 C 1.55162 * 103.02117 * 338.13957 * 12 11 10 14 14 H 1.09002 * 110.99946 * 277.23371 * 13 12 11 15 15 N 1.46897 * 111.00467 * 153.38271 * 13 12 11 16 16 C 1.46904 * 110.99606 * 192.10932 * 15 13 12 17 17 C 1.53234 * 109.33670 * 172.74711 * 16 15 13 18 18 N 1.47080 * 108.52717 * 53.82664 * 17 16 15 19 19 C 1.36931 * 120.88424 * 128.83591 * 18 17 16 20 20 H 1.08007 * 119.99884 * 213.96691 * 19 18 17 21 21 C 1.38813 * 119.99970 * 33.95839 * 19 18 17 22 22 N 1.31614 * 120.00100 * 6.01761 * 21 19 18 23 23 Si 1.86801 * 119.99904 * 186.01082 * 21 19 18 24 24 H 1.48506 * 109.47266 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47075 * 120.00305 * 23 21 19 26 26 H 1.48496 * 109.47271 * 240.00076 * 23 21 19 27 27 C 1.47087 * 118.23439 * 308.81836 * 18 17 16 28 28 C 1.46894 * 110.99951 * 67.80613 * 15 13 12 29 29 C 1.47424 * 125.64852 * 185.69220 * 10 8 4 30 30 H 1.09008 * 109.46848 * 60.00076 * 1 2 3 31 31 H 1.08995 * 109.47781 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46838 * 300.00854 * 1 2 3 33 33 H 1.09001 * 109.47223 * 239.99507 * 2 1 3 34 34 H 1.09008 * 109.46848 * 119.99924 * 2 1 3 35 35 H 1.09004 * 109.47032 * 55.35029 * 6 4 3 36 36 H 1.09004 * 109.46818 * 175.34593 * 6 4 3 37 37 H 1.09001 * 109.47199 * 54.90418 * 7 6 4 38 38 H 1.09002 * 109.47076 * 174.90842 * 7 6 4 39 39 H 1.08998 * 109.47313 * 294.90600 * 7 6 4 40 40 H 1.09001 * 109.88500 * 298.39677 * 11 10 8 41 41 H 1.09006 * 109.88507 * 59.55878 * 11 10 8 42 42 H 1.09004 * 110.85249 * 219.67473 * 12 11 10 43 43 H 1.08996 * 110.67336 * 96.52195 * 12 11 10 44 44 H 1.09003 * 109.48857 * 292.70167 * 16 15 13 45 45 H 1.08998 * 109.49503 * 52.78458 * 16 15 13 46 46 H 1.09004 * 109.62922 * 294.11372 * 17 16 15 47 47 H 1.09004 * 109.79217 * 173.63386 * 17 16 15 48 48 H 0.96995 * 119.99954 * 180.02562 * 22 21 19 49 49 H 1.09002 * 109.62232 * 291.46905 * 27 18 17 50 50 H 1.08994 * 109.78676 * 170.98783 * 27 18 17 51 51 H 1.08997 * 109.49546 * 307.20688 * 28 15 13 52 52 H 1.09000 * 109.49885 * 67.29587 * 28 15 13 53 53 H 1.08999 * 110.36913 * 322.93818 * 29 10 8 54 54 H 1.09004 * 110.36424 * 85.14686 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4264 1.4615 -0.1136 5 1 3.8046 0.6666 -0.7563 6 6 4.0603 1.3409 1.2737 7 6 3.6196 2.5223 2.1403 8 6 3.7763 2.8000 -0.7111 9 8 2.9195 3.6485 -0.8416 10 7 5.0413 3.0542 -1.1006 11 6 6.1475 2.0859 -1.1043 12 6 7.3920 2.8143 -1.6544 13 6 6.7809 3.9959 -2.4531 14 1 6.4798 3.6783 -3.4514 15 7 7.7179 5.1251 -2.5223 16 6 7.0486 6.3347 -3.0192 17 6 8.0049 7.5267 -2.9058 18 7 9.2608 7.1850 -3.5906 19 6 9.8022 8.0251 -4.5266 20 1 10.3335 7.6184 -5.3745 21 6 9.6679 9.3996 -4.3859 22 7 9.1255 9.8997 -3.2960 23 14 10.2573 10.5394 -5.7435 24 1 10.8243 9.7339 -6.8548 25 1 9.1137 11.3416 -6.2475 26 1 11.3018 11.4488 -5.2076 27 6 9.9202 5.9169 -3.2431 28 6 8.8885 4.7883 -3.3432 29 6 5.5463 4.3508 -1.5874 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.7400 0.4090 1.7397 36 1 5.1461 1.3451 1.1785 37 1 2.5309 2.5714 2.1612 38 1 3.9970 2.3898 3.1542 39 1 4.0170 3.4474 1.7227 40 1 6.3382 1.7370 -0.0894 41 1 5.8995 1.2420 -1.7481 42 1 7.9655 2.1604 -2.3115 43 1 8.0149 3.1814 -0.8388 44 1 6.7673 6.1921 -4.0626 45 1 6.1557 6.5269 -2.4243 46 1 8.2059 7.7362 -1.8552 47 1 7.5589 8.4036 -3.3751 48 1 9.0314 10.8600 -3.1978 49 1 10.3054 5.9717 -2.2248 50 1 10.7404 5.7258 -3.9350 51 1 9.3300 3.8591 -2.9833 52 1 8.5816 4.6673 -4.3821 53 1 4.7894 4.8498 -2.1925 54 1 5.8381 4.9833 -0.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570164893.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:37 Heat of formation + Delta-G solvation = -67.645200 kcal Electronic energy + Delta-G solvation = -31014.185268 eV Core-core repulsion = 26986.008355 eV Total energy + Delta-G solvation = -4028.176913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55142 -40.11207 -38.89041 -37.95912 -35.86995 -34.70891 -33.31099 -32.07068 -31.82724 -31.29863 -29.95156 -28.36727 -27.18560 -25.22637 -24.52236 -24.21681 -23.59995 -22.42935 -21.60903 -20.82173 -20.35670 -18.81520 -18.24853 -17.96413 -17.52563 -16.98082 -16.70844 -16.31520 -16.20460 -15.80225 -15.50004 -15.30540 -15.24532 -14.95549 -14.86589 -14.61978 -14.49141 -14.27479 -13.91805 -13.70422 -13.55001 -13.26258 -13.16388 -13.12199 -13.06047 -12.76852 -12.74508 -12.57276 -12.50574 -12.25495 -12.20901 -12.05205 -12.00567 -11.95495 -11.85846 -11.61795 -11.44149 -11.35728 -10.94848 -10.61437 -10.46706 -9.73321 -9.31914 -8.58132 -7.88107 -5.42604 1.44937 1.45772 1.49621 1.56524 1.59887 2.48520 2.77285 3.00197 3.29369 3.30834 3.62343 3.66653 3.70681 3.74896 3.92026 4.06941 4.16452 4.18245 4.26156 4.28692 4.33346 4.34575 4.39217 4.47517 4.51957 4.53912 4.58794 4.63056 4.71019 4.73004 4.81375 4.83999 4.85722 4.90641 4.98176 5.00758 5.04434 5.08504 5.12028 5.14702 5.23665 5.26937 5.29084 5.34451 5.38419 5.61512 5.69164 6.10917 6.15178 6.24827 6.41103 6.46316 7.06687 7.14581 7.82667 8.39796 9.18093 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.002144 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.132935 B =13056.642859 C =13423.540158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.082 3.918 5 H 0.115 0.885 6 C -0.135 4.135 7 C -0.150 4.150 8 C 0.526 3.474 9 O -0.579 6.579 10 N -0.614 5.614 11 C 0.095 3.905 12 C -0.112 4.112 13 C 0.072 3.928 14 H 0.052 0.948 15 N -0.525 5.525 16 C 0.050 3.950 17 C 0.190 3.810 18 N -0.615 5.615 19 C -0.264 4.264 20 H 0.066 0.934 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.144 3.856 28 C 0.058 3.942 29 C 0.118 3.882 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.016 0.984 45 H 0.070 0.930 46 H -0.001 1.001 47 H 0.051 0.949 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.062 0.938 51 H 0.106 0.894 52 H 0.022 0.978 53 H 0.050 0.950 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 -27.973 8.321 30.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.310 6.310 4 C 0.022 3.978 5 H 0.132 0.868 6 C -0.173 4.173 7 C -0.207 4.207 8 C 0.315 3.685 9 O -0.457 6.457 10 N -0.349 5.349 11 C -0.027 4.027 12 C -0.150 4.150 13 C -0.038 4.038 14 H 0.070 0.930 15 N -0.250 5.250 16 C -0.080 4.080 17 C 0.064 3.936 18 N -0.339 5.339 19 C -0.394 4.394 20 H 0.084 0.916 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.018 3.982 28 C -0.071 4.071 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.017 0.983 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.081 0.919 51 H 0.124 0.876 52 H 0.040 0.960 53 H 0.069 0.931 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.425 -27.149 8.789 30.052 hybrid contribution -0.123 1.468 -1.488 2.094 sum -9.548 -25.681 7.301 28.355 Atomic orbital electron populations 1.21777 0.93495 1.03422 1.02225 1.22837 0.96038 0.82198 1.01764 1.88039 1.19694 1.28706 1.94581 1.21992 0.83603 0.93724 0.98530 0.86791 1.22065 1.01962 1.00512 0.92752 1.21678 1.01260 0.97293 1.00477 1.20720 0.80437 0.90153 0.77181 1.90706 1.48658 1.49931 1.56446 1.48421 1.09100 1.13010 1.64393 1.22506 0.84702 0.91877 1.03569 1.22706 0.96758 0.95038 1.00510 1.22745 0.91535 0.92134 0.97355 0.93037 1.61954 1.07674 1.02803 1.52571 1.22581 0.97029 0.91849 0.96521 1.20532 0.85566 0.93594 0.93894 1.44311 1.23060 1.20571 1.45986 1.19517 1.31402 0.87561 1.00930 0.91609 1.26059 1.00576 0.98996 0.98901 1.70129 1.49037 1.11341 1.27727 0.85159 0.77332 0.78725 0.78943 1.18823 1.21885 1.21686 1.21164 0.94041 0.85404 0.97570 1.22488 0.91301 0.99077 0.94211 1.22046 0.94849 0.85933 0.97674 0.93316 0.88494 0.92622 0.91832 0.90987 0.87923 0.88215 0.93536 0.90651 0.95524 0.88208 0.88552 0.87387 0.89310 0.96538 0.91194 0.98325 0.93103 0.94086 0.96362 0.91942 0.87584 0.96006 0.93099 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.60 6.48 71.98 0.47 1.07 16 3 O -0.39 -8.52 8.99 -130.13 -1.17 -9.69 16 4 C 0.08 1.44 2.21 29.85 0.07 1.51 16 5 H 0.11 1.19 7.55 -2.39 -0.02 1.18 16 6 C -0.14 -1.69 5.75 30.59 0.18 -1.52 16 7 C -0.15 -2.81 9.43 71.98 0.68 -2.13 16 8 C 0.53 14.00 5.78 87.66 0.51 14.51 16 9 O -0.58 -22.04 16.76 15.80 0.26 -21.77 16 10 N -0.61 -13.84 3.33 -811.79 -2.70 -16.54 16 11 C 0.09 1.19 6.17 86.73 0.54 1.73 16 12 C -0.11 -1.73 5.62 31.79 0.18 -1.55 16 13 C 0.07 1.78 2.72 46.31 0.13 1.90 16 14 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 15 N -0.52 -17.07 4.53 -861.91 -3.90 -20.97 16 16 C 0.05 1.98 5.43 86.38 0.47 2.45 16 17 C 0.19 9.61 5.33 86.35 0.46 10.07 16 18 N -0.61 -31.54 3.02 -698.11 -2.11 -33.64 16 19 C -0.26 -14.69 9.60 84.03 0.81 -13.89 16 20 H 0.07 3.55 7.84 -2.91 -0.02 3.53 16 21 C -0.05 -2.83 5.14 84.86 0.44 -2.40 16 22 N -0.94 -56.68 11.06 21.65 0.24 -56.44 16 23 Si 0.97 45.48 29.56 68.60 2.03 47.50 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 27 C 0.14 5.85 6.69 86.35 0.58 6.43 16 28 C 0.06 1.83 5.52 86.39 0.48 2.31 16 29 C 0.12 3.31 5.06 86.85 0.44 3.75 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.60 7.97 -2.39 -0.02 0.58 16 34 H 0.07 0.59 7.54 -2.38 -0.02 0.57 16 35 H 0.10 0.79 7.51 -2.38 -0.02 0.77 16 36 H 0.10 0.84 5.79 -2.39 -0.01 0.83 16 37 H 0.05 1.04 7.68 -2.39 -0.02 1.02 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.03 0.64 7.29 -2.39 -0.02 0.62 16 40 H 0.10 0.78 5.99 -2.39 -0.01 0.77 16 41 H 0.10 0.73 8.11 -2.38 -0.02 0.71 16 42 H 0.11 1.15 7.97 -2.39 -0.02 1.13 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 2.66 6.60 -2.39 -0.02 2.64 16 46 H 0.00 -0.08 8.14 -2.38 -0.02 -0.09 16 47 H 0.05 2.91 6.33 -2.39 -0.02 2.89 16 48 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 51 H 0.11 2.47 7.11 -2.39 -0.02 2.45 16 52 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 53 H 0.05 1.67 7.72 -2.39 -0.02 1.65 16 54 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 Total: -1.00 -78.27 410.59 0.65 -77.63 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.85 Total: 10.85 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 7.14 Total: 23.08 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -8.47 Total: -127.59 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.91 Total: -31.46 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -78.27 0.65 -77.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570164893.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.981 kcal (2) G-P(sol) polarization free energy of solvation -78.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds