Wall clock time and date at job start Sat Apr 11 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47123 * 2 1 4 4 N 1.46504 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.46762 * 124.34766 * 90.00086 * 4 3 2 6 6 C 1.54479 * 105.46905 * 197.03724 * 5 4 3 7 7 H 1.09001 * 110.97276 * 92.74343 * 6 5 4 8 8 C 1.50699 * 110.96681 * 216.46496 * 6 5 4 9 9 O 1.21285 * 120.00444 * 359.97438 * 8 6 5 10 10 N 1.34780 * 120.00044 * 180.02562 * 8 6 5 11 11 C 1.46503 * 120.00122 * 180.02562 * 10 8 6 12 12 H 1.08998 * 109.47184 * 34.99449 * 11 10 8 13 13 C 1.52998 * 109.47080 * 154.99758 * 11 10 8 14 14 N 1.46492 * 109.47482 * 304.99536 * 13 11 10 15 15 C 1.36935 * 120.00376 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99724 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00063 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99887 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00212 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47297 * 89.99941 * 19 17 15 21 21 H 1.48503 * 109.47261 * 330.00122 * 19 17 15 22 22 H 1.48500 * 109.47454 * 210.00115 * 19 17 15 23 23 C 1.53007 * 109.46856 * 274.99794 * 11 10 8 24 24 C 1.53002 * 109.46738 * 299.99951 * 23 11 10 25 25 C 1.53002 * 109.46881 * 59.99799 * 23 11 10 26 26 C 1.52999 * 109.47053 * 179.97438 * 23 11 10 27 27 C 1.54621 * 101.76760 * 334.58150 * 6 5 4 28 28 C 1.34420 * 124.34985 * 270.02339 * 4 3 2 29 29 O 1.21282 * 124.93988 * 359.60680 * 28 4 3 30 30 H 1.09001 * 109.47042 * 59.99875 * 1 2 3 31 31 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47010 * 300.00339 * 1 2 3 33 33 H 1.08995 * 109.47114 * 240.00314 * 2 1 3 34 34 H 1.09001 * 109.47042 * 120.00125 * 2 1 3 35 35 H 1.08995 * 109.46869 * 60.00164 * 3 2 1 36 36 H 1.08995 * 109.46872 * 300.00208 * 3 2 1 37 37 H 1.08996 * 110.24656 * 78.03824 * 5 4 3 38 38 H 1.09000 * 110.24434 * 316.03373 * 5 4 3 39 39 H 0.97001 * 120.00019 * 359.97438 * 10 8 6 40 40 H 1.08999 * 109.46602 * 184.99655 * 13 11 10 41 41 H 1.08998 * 109.47239 * 65.00306 * 13 11 10 42 42 H 0.97009 * 119.99477 * 0.02562 * 14 13 11 43 43 H 0.97006 * 119.99732 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.47075 * 60.00238 * 24 23 11 45 45 H 1.08999 * 109.46504 * 179.97438 * 24 23 11 46 46 H 1.08991 * 109.47035 * 299.99939 * 24 23 11 47 47 H 1.08998 * 109.47329 * 60.00242 * 25 23 11 48 48 H 1.09003 * 109.46470 * 180.02562 * 25 23 11 49 49 H 1.08998 * 109.47560 * 299.99639 * 25 23 11 50 50 H 1.09001 * 109.47040 * 59.99738 * 26 23 11 51 51 H 1.08994 * 109.47151 * 179.97438 * 26 23 11 52 52 H 1.08994 * 109.47326 * 300.00291 * 26 23 11 53 53 H 1.09001 * 110.48940 * 143.47368 * 27 6 5 54 54 H 1.08998 * 110.48890 * 266.12284 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.3326 1.4427 -1.2127 6 6 5.7406 1.0064 -0.7504 7 1 5.8663 -0.0720 -0.8475 8 6 6.8111 1.7423 -1.5142 9 8 6.5027 2.5524 -2.3625 10 7 8.1113 1.4995 -1.2553 11 6 9.1521 2.2154 -1.9975 12 1 8.8159 3.2309 -2.2066 13 6 10.4326 2.2639 -1.1616 14 7 10.1393 2.8524 0.1475 15 6 11.1390 2.9994 1.0716 16 1 12.1439 2.6819 0.8352 17 6 10.8609 3.5565 2.3123 18 7 11.8220 3.6982 3.2004 19 14 9.1231 4.1063 2.7209 20 1 8.3792 2.9786 3.3375 21 1 8.4334 4.5328 1.4769 22 1 9.1750 5.2446 3.6732 23 6 9.4302 1.4887 -3.3150 24 6 9.9020 0.0632 -3.0214 25 6 8.1495 1.4402 -4.1507 26 6 10.5166 2.2366 -4.0904 27 6 5.7301 1.4315 0.7362 28 6 4.2640 1.4419 1.1088 29 8 3.8356 1.4481 2.2435 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 4.3703 2.4432 -1.6435 38 1 3.9374 0.7329 -1.9393 39 1 8.3580 0.8514 -0.5771 40 1 11.1782 2.8716 -1.6743 41 1 10.8176 1.2530 -1.0276 42 1 9.2368 3.1379 0.3596 43 1 11.6276 4.0872 4.0675 44 1 9.1277 -0.4693 -2.4692 45 1 10.0997 -0.4545 -3.9600 46 1 10.8143 0.0979 -2.4259 47 1 7.8134 2.4557 -4.3599 48 1 8.3476 0.9221 -5.0891 49 1 7.3752 0.9076 -3.5986 50 1 11.4290 2.2717 -3.4950 51 1 10.7151 1.7188 -5.0287 52 1 10.1801 3.2520 -4.2994 53 1 6.2729 0.7074 1.3439 54 1 6.1601 2.4264 0.8516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571633850.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:17 Heat of formation + Delta-G solvation = -93.670762 kcal Electronic energy + Delta-G solvation = -31682.754301 eV Core-core repulsion = 27653.448835 eV Total energy + Delta-G solvation = -4029.305466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.05794 -40.92295 -38.83492 -37.48192 -36.32681 -35.76145 -34.62073 -33.35262 -32.42207 -29.71987 -28.83180 -28.09741 -27.92476 -27.19902 -25.55216 -24.17476 -22.88255 -22.75037 -21.25022 -20.53457 -20.10147 -19.42231 -18.45653 -18.01046 -17.21864 -17.07379 -16.82997 -16.33266 -16.27039 -15.73948 -15.60025 -15.26672 -14.94341 -14.86231 -14.77571 -14.70816 -14.64221 -14.43620 -14.06356 -13.84544 -13.66106 -13.29382 -13.13613 -13.07157 -12.96645 -12.86583 -12.77126 -12.59068 -12.48177 -12.43066 -12.30152 -12.21652 -12.18452 -11.96960 -11.83944 -11.68114 -11.57546 -11.26428 -11.17154 -10.98190 -10.71972 -9.91849 -9.79075 -9.28621 -8.03968 -5.35767 1.33751 1.34847 1.37721 1.42269 1.57826 1.83651 2.21690 2.44200 3.13682 3.28399 3.30237 3.49029 3.71312 3.80707 3.86176 3.97667 4.01042 4.05494 4.07108 4.17443 4.31862 4.34901 4.45076 4.47334 4.49359 4.58206 4.63609 4.66829 4.72549 4.84774 4.88419 4.90269 4.91791 4.94504 5.02105 5.11259 5.13011 5.14703 5.17407 5.18356 5.29763 5.31358 5.36763 5.48000 5.53086 5.60404 5.65731 5.78011 5.96077 6.20090 6.57017 6.99313 7.07433 7.24110 7.83520 8.00797 9.17569 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004075 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.635233 B = 6868.749041 C = 9459.084621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.119 3.881 4 N -0.612 5.612 5 C 0.120 3.880 6 C -0.110 4.110 7 H 0.153 0.847 8 C 0.527 3.473 9 O -0.557 6.557 10 N -0.707 5.707 11 C 0.156 3.844 12 H 0.065 0.935 13 C 0.145 3.855 14 N -0.755 5.755 15 C -0.223 4.223 16 H 0.064 0.936 17 C -0.055 4.055 18 N -0.981 5.981 19 Si 0.938 3.062 20 H -0.272 1.272 21 H -0.263 1.263 22 H -0.303 1.303 23 C -0.069 4.069 24 C -0.139 4.139 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.150 4.150 28 C 0.513 3.487 29 O -0.577 6.577 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.411 0.589 40 H 0.040 0.960 41 H 0.050 0.950 42 H 0.363 0.637 43 H 0.256 0.744 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.042 0.958 48 H 0.059 0.941 49 H 0.051 0.949 50 H 0.056 0.944 51 H 0.072 0.928 52 H 0.048 0.952 53 H 0.123 0.877 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.339 -11.459 -17.457 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.002 4.002 4 N -0.344 5.344 5 C -0.002 4.002 6 C -0.131 4.131 7 H 0.170 0.830 8 C 0.313 3.687 9 O -0.436 6.436 10 N -0.358 5.358 11 C 0.050 3.950 12 H 0.083 0.917 13 C 0.019 3.981 14 N -0.401 5.401 15 C -0.355 4.355 16 H 0.082 0.918 17 C -0.247 4.247 18 N -0.632 5.632 19 Si 0.767 3.233 20 H -0.198 1.198 21 H -0.188 1.188 22 H -0.230 1.230 23 C -0.071 4.071 24 C -0.197 4.197 25 C -0.178 4.178 26 C -0.200 4.200 27 C -0.190 4.190 28 C 0.301 3.699 29 O -0.457 6.457 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.134 0.866 39 H 0.247 0.753 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.196 0.804 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.091 0.909 52 H 0.068 0.932 53 H 0.141 0.859 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.650 -10.885 -17.437 27.755 hybrid contribution -0.339 0.664 1.433 1.616 sum -18.989 -10.221 -16.004 26.855 Atomic orbital electron populations 1.21682 0.93757 1.02626 1.02412 1.21844 0.97272 0.95898 1.02225 1.21652 0.76635 0.98202 1.03704 1.48449 1.07088 1.71978 1.06926 1.22083 0.87394 1.04176 0.86537 1.22244 0.93896 1.03951 0.93034 0.82976 1.20243 0.83541 0.82291 0.82654 1.90710 1.82401 1.35850 1.34604 1.45959 1.05126 1.43866 1.40814 1.21143 0.86718 0.95751 0.91355 0.91662 1.21244 0.95017 0.97528 0.84333 1.42697 1.07882 1.75748 1.13761 1.19018 0.90997 1.32193 0.93249 0.91778 1.25311 1.00318 1.02324 0.96749 1.69851 1.33262 1.52572 1.07495 0.85675 0.81733 0.78071 0.77820 1.19754 1.18778 1.22984 1.20836 0.96570 0.96370 0.93274 1.21895 1.01274 0.94419 1.02076 1.21782 0.95767 1.01313 0.98906 1.21907 0.97848 0.99924 1.00361 1.22367 0.94528 1.05296 0.96845 1.21071 0.89836 0.74635 0.84345 1.90704 1.79362 1.52613 1.22986 0.91078 0.91720 0.93138 0.90222 0.93800 0.91742 0.87669 0.90028 0.86615 0.75280 0.94230 0.93190 0.80363 0.93458 0.92078 0.91502 0.92603 0.93842 0.92224 0.93003 0.92500 0.90916 0.93245 0.85895 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.13 -1.85 6.26 30.60 0.19 -1.65 16 3 C 0.12 1.95 5.93 86.38 0.51 2.46 16 4 N -0.61 -12.23 2.93 -817.99 -2.40 -14.63 16 5 C 0.12 1.91 6.71 86.83 0.58 2.49 16 6 C -0.11 -1.83 3.54 -10.49 -0.04 -1.87 16 7 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 8 C 0.53 11.76 5.42 87.66 0.47 12.23 16 9 O -0.56 -15.36 12.62 -3.04 -0.04 -15.40 16 10 N -0.71 -16.37 3.64 -442.51 -1.61 -17.98 16 11 C 0.16 4.15 1.69 44.99 0.08 4.22 16 12 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 13 C 0.14 4.80 5.10 86.38 0.44 5.24 16 14 N -0.76 -32.63 5.24 -343.48 -1.80 -34.43 16 15 C -0.22 -12.15 10.47 84.03 0.88 -11.27 16 16 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 17 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 18 N -0.98 -62.16 13.97 21.65 0.30 -61.86 16 19 Si 0.94 45.80 27.73 68.60 1.90 47.71 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 22 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 23 C -0.07 -1.44 0.62 -52.18 -0.03 -1.48 16 24 C -0.14 -2.51 7.97 71.98 0.57 -1.93 16 25 C -0.12 -2.45 7.00 71.98 0.50 -1.95 16 26 C -0.14 -2.92 8.12 71.98 0.58 -2.33 16 27 C -0.15 -3.44 6.41 30.58 0.20 -3.25 16 28 C 0.51 13.94 8.02 87.90 0.71 14.64 16 29 O -0.58 -20.88 17.59 -3.03 -0.05 -20.93 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.30 7.92 -2.39 -0.02 1.28 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.57 6.96 -2.39 -0.02 1.55 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.41 8.71 8.60 -92.71 -0.80 7.91 16 40 H 0.04 1.38 6.71 -2.39 -0.02 1.36 16 41 H 0.05 1.59 6.17 -2.39 -0.01 1.57 16 42 H 0.36 15.49 5.20 -92.70 -0.48 15.01 16 43 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 44 H 0.06 1.00 7.60 -2.39 -0.02 0.99 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 1.11 6.32 -2.39 -0.02 1.09 16 47 H 0.04 1.05 7.53 -2.39 -0.02 1.03 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.05 1.05 5.77 -2.39 -0.01 1.04 16 50 H 0.06 1.24 6.55 -2.39 -0.02 1.23 16 51 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 54 H 0.09 2.48 7.89 -2.39 -0.02 2.46 16 Total: -1.00 -75.04 416.16 2.69 -72.35 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.45 Total: 33.18 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 6.83 Total: 11.98 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -5.51 Total: -128.89 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.09 Total: -36.33 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.71 kcal Total: -75.04 2.69 -72.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571633850.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.319 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds