Wall clock time and date at job start Sat Apr 11 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46790 * 2 1 4 4 H 1.09000 * 109.47382 * 311.51881 * 3 2 1 5 5 C 1.53011 * 109.47102 * 191.52088 * 3 2 1 6 6 C 1.53002 * 109.47330 * 71.52367 * 3 2 1 7 7 H 1.08995 * 109.46945 * 307.45194 * 6 3 2 8 8 N 1.46496 * 109.47152 * 187.44395 * 6 3 2 9 9 C 1.34787 * 119.99547 * 83.91281 * 8 6 3 10 10 O 1.21582 * 120.00043 * 5.01720 * 9 8 6 11 11 N 1.34770 * 119.99737 * 185.01910 * 9 8 6 12 12 C 1.47027 * 125.65248 * 359.69332 * 11 9 8 13 13 C 1.54313 * 107.27713 * 180.96556 * 12 11 9 14 14 C 1.55150 * 102.86580 * 22.52525 * 13 12 11 15 15 C 1.47426 * 125.64739 * 179.97438 * 11 9 8 16 16 C 1.50702 * 109.46911 * 67.44433 * 6 3 2 17 17 O 1.21290 * 119.99908 * 70.23273 * 16 6 3 18 18 N 1.34771 * 120.00267 * 250.22433 * 16 6 3 19 19 C 1.46506 * 120.00015 * 4.28315 * 18 16 6 20 20 C 1.46502 * 120.00314 * 184.27926 * 18 16 6 21 21 H 1.09001 * 109.46737 * 0.02562 * 20 18 16 22 22 C 1.52994 * 109.47181 * 240.00440 * 20 18 16 23 23 C 1.50700 * 109.46896 * 120.00152 * 20 18 16 24 24 H 1.08001 * 120.00031 * 26.61336 * 23 20 18 25 25 C 1.37882 * 119.99674 * 206.60777 * 23 20 18 26 26 N 1.31514 * 120.00001 * 185.23871 * 25 23 20 27 27 Si 1.86798 * 120.00092 * 5.24658 * 25 23 20 28 28 H 1.48498 * 109.47609 * 93.62811 * 27 25 23 29 29 H 1.48503 * 109.46966 * 213.63258 * 27 25 23 30 30 H 1.48508 * 109.47218 * 333.62857 * 27 25 23 31 31 H 1.08997 * 109.47332 * 69.13689 * 1 2 3 32 32 H 1.08999 * 109.46641 * 189.13975 * 1 2 3 33 33 H 1.09006 * 109.46899 * 309.13672 * 1 2 3 34 34 H 1.09000 * 109.47543 * 240.00591 * 2 1 3 35 35 H 1.08996 * 109.47435 * 119.99628 * 2 1 3 36 36 H 1.08997 * 109.46807 * 314.04837 * 5 3 2 37 37 H 1.08999 * 109.46567 * 74.04580 * 5 3 2 38 38 H 1.08994 * 109.46963 * 194.04022 * 5 3 2 39 39 H 0.96993 * 120.00727 * 263.90868 * 8 6 3 40 40 H 1.08996 * 109.87778 * 300.51546 * 12 11 9 41 41 H 1.09007 * 109.87903 * 61.67746 * 12 11 9 42 42 H 1.09004 * 110.92564 * 264.10731 * 13 12 11 43 43 H 1.09000 * 110.58902 * 140.78975 * 13 12 11 44 44 H 1.08992 * 111.00532 * 206.22730 * 14 13 12 45 45 H 1.09004 * 111.00041 * 82.37660 * 14 13 12 46 46 H 1.09007 * 110.36820 * 274.67398 * 15 11 9 47 47 H 1.08996 * 110.36659 * 36.88811 * 15 11 9 48 48 H 1.08997 * 109.47220 * 270.29104 * 19 18 16 49 49 H 1.08999 * 109.47246 * 150.28560 * 19 18 16 50 50 H 1.08999 * 109.46658 * 30.28897 * 19 18 16 51 51 H 1.09001 * 109.47583 * 63.01858 * 22 20 18 52 52 H 1.09001 * 109.47308 * 183.01792 * 22 20 18 53 53 H 1.08997 * 109.47360 * 303.01843 * 22 20 18 54 54 H 0.96994 * 120.00031 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5188 2.0122 -0.7694 5 6 3.5426 1.4523 -0.2881 6 6 1.7789 2.0758 1.3681 7 1 0.7288 1.9506 1.6320 8 7 2.1023 3.5036 1.3151 9 6 1.1917 4.3842 0.8545 10 8 0.0716 4.0071 0.5690 11 7 1.5228 5.6826 0.7103 12 6 2.8328 6.2727 1.0222 13 6 2.7374 7.7838 0.7245 14 6 1.2124 8.0568 0.8081 15 6 0.6295 6.7476 0.2191 16 6 2.6410 1.4037 2.4055 17 8 3.8409 1.5807 2.4039 18 7 2.0788 0.6060 3.3349 19 6 0.6435 0.3171 3.2810 20 6 2.9028 0.0277 4.3993 21 1 3.9359 0.3528 4.2762 22 6 2.8357 -1.4989 4.3238 23 6 2.3882 0.4876 5.7390 24 1 1.3495 0.7603 5.8538 25 6 3.2434 0.5602 6.8181 26 7 2.7749 0.8617 8.0093 27 14 5.0676 0.2304 6.5879 28 1 5.7771 1.5138 6.3537 29 1 5.6108 -0.4201 7.8074 30 1 5.2653 -0.6648 5.4196 31 1 -0.3634 0.3660 -0.9602 32 1 -0.3632 -1.0146 0.1632 33 1 -0.3633 0.6487 0.7972 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 4.0340 0.6926 0.3197 37 1 3.7115 1.2386 -1.3435 38 1 3.9526 2.4327 -0.0459 39 1 2.9716 3.8154 1.6114 40 1 3.0695 6.1144 2.0743 41 1 3.6015 5.8211 0.3951 42 1 3.1153 8.0087 -0.2729 43 1 3.2740 8.3579 1.4798 44 1 0.9354 8.9166 0.1983 45 1 0.8964 8.1950 1.8421 46 1 0.6437 6.7823 -0.8703 47 1 -0.3865 6.5869 0.5796 48 1 0.0999 1.0684 3.8537 49 1 0.4553 -0.6694 3.7047 50 1 0.3077 0.3373 2.2442 51 1 3.2574 -1.8348 3.3765 52 1 3.4052 -1.9289 5.1478 53 1 1.7966 -1.8208 4.3934 54 1 3.3766 0.9131 8.7684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646655041.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:25 Heat of formation + Delta-G solvation = -84.189053 kcal Electronic energy + Delta-G solvation = -32473.773769 eV Core-core repulsion = 28444.879461 eV Total energy + Delta-G solvation = -4028.894308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01627 -40.82885 -38.67174 -37.64885 -37.08922 -34.99649 -34.70969 -32.60465 -32.23682 -31.02403 -29.93044 -28.12859 -27.73214 -27.21377 -24.80182 -24.32584 -23.24532 -22.07445 -21.66669 -20.72715 -19.92185 -19.41176 -18.94548 -17.98222 -17.80426 -17.34556 -17.06355 -16.66469 -16.12908 -15.70210 -15.47734 -15.22083 -14.90168 -14.71923 -14.58045 -14.54127 -14.47967 -14.16769 -14.13488 -13.96331 -13.69080 -13.51113 -13.31613 -13.20431 -13.12394 -13.06046 -12.64973 -12.59972 -12.32772 -12.31284 -12.22373 -12.14943 -12.01444 -11.80319 -11.75584 -11.62422 -11.59537 -11.38271 -11.29458 -10.78644 -10.66087 -10.24500 -9.58417 -9.41104 -8.36814 -6.41256 1.18801 1.28347 1.33432 1.42933 1.79189 2.01276 2.20920 2.27806 2.91099 3.01780 3.42905 3.66046 3.69794 3.76247 3.86720 3.94105 4.05608 4.24066 4.27851 4.29224 4.42591 4.45568 4.47153 4.56517 4.60955 4.61805 4.71929 4.73672 4.77108 4.80379 4.84758 4.88505 4.91327 4.93682 4.97974 5.07076 5.10075 5.10580 5.15475 5.22722 5.26500 5.29351 5.33985 5.36275 5.38254 5.51377 5.52420 5.73432 5.92315 6.14030 6.61523 6.65445 6.80829 7.14781 7.28530 7.40689 8.78988 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.004044 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.728300 B = 6922.989243 C = 8329.464452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.087 4.087 4 H 0.083 0.917 5 C -0.134 4.134 6 C 0.153 3.847 7 H 0.102 0.898 8 N -0.724 5.724 9 C 0.720 3.280 10 O -0.621 6.621 11 N -0.638 5.638 12 C 0.087 3.913 13 C -0.119 4.119 14 C -0.125 4.125 15 C 0.117 3.883 16 C 0.506 3.494 17 O -0.573 6.573 18 N -0.586 5.586 19 C 0.067 3.933 20 C 0.228 3.772 21 H 0.045 0.955 22 C -0.143 4.143 23 C -0.524 4.524 24 H 0.045 0.955 25 C 0.027 3.973 26 N -0.936 5.936 27 Si 0.927 3.073 28 H -0.282 1.282 29 H -0.277 1.277 30 H -0.243 1.243 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.403 0.597 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.049 0.951 52 H 0.050 0.950 53 H 0.063 0.937 54 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 8.758 -20.136 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.107 4.107 4 H 0.101 0.899 5 C -0.192 4.192 6 C 0.044 3.956 7 H 0.119 0.881 8 N -0.380 5.380 9 C 0.422 3.578 10 O -0.502 6.502 11 N -0.376 5.376 12 C -0.036 4.036 13 C -0.157 4.157 14 C -0.163 4.163 15 C -0.006 4.006 16 C 0.293 3.707 17 O -0.453 6.453 18 N -0.316 5.316 19 C -0.075 4.075 20 C 0.125 3.875 21 H 0.063 0.937 22 C -0.201 4.201 23 C -0.562 4.562 24 H 0.063 0.937 25 C -0.172 4.172 26 N -0.576 5.576 27 Si 0.751 3.249 28 H -0.208 1.208 29 H -0.202 1.202 30 H -0.166 1.166 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.239 0.761 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.103 0.897 50 H 0.115 0.885 51 H 0.068 0.932 52 H 0.069 0.931 53 H 0.082 0.918 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.541 8.491 -20.122 21.894 hybrid contribution 1.043 0.063 1.102 1.519 sum -0.498 8.553 -19.019 20.860 Atomic orbital electron populations 1.21933 0.94686 1.02462 1.02132 1.21651 0.96915 0.94445 1.02949 1.21458 0.97855 0.97292 0.94069 0.89870 1.21753 0.94189 1.01865 1.01362 1.20913 0.99573 0.80006 0.95070 0.88067 1.44814 1.18215 1.05640 1.69334 1.15471 0.83601 0.80339 0.78362 1.90867 1.21241 1.78505 1.59625 1.47691 1.15698 1.05434 1.68812 1.22271 0.84421 0.96313 1.00585 1.22613 0.96798 0.92021 1.04248 1.22809 0.95117 0.96225 1.02165 1.22294 0.93618 0.85520 0.99121 1.20755 0.88398 0.79457 0.82052 1.90608 1.16208 1.63888 1.74640 1.48097 1.10024 1.47150 1.26338 1.22136 0.79921 1.02276 1.03167 1.19129 0.91935 0.91710 0.84707 0.93731 1.22147 1.01987 0.95938 1.00075 1.21343 0.96880 1.44802 0.93207 0.93654 1.25633 1.02670 0.94229 0.94646 1.70011 1.37093 1.50029 1.00436 0.86055 0.80858 0.79248 0.78721 1.20798 1.20210 1.16593 0.91830 0.90865 0.93215 0.89470 0.92781 0.93602 0.91122 0.93308 0.76079 0.92350 0.90819 0.88724 0.88481 0.86981 0.91076 0.90611 0.92022 0.94179 0.89737 0.88483 0.93249 0.93059 0.91780 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.97 71.98 0.65 -2.65 16 2 C -0.12 -2.86 4.88 30.59 0.15 -2.71 16 3 C -0.09 -2.35 2.27 -10.79 -0.02 -2.37 16 4 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 5 C -0.13 -3.63 7.92 71.99 0.57 -3.06 16 6 C 0.15 4.99 1.71 44.25 0.08 5.07 16 7 H 0.10 3.43 4.06 -2.39 -0.01 3.42 16 8 N -0.72 -22.89 4.41 -461.41 -2.03 -24.92 16 9 C 0.72 22.89 8.43 179.05 1.51 24.40 16 10 O -0.62 -23.25 16.25 -3.97 -0.06 -23.31 16 11 N -0.64 -15.62 3.33 -829.71 -2.76 -18.38 16 12 C 0.09 1.59 6.16 86.72 0.53 2.12 16 13 C -0.12 -1.33 6.95 31.78 0.22 -1.11 16 14 C -0.13 -1.51 7.08 31.99 0.23 -1.28 16 15 C 0.12 2.22 6.91 86.86 0.60 2.82 16 16 C 0.51 19.82 5.26 87.66 0.46 20.28 16 17 O -0.57 -25.17 13.72 -3.06 -0.04 -25.22 16 18 N -0.59 -23.92 2.66 -826.79 -2.20 -26.13 16 19 C 0.07 2.30 8.64 127.77 1.10 3.40 16 20 C 0.23 10.69 2.16 44.24 0.10 10.79 16 21 H 0.04 2.28 4.39 -2.39 -0.01 2.27 16 22 C -0.14 -5.73 8.88 71.98 0.64 -5.10 16 23 C -0.52 -29.15 8.84 25.60 0.23 -28.92 16 24 H 0.05 2.76 7.60 -2.91 -0.02 2.74 16 25 C 0.03 1.58 5.47 84.66 0.46 2.04 16 26 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 27 Si 0.93 44.78 26.44 68.60 1.81 46.59 16 28 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 29 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 30 H -0.24 -10.98 6.05 99.48 0.60 -10.38 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.20 4.80 -2.38 -0.01 1.19 16 34 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.05 1.45 6.63 -2.39 -0.02 1.43 16 36 H 0.04 1.42 6.81 -2.39 -0.02 1.41 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.38 7.41 -2.39 -0.02 1.36 16 39 H 0.40 12.51 7.20 -92.71 -0.67 11.84 16 40 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 41 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.06 1.38 8.03 -2.39 -0.02 1.36 16 48 H 0.04 1.47 8.10 -2.39 -0.02 1.45 16 49 H 0.08 2.72 6.37 -2.39 -0.02 2.71 16 50 H 0.10 2.75 2.49 -2.39 -0.01 2.74 16 51 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.05 2.10 7.05 -2.39 -0.02 2.08 16 53 H 0.06 2.36 6.55 -2.39 -0.02 2.34 16 54 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -73.28 403.10 2.64 -70.65 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.13 Total: 34.03 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.50 Total: 23.71 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.70 Total: -126.45 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.11 Total: -48.53 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.81 Total: 46.59 kcal Total: -73.28 2.64 -70.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646655041.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.543 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds