Wall clock time and date at job start Sat Apr 11 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 H 1.08998 * 109.47261 * 53.64094 * 3 2 1 5 5 C 1.52997 * 109.46950 * 173.64664 * 3 2 1 6 6 C 1.53009 * 109.47057 * 293.64520 * 3 2 1 7 7 H 1.09006 * 109.46827 * 54.25371 * 6 3 2 8 8 N 1.46502 * 109.46889 * 294.26020 * 6 3 2 9 9 C 1.34777 * 120.00237 * 84.99925 * 8 6 3 10 10 O 1.21582 * 119.99808 * 359.97438 * 9 8 6 11 11 N 1.34779 * 119.99947 * 179.97438 * 9 8 6 12 12 C 1.47026 * 125.64523 * 359.68968 * 11 9 8 13 13 C 1.54312 * 107.27048 * 180.96902 * 12 11 9 14 14 C 1.55159 * 102.86642 * 22.52451 * 13 12 11 15 15 C 1.47417 * 125.64928 * 179.97438 * 11 9 8 16 16 C 1.50692 * 109.47056 * 174.25575 * 6 3 2 17 17 O 1.21285 * 119.99680 * 95.43843 * 16 6 3 18 18 N 1.34775 * 120.00105 * 275.43490 * 16 6 3 19 19 C 1.46501 * 120.00082 * 5.11032 * 18 16 6 20 20 C 1.46504 * 119.99789 * 185.10570 * 18 16 6 21 21 H 1.09004 * 109.46998 * 5.19399 * 20 18 16 22 22 C 1.53007 * 109.46683 * 125.18608 * 20 18 16 23 23 C 1.50698 * 109.47438 * 245.18461 * 20 18 16 24 24 H 1.08000 * 119.99929 * 354.34816 * 23 20 18 25 25 C 1.37873 * 120.00075 * 174.33964 * 23 20 18 26 26 N 1.31519 * 120.00200 * 0.02562 * 25 23 20 27 27 Si 1.86799 * 120.00289 * 180.02562 * 25 23 20 28 28 H 1.48506 * 109.46858 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47354 * 119.99727 * 27 25 23 30 30 H 1.48496 * 109.47374 * 240.00461 * 27 25 23 31 31 H 1.09002 * 109.46510 * 62.78671 * 1 2 3 32 32 H 1.08995 * 109.47074 * 182.78784 * 1 2 3 33 33 H 1.08997 * 109.46978 * 302.78892 * 1 2 3 34 34 H 1.08993 * 109.47282 * 239.99888 * 2 1 3 35 35 H 1.09001 * 109.46748 * 119.99681 * 2 1 3 36 36 H 1.09004 * 109.47136 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47156 * 299.99426 * 5 3 2 38 38 H 1.08993 * 109.47288 * 59.99968 * 5 3 2 39 39 H 0.97000 * 119.99596 * 264.99721 * 8 6 3 40 40 H 1.08993 * 109.88169 * 300.51504 * 12 11 9 41 41 H 1.09003 * 109.88341 * 61.68284 * 12 11 9 42 42 H 1.09009 * 110.92432 * 264.11080 * 13 12 11 43 43 H 1.08996 * 110.59068 * 140.78772 * 13 12 11 44 44 H 1.08998 * 111.00686 * 206.22338 * 14 13 12 45 45 H 1.09009 * 110.99832 * 82.37817 * 14 13 12 46 46 H 1.09005 * 110.36910 * 274.67277 * 15 11 9 47 47 H 1.09007 * 110.36741 * 36.88194 * 15 11 9 48 48 H 1.08998 * 109.46526 * 267.28537 * 19 18 16 49 49 H 1.09000 * 109.46791 * 27.28663 * 19 18 16 50 50 H 1.09004 * 109.46852 * 147.28688 * 19 18 16 51 51 H 1.09003 * 109.47397 * 300.00110 * 22 20 18 52 52 H 1.08999 * 109.47100 * 59.99999 * 22 20 18 53 53 H 1.08999 * 109.46667 * 180.02562 * 22 20 18 54 54 H 0.96996 * 120.00457 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5868 1.9882 0.8276 5 6 3.5617 1.4454 0.1596 6 6 1.6646 2.1162 -1.3215 7 1 0.5907 2.0239 -1.4840 8 7 2.3825 1.4675 -2.4215 9 6 1.8774 0.3565 -2.9935 10 8 0.8263 -0.1077 -2.5961 11 7 2.5377 -0.2399 -4.0058 12 6 3.8090 0.2165 -4.5864 13 6 4.1671 -0.7576 -5.7283 14 6 2.7922 -1.3716 -6.1027 15 6 2.1017 -1.4546 -4.7183 16 6 2.0409 3.5744 -1.2666 17 8 3.1023 3.9442 -1.7224 18 7 1.1981 4.4674 -0.7112 19 6 -0.0318 4.0080 -0.0613 20 6 1.5119 5.8977 -0.7574 21 1 2.4099 6.0535 -1.3554 22 6 0.3419 6.6564 -1.3873 23 6 1.7454 6.4063 0.6418 24 1 1.5789 5.7557 1.4876 25 6 2.1716 7.7021 0.8422 26 7 2.3740 8.4945 -0.1878 27 14 2.4617 8.3323 2.5765 28 1 2.1649 7.2524 3.5517 29 1 3.8788 8.7524 2.7200 30 1 1.5726 9.4929 2.8367 31 1 -0.3632 0.4700 -0.9140 32 1 -0.3633 -1.0264 0.0500 33 1 -0.3633 0.5565 0.8639 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.9251 2.4731 0.1592 37 1 3.8292 0.9656 1.1010 38 1 4.0149 0.8999 -0.6680 39 1 3.2212 1.8377 -2.7383 40 1 3.6952 1.2265 -4.9801 41 1 4.5910 0.1982 -3.8272 42 1 4.8526 -1.5304 -5.3802 43 1 4.5913 -0.2171 -6.5744 44 1 2.9129 -2.3630 -6.5392 45 1 2.2412 -0.7145 -6.7757 46 1 2.4294 -2.3463 -4.1837 47 1 1.0177 -1.4588 -4.8329 48 1 -0.8500 4.0213 -0.7813 49 1 0.1103 2.9925 0.3086 50 1 -0.2707 4.6683 0.7724 51 1 0.1730 6.2886 -2.3994 52 1 -0.5561 6.5006 -0.7895 53 1 0.5756 7.7205 -1.4220 54 1 2.6735 9.4063 -0.0469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646655042.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:28 Heat of formation + Delta-G solvation = -83.668221 kcal Electronic energy + Delta-G solvation = -32383.929688 eV Core-core repulsion = 28355.057965 eV Total energy + Delta-G solvation = -4028.871723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99540 -40.65719 -38.78895 -37.37376 -37.03587 -34.81125 -34.64162 -32.37014 -31.62465 -30.95667 -29.88522 -28.16851 -27.64903 -27.22458 -24.78147 -24.39548 -22.98068 -22.07325 -21.42934 -20.53449 -20.30608 -19.20588 -18.51055 -17.76583 -17.71708 -17.26838 -16.94357 -16.58410 -16.27187 -15.83721 -15.29856 -15.13507 -15.03359 -14.50571 -14.45693 -14.24810 -14.20135 -14.07541 -13.89373 -13.69558 -13.58647 -13.51295 -13.23458 -13.07700 -12.93134 -12.80343 -12.72785 -12.66054 -12.27570 -12.26423 -12.19391 -12.11077 -12.09382 -11.79354 -11.74426 -11.58953 -11.54154 -11.19871 -11.12006 -10.65807 -10.50758 -10.08116 -9.51301 -9.37603 -8.15201 -6.29980 1.40112 1.42027 1.42307 1.52965 1.71310 2.11655 2.31014 2.46489 2.99370 3.14321 3.47853 3.69756 3.73732 3.78095 3.88627 4.07256 4.09132 4.29985 4.32603 4.40093 4.50471 4.57506 4.60152 4.65930 4.68134 4.73522 4.78750 4.84016 4.86161 4.88560 4.93798 4.94627 5.00050 5.01307 5.01999 5.09720 5.12434 5.22480 5.26844 5.28381 5.36715 5.37959 5.46444 5.50214 5.54980 5.63885 5.67186 5.98599 6.03859 6.14781 6.71946 6.78659 6.92262 7.24765 7.43279 7.54443 8.90595 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016014 B = 0.003153 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.069626 B = 8879.596385 C = 9520.333171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.095 4.095 4 H 0.084 0.916 5 C -0.138 4.138 6 C 0.165 3.835 7 H 0.109 0.891 8 N -0.722 5.722 9 C 0.719 3.281 10 O -0.602 6.602 11 N -0.640 5.640 12 C 0.088 3.912 13 C -0.120 4.120 14 C -0.125 4.125 15 C 0.120 3.880 16 C 0.499 3.501 17 O -0.585 6.585 18 N -0.594 5.594 19 C 0.072 3.928 20 C 0.264 3.736 21 H 0.015 0.985 22 C -0.129 4.129 23 C -0.534 4.534 24 H 0.061 0.939 25 C 0.016 3.984 26 N -0.918 5.918 27 Si 0.961 3.039 28 H -0.264 1.264 29 H -0.286 1.286 30 H -0.275 1.275 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.403 0.597 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.076 0.924 51 H 0.022 0.978 52 H 0.051 0.949 53 H 0.059 0.941 54 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -21.477 -7.370 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.115 4.115 4 H 0.102 0.898 5 C -0.195 4.195 6 C 0.055 3.945 7 H 0.127 0.873 8 N -0.378 5.378 9 C 0.421 3.579 10 O -0.482 6.482 11 N -0.378 5.378 12 C -0.035 4.035 13 C -0.158 4.158 14 C -0.163 4.163 15 C -0.003 4.003 16 C 0.286 3.714 17 O -0.467 6.467 18 N -0.324 5.324 19 C -0.071 4.071 20 C 0.162 3.838 21 H 0.033 0.967 22 C -0.188 4.188 23 C -0.573 4.573 24 H 0.079 0.921 25 C -0.184 4.184 26 N -0.557 5.557 27 Si 0.786 3.214 28 H -0.188 1.188 29 H -0.212 1.212 30 H -0.201 1.201 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.239 0.761 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.041 0.959 52 H 0.070 0.930 53 H 0.078 0.922 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.617 -21.375 -7.290 22.592 hybrid contribution 0.731 1.334 0.632 1.647 sum 0.114 -20.041 -6.658 21.118 Atomic orbital electron populations 1.21712 0.95110 1.01429 1.01408 1.21485 0.96850 0.93777 1.01739 1.21569 0.97253 0.97812 0.94837 0.89782 1.21706 0.94724 1.00920 1.02179 1.20662 0.98235 0.87200 0.88378 0.87347 1.44805 1.27438 1.28296 1.37296 1.15429 0.83096 0.80059 0.79308 1.90884 1.23962 1.67128 1.66214 1.47691 1.24975 1.30035 1.35132 1.22215 0.85051 0.99132 0.97072 1.22607 0.97696 0.98410 0.97059 1.22800 0.95447 1.03276 0.94741 1.22235 0.99800 0.85800 0.92425 1.20973 0.83919 0.88521 0.77952 1.90604 1.24658 1.81146 1.50260 1.48164 1.22159 1.07777 1.54256 1.21979 0.85765 1.00908 0.98403 1.18563 0.93968 0.75329 0.95926 0.96698 1.21842 0.98295 1.01707 0.96937 1.21594 1.45750 0.97381 0.92553 0.92092 1.25705 0.94797 0.97025 1.00860 1.70052 1.46672 1.07510 1.31514 0.85464 0.77511 0.78436 0.79962 1.18843 1.21235 1.20099 0.92574 0.93179 0.92613 0.92268 0.91581 0.94857 0.91002 0.92547 0.76067 0.92303 0.91420 0.89099 0.88550 0.87268 0.90869 0.91069 0.91723 0.91653 0.89640 0.90513 0.95850 0.93031 0.92208 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.86 71.99 0.64 -2.80 16 2 C -0.10 -2.58 4.86 30.60 0.15 -2.43 16 3 C -0.09 -2.70 1.86 -10.79 -0.02 -2.72 16 4 H 0.08 2.40 6.60 -2.39 -0.02 2.38 16 5 C -0.14 -4.02 8.78 71.98 0.63 -3.39 16 6 C 0.16 5.31 1.42 44.25 0.06 5.38 16 7 H 0.11 3.48 4.97 -2.38 -0.01 3.47 16 8 N -0.72 -21.83 3.96 -461.40 -1.83 -23.66 16 9 C 0.72 20.74 7.08 179.05 1.27 22.01 16 10 O -0.60 -19.50 11.66 -3.97 -0.05 -19.55 16 11 N -0.64 -14.38 3.33 -829.75 -2.76 -17.14 16 12 C 0.09 1.53 6.14 86.72 0.53 2.07 16 13 C -0.12 -1.24 6.95 31.78 0.22 -1.02 16 14 C -0.12 -1.32 7.08 31.99 0.23 -1.09 16 15 C 0.12 2.05 6.91 86.86 0.60 2.65 16 16 C 0.50 20.61 6.08 87.65 0.53 21.15 16 17 O -0.59 -28.47 14.82 -3.04 -0.05 -28.52 16 18 N -0.59 -25.17 2.75 -826.78 -2.28 -27.44 16 19 C 0.07 2.34 8.70 127.77 1.11 3.45 16 20 C 0.26 13.61 2.51 44.25 0.11 13.72 16 21 H 0.02 0.92 6.95 -2.38 -0.02 0.91 16 22 C -0.13 -6.14 8.94 71.98 0.64 -5.49 16 23 C -0.53 -28.92 8.09 25.60 0.21 -28.71 16 24 H 0.06 3.21 7.46 -2.91 -0.02 3.19 16 25 C 0.02 0.86 5.33 84.65 0.45 1.31 16 26 N -0.92 -53.13 11.75 21.45 0.25 -52.88 16 27 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 28 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 30 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 31 H 0.06 1.59 4.97 -2.39 -0.01 1.58 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.70 5.05 -2.39 -0.01 1.68 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.03 1.18 7.01 -2.39 -0.02 1.16 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.57 7.46 -2.39 -0.02 1.55 16 39 H 0.40 12.45 6.76 -92.71 -0.63 11.82 16 40 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 44 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.06 1.28 8.03 -2.38 -0.02 1.26 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.09 2.34 4.95 -2.39 -0.01 2.32 16 50 H 0.08 2.59 7.28 -2.39 -0.02 2.57 16 51 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.05 2.20 7.55 -2.39 -0.02 2.19 16 53 H 0.06 3.14 6.53 -2.39 -0.02 3.13 16 54 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -69.38 404.45 2.96 -66.43 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: 0.26 Total: 33.43 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 7.37 Total: 24.08 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -6.61 Total: -121.12 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -0.09 Total: -48.06 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.38 2.96 -66.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646655042.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.243 kcal (2) G-P(sol) polarization free energy of solvation -69.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds