Wall clock time and date at job start Sat Apr 11 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47393 * 2 1 4 4 H 1.08994 * 109.47097 * 305.00734 * 3 2 1 5 5 C 1.52998 * 109.47354 * 184.99825 * 3 2 1 6 6 N 1.46506 * 109.47011 * 185.00376 * 5 3 2 7 7 C 1.34777 * 119.99751 * 180.02562 * 6 5 3 8 8 O 1.21275 * 120.00144 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.99518 * 179.97438 * 7 6 5 10 10 H 1.08998 * 109.40497 * 59.82719 * 9 7 6 11 11 C 1.53080 * 109.32990 * 179.61214 * 9 7 6 12 12 C 1.53348 * 108.42427 * 168.98585 * 11 9 7 13 13 C 1.52919 * 108.67597 * 292.46937 * 12 11 9 14 14 N 1.45752 * 110.48812 * 50.75187 * 13 12 11 15 15 C 1.46495 * 117.94844 * 161.21025 * 14 13 12 16 16 C 1.53000 * 109.47464 * 238.05271 * 15 14 13 17 17 C 1.53007 * 109.46926 * 358.04865 * 15 14 13 18 18 C 1.52995 * 109.47518 * 118.05059 * 15 14 13 19 19 C 1.33353 * 124.10947 * 340.93142 * 14 13 12 20 20 O 1.21277 * 118.25239 * 182.19948 * 19 14 13 21 21 N 1.46503 * 109.46740 * 65.00106 * 3 2 1 22 22 C 1.36945 * 119.99935 * 274.99934 * 21 3 2 23 23 H 1.07999 * 119.99867 * 0.02562 * 22 21 3 24 24 C 1.38809 * 119.99929 * 179.97438 * 22 21 3 25 25 N 1.31618 * 120.00271 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00043 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47145 * 90.00126 * 26 24 22 28 28 H 1.48494 * 109.47455 * 210.00634 * 26 24 22 29 29 H 1.48500 * 109.47380 * 330.00646 * 26 24 22 30 30 H 1.09007 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47251 * 299.99820 * 1 2 3 32 32 H 1.08996 * 109.47019 * 60.00142 * 1 2 3 33 33 H 1.09004 * 109.47164 * 240.00085 * 2 1 3 34 34 H 1.09002 * 109.47413 * 120.00434 * 2 1 3 35 35 H 1.08998 * 109.46578 * 65.00325 * 5 3 2 36 36 H 1.09002 * 109.47029 * 305.00391 * 5 3 2 37 37 H 0.96999 * 119.99792 * 0.02562 * 6 5 3 38 38 H 1.08993 * 109.67201 * 288.72099 * 11 9 7 39 39 H 1.09001 * 109.66893 * 49.21691 * 11 9 7 40 40 H 1.08994 * 109.60050 * 52.22652 * 12 11 9 41 41 H 1.08996 * 109.59690 * 172.71339 * 12 11 9 42 42 H 1.08997 * 109.29853 * 290.44393 * 13 12 11 43 43 H 1.08991 * 109.30158 * 171.06398 * 13 12 11 44 44 H 1.08999 * 109.47160 * 53.25896 * 16 15 14 45 45 H 1.08997 * 109.47615 * 173.26255 * 16 15 14 46 46 H 1.09003 * 109.47348 * 293.26414 * 16 15 14 47 47 H 1.08999 * 109.46481 * 60.00162 * 17 15 14 48 48 H 1.09000 * 109.46729 * 179.97438 * 17 15 14 49 49 H 1.08997 * 109.47265 * 300.00314 * 17 15 14 50 50 H 1.09002 * 109.47433 * 59.99967 * 18 15 14 51 51 H 1.09003 * 109.47627 * 180.02562 * 18 15 14 52 52 H 1.09002 * 109.46955 * 300.00206 * 18 15 14 53 53 H 0.97000 * 120.00045 * 95.00225 * 21 3 2 54 54 H 0.96995 * 120.00574 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 7 4.0631 2.8168 -0.0058 7 6 5.3857 3.0630 -0.0866 8 8 6.1634 2.1484 -0.2581 9 6 5.8981 4.4749 0.0361 10 1 5.6101 4.8816 1.0054 11 6 7.4244 4.4720 -0.0809 12 6 7.9017 5.9214 -0.2318 13 6 7.4274 6.4549 -1.5841 14 7 6.0002 6.2141 -1.7555 15 6 5.2872 7.0017 -2.7642 16 6 4.1448 7.7704 -2.0973 17 6 6.2551 7.9910 -3.4165 18 6 4.7172 6.0663 -3.8324 19 6 5.3036 5.3181 -1.0553 20 8 4.1271 5.1766 -1.3133 21 7 1.6525 2.0974 1.2519 22 6 0.4156 2.6734 1.3689 23 1 -0.2742 2.6446 0.5384 24 6 0.0482 3.2935 2.5552 25 7 0.8887 3.3283 3.5674 26 14 -1.6392 4.0786 2.7151 27 1 -2.6053 3.0752 3.2300 28 1 -1.5652 5.2237 3.6577 29 1 -2.0888 4.5611 1.3846 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8498 1.0377 -1.0960 36 1 3.9954 0.8310 0.6659 37 1 3.4411 3.5483 0.1317 38 1 7.8604 4.0336 0.8167 39 1 7.7243 3.8934 -0.9547 40 1 7.4816 6.5299 0.5691 41 1 8.9902 5.9544 -0.1869 42 1 7.9756 5.9533 -2.3816 43 1 7.6208 7.5262 -1.6367 44 1 4.5354 8.3461 -1.2581 45 1 3.6903 8.4465 -2.8215 46 1 3.3946 7.0664 -1.7370 47 1 7.0690 7.4433 -3.8916 48 1 5.7247 8.5767 -4.1673 49 1 6.6612 8.6574 -2.6555 50 1 4.0277 5.3615 -3.3677 51 1 4.1871 6.6524 -4.5832 52 1 5.5311 5.5187 -4.3075 53 1 2.2720 2.1230 1.9978 54 1 0.6319 3.7612 4.3965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665833510.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:33 Heat of formation + Delta-G solvation = -89.940033 kcal Electronic energy + Delta-G solvation = -32078.136528 eV Core-core repulsion = 28048.992839 eV Total energy + Delta-G solvation = -4029.143689 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30671 -40.49724 -38.36866 -37.87721 -36.81155 -35.19070 -34.13586 -32.68431 -31.53491 -31.04094 -29.49847 -28.45457 -28.22493 -26.03831 -25.25504 -24.05922 -23.64000 -21.87784 -21.59490 -20.95685 -19.33616 -19.19261 -18.37980 -17.77340 -17.35041 -16.90591 -16.88652 -16.36403 -16.07977 -15.82705 -15.40039 -15.19817 -15.05873 -14.80685 -14.59472 -14.51173 -14.47009 -14.34223 -14.06351 -13.70250 -13.24760 -13.14884 -13.07085 -13.00081 -12.82968 -12.80846 -12.77497 -12.50559 -12.42703 -12.37055 -12.12740 -12.11398 -11.99799 -11.90095 -11.84219 -11.76240 -11.65166 -11.35760 -11.03809 -10.85338 -10.41688 -9.98179 -9.61909 -8.98066 -7.88339 -5.15047 1.32146 1.47876 1.48216 1.55989 1.60381 2.01981 2.35213 2.58740 3.42415 3.44775 3.53180 3.77258 3.81366 3.87540 3.93592 3.96348 3.99922 4.12713 4.17689 4.26345 4.35903 4.45277 4.46047 4.53402 4.58681 4.67853 4.69607 4.71029 4.81412 4.83360 4.85314 4.87627 4.96234 5.02718 5.04733 5.06349 5.07831 5.11956 5.18315 5.23616 5.31762 5.34027 5.42887 5.47215 5.56609 5.59416 5.70150 5.70983 6.31985 6.45538 6.58527 7.12423 7.21029 7.39690 8.10312 8.36696 9.34794 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.003544 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.544850 B = 7899.306580 C = 8767.759556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.167 3.833 4 H 0.047 0.953 5 C 0.122 3.878 6 N -0.698 5.698 7 C 0.522 3.478 8 O -0.579 6.579 9 C -0.125 4.125 10 H 0.131 0.869 11 C -0.098 4.098 12 C -0.128 4.128 13 C 0.098 3.902 14 N -0.587 5.587 15 C 0.161 3.839 16 C -0.160 4.160 17 C -0.147 4.147 18 C -0.160 4.160 19 C 0.520 3.480 20 O -0.562 6.562 21 N -0.725 5.725 22 C -0.216 4.216 23 H 0.075 0.925 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.959 3.041 27 H -0.290 1.290 28 H -0.300 1.300 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.412 0.588 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.046 0.954 51 H 0.075 0.925 52 H 0.054 0.946 53 H 0.372 0.628 54 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.799 9.670 -14.131 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.058 3.942 4 H 0.065 0.935 5 C -0.003 4.003 6 N -0.348 5.348 7 C 0.307 3.693 8 O -0.460 6.460 9 C -0.149 4.149 10 H 0.148 0.852 11 C -0.136 4.136 12 C -0.165 4.165 13 C -0.023 4.023 14 N -0.319 5.319 15 C 0.077 3.923 16 C -0.218 4.218 17 C -0.204 4.204 18 C -0.218 4.218 19 C 0.307 3.693 20 O -0.441 6.441 21 N -0.366 5.366 22 C -0.348 4.348 23 H 0.093 0.907 24 C -0.264 4.264 25 N -0.618 5.618 26 Si 0.790 3.210 27 H -0.218 1.218 28 H -0.226 1.226 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.097 0.903 50 H 0.065 0.935 51 H 0.094 0.906 52 H 0.073 0.927 53 H 0.204 0.796 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.557 9.027 -14.454 23.760 hybrid contribution -1.444 0.371 1.027 1.811 sum 15.113 9.398 -13.427 22.294 Atomic orbital electron populations 1.21691 0.95877 1.00691 1.01692 1.21972 0.96738 0.96977 1.01120 1.20654 0.90916 0.93373 0.89277 0.93542 1.21570 0.94553 0.83050 1.01131 1.46111 1.07507 1.10584 1.70643 1.20326 0.82285 0.90636 0.76042 1.90628 1.56565 1.46900 1.51893 1.21529 1.00378 0.92200 1.00800 0.85155 1.21498 0.89128 0.98804 1.04130 1.21954 1.03863 0.93858 0.96874 1.21876 0.78485 1.03532 0.98432 1.47535 1.10533 1.37071 1.36780 1.20596 0.92975 0.91189 0.87534 1.22186 0.98703 0.99886 1.01055 1.22153 0.98858 0.98092 1.01283 1.22178 1.01255 1.00162 0.98212 1.19584 0.86406 0.80553 0.82720 1.90691 1.17523 1.68121 1.67800 1.42500 1.15773 1.66157 1.12126 1.19467 0.92344 1.25595 0.97427 0.90706 1.25348 1.01079 1.03337 0.96589 1.69799 1.36712 1.51084 1.04239 0.85341 0.80891 0.77589 0.77204 1.21766 1.22649 1.19885 0.92509 0.93208 0.93552 0.90782 0.93184 0.90939 0.92539 0.75047 0.89859 0.91270 0.90454 0.86234 0.90407 0.87262 0.92584 0.90465 0.93356 0.90674 0.89977 0.90305 0.93496 0.90564 0.92713 0.79551 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.18 71.98 0.66 -4.50 16 2 C -0.13 -4.53 5.61 30.59 0.17 -4.36 16 3 C 0.17 6.69 2.59 44.99 0.12 6.81 16 4 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 5 C 0.12 4.57 5.23 86.38 0.45 5.02 16 6 N -0.70 -27.00 4.87 -463.06 -2.26 -29.26 16 7 C 0.52 18.82 7.06 87.65 0.62 19.43 16 8 O -0.58 -23.04 15.78 -3.01 -0.05 -23.09 16 9 C -0.13 -3.50 2.78 -12.42 -0.03 -3.54 16 10 H 0.13 3.54 8.14 -2.39 -0.02 3.52 16 11 C -0.10 -2.00 4.78 30.74 0.15 -1.85 16 12 C -0.13 -1.54 6.02 30.68 0.18 -1.35 16 13 C 0.10 1.19 5.24 86.49 0.45 1.64 16 14 N -0.59 -12.10 2.79 -779.60 -2.17 -14.27 16 15 C 0.16 3.08 1.03 3.61 0.00 3.08 16 16 C -0.16 -3.58 8.22 71.98 0.59 -2.99 16 17 C -0.15 -1.54 7.28 71.98 0.52 -1.02 16 18 C -0.16 -3.58 8.38 71.98 0.60 -2.98 16 19 C 0.52 14.91 6.45 87.72 0.57 15.48 16 20 O -0.56 -20.25 10.32 -3.02 -0.03 -20.29 16 21 N -0.73 -35.58 4.51 -322.94 -1.46 -37.04 16 22 C -0.22 -11.66 7.75 84.03 0.65 -11.01 16 23 H 0.08 3.94 7.32 -2.91 -0.02 3.92 16 24 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 25 N -0.97 -58.54 13.06 21.65 0.28 -58.26 16 26 Si 0.96 46.49 29.55 68.60 2.03 48.52 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 29 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.05 2.16 5.99 -2.39 -0.01 2.15 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.41 17.46 6.80 -92.71 -0.63 16.83 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.59 7.71 -2.39 -0.02 1.57 16 40 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 41 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.81 8.06 -2.39 -0.02 0.79 16 43 H 0.11 0.77 6.00 -2.39 -0.01 0.76 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.05 1.48 6.08 -2.39 -0.01 1.47 16 47 H 0.07 0.64 7.59 -2.39 -0.02 0.62 16 48 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.08 0.62 6.82 -2.39 -0.02 0.61 16 50 H 0.05 1.43 5.98 -2.39 -0.01 1.42 16 51 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.37 20.02 7.80 -92.71 -0.72 19.29 16 54 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -70.77 409.94 2.06 -68.72 By element: Atomic # 1 Polarization: 51.14 SS G_CDS: -0.47 Total: 50.67 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.18 Total: 14.30 kcal Atomic # 7 Polarization: -133.23 SS G_CDS: -5.60 Total: -138.83 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.08 Total: -43.37 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -70.77 2.06 -68.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665833510.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.223 kcal (2) G-P(sol) polarization free energy of solvation -70.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds