Wall clock time and date at job start Sat Apr 11 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47502 * 2 1 4 4 H 1.08999 * 109.47192 * 305.00036 * 3 2 1 5 5 C 1.53004 * 109.47455 * 185.00041 * 3 2 1 6 6 N 1.46500 * 109.46977 * 185.00028 * 5 3 2 7 7 C 1.34782 * 119.99563 * 179.97438 * 6 5 3 8 8 O 1.21272 * 120.00022 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.99784 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.33105 * 299.78581 * 9 7 6 11 11 C 1.53072 * 109.40235 * 180.02562 * 9 7 6 12 12 C 1.53348 * 108.42621 * 190.97161 * 11 9 7 13 13 C 1.52920 * 108.67433 * 67.52596 * 12 11 9 14 14 N 1.45750 * 110.48861 * 309.24903 * 13 12 11 15 15 C 1.46502 * 117.94519 * 199.07648 * 14 13 12 16 16 C 1.53004 * 109.47044 * 239.88502 * 15 14 13 17 17 C 1.53005 * 109.47026 * 359.88118 * 15 14 13 18 18 C 1.52996 * 109.47423 * 119.88189 * 15 14 13 19 19 C 1.33346 * 124.10835 * 19.07382 * 14 13 12 20 20 O 1.21286 * 118.24661 * 177.75766 * 19 14 13 21 21 N 1.46500 * 109.47030 * 64.99865 * 3 2 1 22 22 C 1.36945 * 120.00101 * 275.00129 * 21 3 2 23 23 H 1.07998 * 119.99505 * 0.02562 * 22 21 3 24 24 C 1.38806 * 119.99950 * 180.02562 * 22 21 3 25 25 N 1.31620 * 120.00473 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99871 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47031 * 59.99989 * 26 24 22 28 28 H 1.48498 * 109.47170 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47266 * 299.99747 * 26 24 22 30 30 H 1.09002 * 109.47015 * 300.00246 * 1 2 3 31 31 H 1.09004 * 109.46754 * 59.99781 * 1 2 3 32 32 H 1.08994 * 109.46961 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47015 * 239.99754 * 2 1 3 34 34 H 1.09004 * 109.47006 * 119.99731 * 2 1 3 35 35 H 1.08996 * 109.47035 * 64.99390 * 5 3 2 36 36 H 1.08996 * 109.46509 * 304.99878 * 5 3 2 37 37 H 0.96996 * 120.00178 * 359.97438 * 6 5 3 38 38 H 1.08991 * 109.67383 * 71.23537 * 11 9 7 39 39 H 1.08998 * 109.67006 * 310.70332 * 11 9 7 40 40 H 1.08993 * 109.60200 * 187.28607 * 12 11 9 41 41 H 1.09007 * 109.60093 * 307.77312 * 12 11 9 42 42 H 1.09000 * 109.29761 * 69.55913 * 13 12 11 43 43 H 1.08995 * 109.29747 * 188.93353 * 13 12 11 44 44 H 1.09001 * 109.46804 * 53.23645 * 16 15 14 45 45 H 1.09004 * 109.47275 * 173.23901 * 16 15 14 46 46 H 1.09001 * 109.46793 * 293.23650 * 16 15 14 47 47 H 1.08994 * 109.46880 * 60.00659 * 17 15 14 48 48 H 1.09006 * 109.46845 * 180.02562 * 17 15 14 49 49 H 1.09000 * 109.47077 * 300.00244 * 17 15 14 50 50 H 1.09004 * 109.47089 * 60.00181 * 18 15 14 51 51 H 1.09006 * 109.47473 * 179.97438 * 18 15 14 52 52 H 1.09001 * 109.47025 * 300.00389 * 18 15 14 53 53 H 0.97000 * 119.99947 * 95.00161 * 21 3 2 54 54 H 0.96997 * 120.00386 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5650 1.4443 -0.1257 6 7 4.0632 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1636 2.1481 -0.2564 9 6 5.8985 4.4745 0.0380 10 1 5.4699 5.0850 -0.7568 11 6 7.4240 4.4745 -0.0882 12 6 7.9434 5.8607 0.3118 13 6 7.6952 6.0640 1.8070 14 7 6.3083 5.7632 2.1394 15 6 5.7731 6.2928 3.3961 16 6 5.3140 5.1340 4.2834 17 6 6.8620 7.0883 4.1191 18 6 4.5847 7.2092 3.0985 19 6 5.4960 5.0363 1.3713 20 8 4.3722 4.8168 1.7710 21 7 1.6525 2.0974 1.2518 22 6 0.4157 2.6735 1.3688 23 1 -0.2741 2.6446 0.5383 24 6 0.0487 3.2946 2.5547 25 7 0.8892 3.3294 3.5670 26 14 -1.6387 4.0798 2.7145 27 1 -2.6864 3.0471 2.5111 28 1 -1.7833 4.6709 4.0691 29 1 -1.7881 5.1449 1.6906 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8500 1.0376 -1.0960 36 1 3.9954 0.8311 0.6659 37 1 3.4411 3.5483 0.1308 38 1 7.7070 4.2598 -1.1186 39 1 7.8469 3.7190 0.5741 40 1 9.0120 5.9240 0.1066 41 1 7.4138 6.6270 -0.2543 42 1 8.3526 5.4051 2.3741 43 1 7.9126 7.0989 2.0708 44 1 6.1285 4.4185 4.3969 45 1 5.0281 5.5174 5.2629 46 1 4.4583 4.6404 3.8225 47 1 7.1890 7.9138 3.4870 48 1 6.4639 7.4819 5.0544 49 1 7.7087 6.4354 4.3312 50 1 3.8089 6.6424 2.5834 51 1 4.1862 7.6028 4.0336 52 1 4.9118 8.0347 2.4663 53 1 2.2720 2.1231 1.9978 54 1 0.6326 3.7631 4.3958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665833511.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:36 Heat of formation + Delta-G solvation = -86.760551 kcal Electronic energy + Delta-G solvation = -32591.164908 eV Core-core repulsion = 28562.159092 eV Total energy + Delta-G solvation = -4029.005816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23882 -40.46031 -38.32073 -37.80925 -36.77496 -35.14763 -34.08713 -32.64292 -31.47977 -30.97597 -29.46396 -28.43288 -28.21823 -25.99775 -25.19348 -24.01717 -23.58830 -21.84407 -21.55930 -20.91586 -19.23009 -19.15298 -18.35116 -17.68825 -17.27965 -17.00731 -16.73621 -16.22698 -16.11922 -15.78168 -15.36670 -15.14687 -14.98680 -14.78770 -14.55581 -14.46228 -14.43431 -14.26920 -14.07479 -13.64687 -13.23266 -13.14838 -13.06677 -12.97982 -12.79422 -12.74856 -12.74077 -12.47996 -12.41257 -12.31495 -12.14804 -12.08707 -11.97256 -11.86619 -11.80247 -11.73081 -11.62725 -11.31381 -10.99021 -10.79882 -10.31685 -9.95846 -9.54863 -8.90026 -7.79117 -5.06562 1.34088 1.47426 1.49337 1.54465 1.72550 2.10070 2.37059 2.61921 3.48091 3.51553 3.57540 3.80599 3.85772 3.92012 3.97007 3.98593 4.01359 4.13404 4.20333 4.28836 4.38970 4.47517 4.48736 4.55554 4.61320 4.67184 4.69995 4.72767 4.82090 4.86433 4.86853 4.87940 4.97508 5.05322 5.07200 5.08823 5.09947 5.13247 5.20230 5.23435 5.35049 5.40642 5.46944 5.49666 5.58994 5.62897 5.72803 5.76552 6.37204 6.54983 6.61836 7.20399 7.30447 7.45321 8.18774 8.43668 9.42370 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.004521 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.988659 B = 6191.405580 C = 8330.666556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.165 3.835 4 H 0.055 0.945 5 C 0.121 3.879 6 N -0.698 5.698 7 C 0.520 3.480 8 O -0.580 6.580 9 C -0.120 4.120 10 H 0.143 0.857 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.097 3.903 14 N -0.589 5.589 15 C 0.168 3.832 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.156 4.156 19 C 0.506 3.494 20 O -0.547 6.547 21 N -0.723 5.723 22 C -0.220 4.220 23 H 0.076 0.924 24 C -0.069 4.069 25 N -0.956 5.956 26 Si 0.956 3.044 27 H -0.281 1.281 28 H -0.304 1.304 29 H -0.282 1.282 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.412 0.588 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.042 0.958 51 H 0.064 0.936 52 H 0.068 0.932 53 H 0.370 0.630 54 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.449 8.931 -6.640 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.056 3.944 4 H 0.073 0.927 5 C -0.004 4.004 6 N -0.348 5.348 7 C 0.306 3.694 8 O -0.461 6.461 9 C -0.144 4.144 10 H 0.161 0.839 11 C -0.135 4.135 12 C -0.162 4.162 13 C -0.024 4.024 14 N -0.322 5.322 15 C 0.084 3.916 16 C -0.216 4.216 17 C -0.202 4.202 18 C -0.214 4.214 19 C 0.292 3.708 20 O -0.425 6.425 21 N -0.363 5.363 22 C -0.352 4.352 23 H 0.094 0.906 24 C -0.262 4.262 25 N -0.606 5.606 26 Si 0.787 3.213 27 H -0.207 1.207 28 H -0.231 1.231 29 H -0.209 1.209 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.250 0.750 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.062 0.938 51 H 0.083 0.917 52 H 0.086 0.914 53 H 0.202 0.798 54 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 17.221 8.233 -6.607 20.199 hybrid contribution -1.540 0.314 0.955 1.839 sum 15.681 8.547 -5.652 18.732 Atomic orbital electron populations 1.21683 0.95851 1.00567 1.01764 1.21983 0.96736 0.97218 1.00897 1.20696 0.90827 0.93351 0.89539 0.92739 1.21581 0.94643 0.83048 1.01093 1.46113 1.07591 1.10653 1.70451 1.20386 0.82264 0.90760 0.75997 1.90629 1.56566 1.46866 1.52086 1.21523 1.01283 0.94135 0.97418 0.83928 1.21496 0.89161 0.98876 1.04001 1.21942 1.04385 0.95603 0.94295 1.21869 0.80112 1.03376 0.97084 1.47493 1.13021 1.51139 1.20569 1.20451 0.94801 0.93064 0.83320 1.22149 1.01289 0.98565 0.99550 1.22139 0.97182 1.00034 1.00821 1.22122 0.98310 0.98839 1.02165 1.19872 0.85421 0.79076 0.86416 1.90906 1.21334 1.58077 1.72136 1.42488 1.15676 1.65999 1.12142 1.19376 0.92307 1.26089 0.97395 0.90577 1.25356 1.00698 1.03329 0.96793 1.69851 1.36414 1.50367 1.03978 0.85470 0.81394 0.78544 0.75867 1.20697 1.23065 1.20896 0.93423 0.93170 0.92742 0.90523 0.93894 0.89865 0.93917 0.75018 0.89082 0.92117 0.86283 0.89830 0.91188 0.87331 0.93572 0.91642 0.93704 0.89582 0.90518 0.90885 0.93845 0.91724 0.91353 0.79799 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.18 71.98 0.66 -4.44 16 2 C -0.13 -4.53 5.61 30.59 0.17 -4.36 16 3 C 0.16 6.53 2.59 44.99 0.12 6.64 16 4 H 0.05 2.14 8.08 -2.39 -0.02 2.12 16 5 C 0.12 4.50 5.23 86.38 0.45 4.95 16 6 N -0.70 -26.49 4.87 -463.07 -2.26 -28.74 16 7 C 0.52 18.42 7.06 87.65 0.62 19.04 16 8 O -0.58 -22.92 15.79 -3.01 -0.05 -22.97 16 9 C -0.12 -3.24 2.78 -12.43 -0.03 -3.27 16 10 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 11 C -0.10 -1.93 4.78 30.73 0.15 -1.78 16 12 C -0.12 -1.47 6.02 30.68 0.18 -1.29 16 13 C 0.10 1.40 5.24 86.49 0.45 1.85 16 14 N -0.59 -14.38 2.79 -779.58 -2.17 -16.56 16 15 C 0.17 4.29 1.03 3.60 0.00 4.29 16 16 C -0.16 -5.24 8.24 71.98 0.59 -4.65 16 17 C -0.14 -2.27 7.31 71.98 0.53 -1.74 16 18 C -0.16 -4.47 8.36 71.98 0.60 -3.87 16 19 C 0.51 16.01 6.45 87.72 0.57 16.57 16 20 O -0.55 -23.06 10.29 -3.05 -0.03 -23.09 16 21 N -0.72 -36.25 4.51 -322.94 -1.46 -37.70 16 22 C -0.22 -11.96 7.75 84.03 0.65 -11.31 16 23 H 0.08 3.97 7.32 -2.91 -0.02 3.95 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.96 -59.95 13.06 21.65 0.28 -59.67 16 26 Si 0.96 47.30 29.55 68.60 2.03 49.33 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 29 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 30 H 0.05 2.09 5.99 -2.39 -0.01 2.07 16 31 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.41 17.08 6.77 -92.71 -0.63 16.46 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.46 7.73 -2.39 -0.02 1.45 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.87 8.12 -2.38 -0.02 0.85 16 42 H 0.07 0.96 8.04 -2.39 -0.02 0.94 16 43 H 0.11 0.98 6.02 -2.39 -0.01 0.97 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 2.01 6.05 -2.39 -0.01 1.99 16 47 H 0.09 0.95 6.74 -2.39 -0.02 0.94 16 48 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.07 1.00 7.63 -2.39 -0.02 0.99 16 50 H 0.04 1.67 6.01 -2.38 -0.01 1.65 16 51 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 52 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 53 H 0.37 21.12 7.80 -92.71 -0.72 20.39 16 54 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -74.60 409.91 2.06 -72.53 By element: Atomic # 1 Polarization: 54.21 SS G_CDS: -0.46 Total: 53.75 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.18 Total: 13.11 kcal Atomic # 7 Polarization: -137.07 SS G_CDS: -5.60 Total: -142.67 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -0.08 Total: -46.05 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -74.60 2.06 -72.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665833511.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.226 kcal (2) G-P(sol) polarization free energy of solvation -74.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds