Wall clock time and date at job start Sat Apr 11 2020 05:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47311 * 2 1 4 4 H 1.09005 * 109.47190 * 302.97246 * 3 2 1 5 5 C 1.52994 * 109.47249 * 182.96648 * 3 2 1 6 6 N 1.46502 * 109.47111 * 185.00228 * 5 3 2 7 7 C 1.34777 * 119.99963 * 180.02562 * 6 5 3 8 8 O 1.21287 * 119.99865 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00009 * 180.02562 * 7 6 5 10 10 H 1.08997 * 109.47285 * 60.00247 * 9 7 6 11 11 C 1.53005 * 109.46902 * 180.02562 * 9 7 6 12 12 C 1.53003 * 109.46725 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47113 * 299.99770 * 12 11 9 14 14 H 1.08999 * 109.47009 * 300.00046 * 13 12 11 15 15 C 1.53004 * 109.46839 * 180.02562 * 13 12 11 16 16 C 1.52994 * 109.47192 * 60.00137 * 13 12 11 17 17 C 1.52999 * 109.46973 * 299.99899 * 9 7 6 18 18 N 1.46905 * 109.46963 * 62.96737 * 3 2 1 19 19 C 1.46901 * 110.99953 * 65.52058 * 18 3 2 20 20 C 1.50696 * 109.47030 * 182.18210 * 19 18 3 21 21 O 1.21288 * 120.00368 * 0.02562 * 20 19 18 22 22 N 1.34786 * 119.99463 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99383 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00554 * 359.97438 * 23 22 20 25 25 C 1.38954 * 119.99819 * 180.02562 * 23 22 20 26 26 N 1.31407 * 119.99829 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00090 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47387 * 59.99509 * 27 25 23 29 29 H 1.48499 * 109.47175 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47060 * 299.99606 * 27 25 23 31 31 H 1.09001 * 109.46732 * 294.77489 * 1 2 3 32 32 H 1.09003 * 109.47115 * 54.77301 * 1 2 3 33 33 H 1.08998 * 109.47113 * 174.77248 * 1 2 3 34 34 H 1.09000 * 109.46655 * 240.00552 * 2 1 3 35 35 H 1.08997 * 109.47263 * 120.00381 * 2 1 3 36 36 H 1.08999 * 109.47218 * 65.00196 * 5 3 2 37 37 H 1.09001 * 109.47350 * 305.00032 * 5 3 2 38 38 H 0.97000 * 120.00177 * 359.97438 * 6 5 3 39 39 H 1.09001 * 109.47296 * 299.99492 * 11 9 7 40 40 H 1.08997 * 109.47035 * 59.99988 * 11 9 7 41 41 H 1.08997 * 109.47322 * 60.00227 * 12 11 9 42 42 H 1.09002 * 109.47155 * 179.97438 * 12 11 9 43 43 H 1.09003 * 109.47254 * 60.00604 * 15 13 12 44 44 H 1.09001 * 109.46596 * 180.02562 * 15 13 12 45 45 H 1.08999 * 109.47140 * 299.99700 * 15 13 12 46 46 H 1.09009 * 109.47131 * 60.00032 * 16 13 12 47 47 H 1.09003 * 109.47231 * 179.97438 * 16 13 12 48 48 H 1.08999 * 109.47009 * 299.99915 * 17 9 7 49 49 H 1.08998 * 109.47382 * 60.00224 * 17 9 7 50 50 H 1.00900 * 111.00359 * 189.47621 * 18 3 2 51 51 H 1.08999 * 109.47124 * 302.18517 * 19 18 3 52 52 H 1.09004 * 109.46915 * 62.18189 * 19 18 3 53 53 H 0.96996 * 119.99965 * 0.02562 * 22 20 19 54 54 H 0.96999 * 120.00242 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4430 -0.0746 6 7 4.0624 2.8169 0.0455 7 6 5.3870 3.0625 0.0060 8 8 6.1699 2.1460 -0.1295 9 6 5.8955 4.4757 0.1303 10 1 5.5787 4.8931 1.0860 11 6 7.4236 4.4764 0.0542 12 6 7.9397 5.9113 0.1797 13 6 7.3720 6.7590 -0.9604 14 1 7.6884 6.3413 -1.9162 15 6 7.8886 8.1937 -0.8353 16 6 5.8439 6.7582 -0.8844 17 6 5.3282 5.3238 -1.0098 18 7 1.6098 2.1139 1.2337 19 6 2.2440 1.5075 2.4118 20 6 1.7389 2.1856 3.6592 21 8 0.9297 3.0852 3.5752 22 7 2.1855 1.7916 4.8683 23 6 1.7255 2.4082 6.0031 24 1 1.0057 3.2098 5.9283 25 6 2.1863 2.0025 7.2497 26 7 3.0626 1.0274 7.3408 27 14 1.5591 2.8420 8.7959 28 1 0.0861 2.6763 8.8865 29 1 2.2000 2.2287 9.9869 30 1 1.8922 4.2883 8.7437 31 1 -0.3633 0.4307 0.9331 32 1 -0.3633 0.5928 -0.8395 33 1 -0.3633 -1.0234 -0.0936 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.8855 1.0251 -1.0300 37 1 3.9719 0.8393 0.7381 38 1 3.4363 3.5500 0.1528 39 1 7.8281 3.8721 0.8662 40 1 7.7400 4.0591 -0.9018 41 1 7.6234 6.3289 1.1354 42 1 9.0284 5.9118 0.1259 43 1 8.9773 8.1939 -0.8898 44 1 7.4837 8.7977 -1.6473 45 1 7.5725 8.6116 0.1205 46 1 5.5274 7.1760 0.0714 47 1 5.4394 7.3626 -1.6964 48 1 5.6450 4.9063 -1.9656 49 1 4.2395 5.3233 -0.9561 50 1 1.7984 3.1042 1.1911 51 1 1.9989 0.4461 2.4505 52 1 3.3253 1.6284 2.3450 53 1 2.8323 1.0719 4.9355 54 1 3.3840 0.7439 8.2109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665880318.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:47 Heat of formation + Delta-G solvation = -132.377550 kcal Electronic energy + Delta-G solvation = -30603.762323 eV Core-core repulsion = 26572.778405 eV Total energy + Delta-G solvation = -4030.983918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42758 -40.32755 -39.20783 -38.40661 -35.97064 -35.09980 -33.66486 -33.35428 -33.00284 -31.70645 -29.84009 -28.31109 -27.42390 -26.04553 -24.46358 -23.58297 -22.86535 -21.76552 -21.14259 -20.70076 -20.47372 -19.86230 -18.49493 -18.14106 -17.15928 -17.04516 -16.68562 -16.37145 -15.97416 -15.84004 -15.50463 -15.23969 -15.17669 -15.11757 -15.00842 -14.65549 -14.35665 -14.11904 -13.96584 -13.77456 -13.50055 -13.47070 -13.18594 -13.11490 -13.07822 -12.87673 -12.65256 -12.43788 -12.43340 -12.23955 -12.13573 -12.03876 -11.92486 -11.79392 -11.62053 -11.54147 -11.48802 -11.28515 -10.94864 -10.71288 -10.35174 -10.16990 -10.02339 -9.37469 -8.46844 -5.95955 1.39193 1.40956 1.52087 1.57385 2.04218 2.11228 2.28613 2.92184 3.20220 3.50368 3.56041 3.66363 3.71685 3.74435 4.00836 4.10615 4.14294 4.19357 4.23137 4.30194 4.37969 4.40823 4.44874 4.47949 4.55262 4.56325 4.61630 4.67787 4.70091 4.82022 4.90506 4.94447 4.98662 4.99073 5.03372 5.10747 5.16391 5.19523 5.23078 5.29825 5.34315 5.38387 5.39983 5.41191 5.42769 5.57961 5.59705 5.86222 6.06669 6.37211 6.43241 6.58525 7.11691 7.16393 7.55302 8.09786 8.70460 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.003060 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.021076 B = 9147.736459 C =11523.219726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.113 0.887 5 C 0.084 3.916 6 N -0.720 5.720 7 C 0.514 3.486 8 O -0.582 6.582 9 C -0.105 4.105 10 H 0.100 0.900 11 C -0.095 4.095 12 C -0.111 4.111 13 C -0.092 4.092 14 H 0.069 0.931 15 C -0.146 4.146 16 C -0.111 4.111 17 C -0.103 4.103 18 N -0.658 5.658 19 C 0.064 3.936 20 C 0.440 3.560 21 O -0.617 6.617 22 N -0.575 5.575 23 C -0.332 4.332 24 H 0.081 0.919 25 C -0.014 4.014 26 N -0.923 5.923 27 Si 0.993 3.007 28 H -0.271 1.271 29 H -0.272 1.272 30 H -0.270 1.270 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.408 0.592 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.345 0.655 51 H 0.100 0.900 52 H 0.054 0.946 53 H 0.393 0.607 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 7.120 -20.184 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.131 0.869 5 C -0.042 4.042 6 N -0.373 5.373 7 C 0.302 3.698 8 O -0.462 6.462 9 C -0.126 4.126 10 H 0.118 0.882 11 C -0.134 4.134 12 C -0.149 4.149 13 C -0.111 4.111 14 H 0.088 0.912 15 C -0.203 4.203 16 C -0.149 4.149 17 C -0.141 4.141 18 N -0.290 5.290 19 C -0.068 4.068 20 C 0.228 3.772 21 O -0.503 6.503 22 N -0.212 5.212 23 C -0.462 4.462 24 H 0.099 0.901 25 C -0.214 4.214 26 N -0.564 5.564 27 Si 0.816 3.184 28 H -0.196 1.196 29 H -0.197 1.197 30 H -0.195 1.195 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.244 0.756 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.164 0.836 51 H 0.118 0.882 52 H 0.072 0.928 53 H 0.227 0.773 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.978 6.601 -20.106 21.990 hybrid contribution 0.840 0.208 1.220 1.496 sum 6.817 6.809 -18.886 21.202 Atomic orbital electron populations 1.21566 0.94901 1.01177 1.01846 1.21538 0.96964 0.94053 1.02637 1.22040 0.89970 0.97502 0.92785 0.86945 1.22129 0.96515 0.83257 1.02274 1.45973 1.07257 1.09933 1.74095 1.21178 0.82035 0.91966 0.74594 1.90671 1.56647 1.47957 1.50941 1.21405 0.97762 0.90950 1.02463 0.88185 1.21282 0.92643 0.97504 1.01928 1.21608 1.00553 0.93539 0.99180 1.21156 0.95418 0.95979 0.98538 0.91221 1.21813 1.01054 0.95390 1.02053 1.21588 0.95017 0.95314 1.02934 1.21494 1.00801 0.95285 0.96489 1.60210 1.60969 1.07596 1.00267 1.21519 0.96709 0.99889 0.88697 1.20799 0.84846 0.86222 0.85352 1.90484 1.38052 1.34527 1.87262 1.41958 1.40243 1.34003 1.05014 1.19641 1.24436 1.17332 0.84776 0.90053 1.26064 0.96398 0.97101 1.01834 1.69677 1.31138 1.28583 1.26982 0.84991 0.78447 0.78324 0.76612 1.19617 1.19683 1.19489 0.94137 0.92007 0.92555 0.89363 0.92676 0.90414 0.92903 0.75569 0.93282 0.92173 0.91858 0.91226 0.92514 0.91966 0.92754 0.91575 0.90229 0.91582 0.90210 0.83554 0.88236 0.92823 0.77346 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.71 71.98 0.70 -2.18 16 2 C -0.11 -2.21 5.28 30.59 0.16 -2.05 16 3 C 0.09 1.74 2.73 44.91 0.12 1.86 16 4 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 5 C 0.08 1.83 4.47 86.38 0.39 2.21 16 6 N -0.72 -15.42 5.21 -463.06 -2.41 -17.84 16 7 C 0.51 13.17 7.15 87.66 0.63 13.80 16 8 O -0.58 -19.65 15.98 -3.05 -0.05 -19.70 16 9 C -0.10 -2.09 2.53 -11.54 -0.03 -2.12 16 10 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 11 C -0.10 -2.00 4.49 30.60 0.14 -1.86 16 12 C -0.11 -1.81 5.20 30.59 0.16 -1.65 16 13 C -0.09 -1.24 2.72 -10.79 -0.03 -1.27 16 14 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 15 C -0.15 -1.68 9.19 71.98 0.66 -1.02 16 16 C -0.11 -1.42 5.20 30.58 0.16 -1.26 16 17 C -0.10 -1.50 5.09 30.58 0.16 -1.35 16 18 N -0.66 -18.30 5.38 -495.58 -2.66 -20.96 16 19 C 0.06 2.17 5.32 85.56 0.46 2.63 16 20 C 0.44 20.65 7.82 87.65 0.69 21.34 16 21 O -0.62 -33.04 15.83 -3.06 -0.05 -33.09 16 22 N -0.58 -29.73 5.29 -306.98 -1.62 -31.35 16 23 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 24 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 25 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 26 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 27 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 31 H 0.04 1.10 7.85 -2.39 -0.02 1.08 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.22 6.36 -2.39 -0.02 1.20 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.39 6.69 -2.39 -0.02 1.38 16 38 H 0.41 7.26 6.65 -92.71 -0.62 6.65 16 39 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 40 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 0.98 7.56 -2.39 -0.02 0.96 16 50 H 0.34 9.55 7.24 -89.69 -0.65 8.90 16 51 H 0.10 3.19 6.30 -2.39 -0.02 3.18 16 52 H 0.05 1.77 6.41 -2.39 -0.02 1.75 16 53 H 0.39 19.74 7.90 -92.71 -0.73 19.01 16 54 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -70.36 420.46 0.05 -70.31 By element: Atomic # 1 Polarization: 50.27 SS G_CDS: -1.10 Total: 49.18 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.63 Total: 8.71 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.42 Total: -120.49 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.10 Total: -52.79 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -70.36 0.05 -70.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665880318.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.064 kcal (2) G-P(sol) polarization free energy of solvation -70.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds