Wall clock time and date at job start Sat Apr 11 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47238 * 2 1 4 4 N 1.46901 * 109.46742 * 120.00146 * 2 1 3 5 5 C 1.47838 * 111.00268 * 48.93185 * 4 2 1 6 6 C 1.54912 * 104.79726 * 146.36080 * 5 4 2 7 7 C 1.55139 * 101.65426 * 322.93193 * 6 5 4 8 8 C 1.47446 * 110.99789 * 169.77661 * 4 2 1 9 9 H 1.08993 * 109.89319 * 117.17375 * 8 4 2 10 10 C 1.50698 * 109.88962 * 356.14289 * 8 4 2 11 11 O 1.21275 * 120.00330 * 299.39440 * 10 8 4 12 12 N 1.34774 * 120.00028 * 119.39095 * 10 8 4 13 13 C 1.46504 * 120.00522 * 180.64489 * 12 10 8 14 14 C 1.52995 * 109.45841 * 63.76427 * 13 12 10 15 15 O 1.42908 * 109.46978 * 64.49346 * 14 13 12 16 16 C 1.53032 * 109.45221 * 183.73630 * 13 12 10 17 17 C 1.53189 * 109.31353 * 58.64643 * 16 13 12 18 18 N 1.46924 * 108.77740 * 54.63427 * 17 16 13 19 19 C 1.36942 * 120.62959 * 126.37038 * 18 17 16 20 20 H 1.08002 * 119.99574 * 213.95540 * 19 18 17 21 21 C 1.38808 * 120.00144 * 33.95005 * 19 18 17 22 22 N 1.31617 * 120.00064 * 8.83261 * 21 19 18 23 23 Si 1.86806 * 119.99866 * 188.82428 * 21 19 18 24 24 H 1.48494 * 109.47041 * 60.00556 * 23 21 19 25 25 H 1.48505 * 109.46888 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47031 * 300.00504 * 23 21 19 27 27 C 1.46927 * 118.74034 * 306.39440 * 18 17 16 28 28 C 1.53044 * 109.45545 * 303.79837 * 13 12 10 29 29 H 1.08994 * 109.46892 * 296.18647 * 1 2 3 30 30 H 1.08998 * 109.46581 * 56.18753 * 1 2 3 31 31 H 1.09000 * 109.47184 * 176.18716 * 1 2 3 32 32 H 1.08997 * 109.47445 * 239.99921 * 2 1 3 33 33 H 1.08997 * 109.46838 * 184.90274 * 3 2 1 34 34 H 1.08997 * 109.47054 * 304.90872 * 3 2 1 35 35 H 1.09007 * 109.46743 * 64.90943 * 3 2 1 36 36 H 1.09000 * 110.37706 * 265.18879 * 5 4 2 37 37 H 1.09000 * 110.37706 * 27.53192 * 5 4 2 38 38 H 1.08997 * 110.98964 * 81.02409 * 6 5 4 39 39 H 1.08995 * 110.99261 * 204.79911 * 6 5 4 40 40 H 1.08998 * 110.70157 * 277.27196 * 7 6 5 41 41 H 1.08995 * 110.70558 * 154.03402 * 7 6 5 42 42 H 0.96999 * 120.00022 * 0.64252 * 12 10 8 43 43 H 1.08999 * 109.47586 * 304.49452 * 14 13 12 44 44 H 1.09000 * 109.47268 * 184.48753 * 14 13 12 45 45 H 0.96700 * 113.99985 * 179.97438 * 15 14 13 46 46 H 1.08999 * 109.49989 * 178.59683 * 16 13 12 47 47 H 1.09004 * 109.49705 * 298.69878 * 16 13 12 48 48 H 1.09004 * 109.58784 * 294.84622 * 17 16 13 49 49 H 1.09006 * 109.58759 * 174.42280 * 17 16 13 50 50 H 0.97000 * 120.00105 * 179.97438 * 22 21 19 51 51 H 1.09002 * 109.58474 * 293.81879 * 27 18 17 52 52 H 1.08998 * 109.58572 * 173.39023 * 27 18 17 53 53 H 1.08997 * 109.49675 * 61.30760 * 28 13 12 54 54 H 1.09001 * 109.49338 * 181.37474 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3413 -1.9946 1.3735 6 6 2.4144 -2.9189 2.0012 7 6 3.7001 -2.4459 1.2732 8 6 3.4730 -0.9275 1.1177 9 1 3.9811 -0.3902 1.9184 10 6 3.9925 -0.4657 -0.2194 11 8 3.5715 -0.9678 -1.2399 12 7 4.9251 0.5053 -0.2812 13 6 5.4199 0.9642 -1.5815 14 6 4.2729 1.6031 -2.3668 15 8 3.8249 2.7768 -1.6856 16 6 6.5296 1.9964 -1.3691 17 6 7.6609 1.3634 -0.5530 18 7 8.1008 0.1348 -1.2279 19 6 9.4204 -0.0551 -1.5410 20 1 9.6906 -0.5931 -2.4376 21 6 10.4106 0.4439 -0.7060 22 7 10.0905 0.9445 0.4684 23 14 12.1975 0.4047 -1.2490 24 1 12.3524 1.1913 -2.4989 25 1 13.0512 0.9919 -0.1851 26 1 12.6096 -1.0007 -1.4943 27 6 7.0980 -0.8861 -1.5611 28 6 5.9730 -0.2278 -2.3660 29 1 -0.3633 0.4535 0.9221 30 1 -0.3632 0.5719 -0.8539 31 1 -0.3633 -1.0254 -0.0683 32 1 1.8934 -0.5138 -0.8899 33 1 3.1265 1.4437 -0.0878 34 1 1.6067 1.9811 -0.8427 35 1 1.7503 1.9303 0.9308 36 1 0.4892 -1.8918 2.0453 37 1 1.0199 -2.3870 0.4087 38 1 2.4912 -2.7542 3.0759 39 1 2.2040 -3.9658 1.7829 40 1 3.7886 -2.9242 0.2977 41 1 4.5824 -2.6433 1.8819 42 1 5.2686 0.9005 0.5354 43 1 3.4492 0.8939 -2.4487 44 1 4.6209 1.8725 -3.3640 45 1 3.0973 3.2348 -2.1281 46 1 6.9155 2.3199 -2.3359 47 1 6.1292 2.8554 -0.8307 48 1 7.2994 1.1218 0.4466 49 1 8.4957 2.0609 -0.4832 50 1 10.7825 1.2929 1.0521 51 1 6.6906 -1.3111 -0.6438 52 1 7.5613 -1.6727 -2.1566 53 1 5.1764 -0.9519 -2.5371 54 1 6.3636 0.1166 -3.3236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674310674.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:35 Heat of formation + Delta-G solvation = -59.185599 kcal Electronic energy + Delta-G solvation = -33688.444657 eV Core-core repulsion = 29660.634580 eV Total energy + Delta-G solvation = -4027.810077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36672 -40.22623 -38.17496 -37.44638 -35.62197 -35.29055 -33.80474 -32.21508 -31.64993 -30.34222 -30.00953 -28.35403 -27.69832 -25.63652 -24.31452 -23.89519 -22.65276 -22.26666 -21.73404 -20.62610 -20.21870 -18.77492 -18.22371 -17.93754 -17.61938 -16.87044 -16.78643 -16.24599 -16.16522 -15.83215 -15.44454 -15.24914 -14.94384 -14.81693 -14.63883 -14.33565 -14.19877 -14.14563 -13.65772 -13.33879 -13.29776 -13.19767 -12.96563 -12.93212 -12.89055 -12.69474 -12.67479 -12.55270 -12.28285 -12.12363 -12.02130 -12.01305 -11.87448 -11.79087 -11.70201 -11.67913 -11.35797 -11.28796 -10.92819 -10.54972 -10.48593 -9.81971 -9.08348 -8.56523 -7.86545 -5.39597 1.47305 1.48252 1.55116 1.58742 2.23654 2.50522 2.99476 3.26843 3.32099 3.52109 3.69517 3.72358 3.77406 4.00984 4.03472 4.18077 4.21744 4.24433 4.28477 4.38278 4.45807 4.54125 4.55311 4.61231 4.66979 4.69447 4.74665 4.77366 4.85761 4.89063 4.92992 4.95749 5.00786 5.03070 5.06177 5.08997 5.14333 5.16338 5.22962 5.28117 5.29183 5.39761 5.47641 5.55915 5.64334 5.68173 5.75931 5.96180 6.12035 6.43021 6.63191 6.92783 7.18002 7.27188 7.85336 8.40191 9.18450 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.003738 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.720042 B = 7489.057937 C = 8404.972559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.027 3.973 3 C -0.154 4.154 4 N -0.500 5.500 5 C 0.040 3.960 6 C -0.118 4.118 7 C -0.129 4.129 8 C 0.051 3.949 9 H 0.100 0.900 10 C 0.519 3.481 11 O -0.561 6.561 12 N -0.697 5.697 13 C 0.196 3.804 14 C 0.080 3.920 15 O -0.567 6.567 16 C -0.124 4.124 17 C 0.185 3.815 18 N -0.605 5.605 19 C -0.270 4.270 20 H 0.058 0.942 21 C -0.039 4.039 22 N -0.929 5.929 23 Si 0.966 3.034 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.157 3.843 28 C -0.133 4.133 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.083 0.917 42 H 0.402 0.598 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.388 0.612 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.006 0.994 49 H 0.051 0.949 50 H 0.251 0.749 51 H 0.008 0.992 52 H 0.042 0.958 53 H 0.081 0.919 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.771 -1.098 0.399 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 C -0.212 4.212 4 N -0.226 5.226 5 C -0.088 4.088 6 C -0.156 4.156 7 C -0.168 4.168 8 C -0.060 4.060 9 H 0.118 0.882 10 C 0.307 3.693 11 O -0.441 6.441 12 N -0.347 5.347 13 C 0.110 3.890 14 C 0.001 3.999 15 O -0.374 6.374 16 C -0.163 4.163 17 C 0.059 3.941 18 N -0.328 5.328 19 C -0.401 4.401 20 H 0.076 0.924 21 C -0.235 4.235 22 N -0.574 5.574 23 Si 0.794 3.206 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.032 3.968 28 C -0.173 4.173 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.238 0.762 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.237 0.763 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.024 0.976 49 H 0.069 0.931 50 H 0.060 0.940 51 H 0.026 0.974 52 H 0.061 0.939 53 H 0.099 0.901 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.584 -1.219 0.623 19.632 hybrid contribution 1.273 -0.077 -0.878 1.549 sum -18.311 -1.297 -0.255 18.358 Atomic orbital electron populations 1.21831 0.93483 1.01872 1.02244 1.22605 0.96572 0.96049 0.92831 1.22232 1.03688 0.94172 1.01063 1.64246 1.00483 1.20475 1.37364 1.23163 0.97909 0.87770 0.99908 1.22696 0.92459 0.99817 1.00588 1.22729 1.00406 0.92235 1.01429 1.22632 0.91383 0.98074 0.93935 0.88231 1.20933 0.78300 0.78270 0.91778 1.90468 1.58619 1.57742 1.37299 1.46171 1.40793 1.38463 1.09272 1.20152 0.92262 0.93291 0.83301 1.22363 0.96153 0.87223 0.94176 1.86489 1.56894 1.40844 1.53162 1.22168 0.95307 0.97333 1.01487 1.20517 0.94062 0.87800 0.91705 1.44169 1.03101 1.15842 1.69724 1.19389 0.83204 1.34292 1.03202 0.92433 1.25889 1.01716 1.00988 0.94927 1.70092 1.32973 1.45091 1.09261 0.85387 0.80262 0.77891 0.77104 1.20384 1.21784 1.20418 1.20786 0.89475 0.91017 0.95549 1.22226 0.98459 0.98050 0.98524 0.92029 0.91858 0.92516 0.91212 0.90167 0.92257 0.93246 0.88547 0.93853 0.89398 0.89206 0.92055 0.89852 0.76244 0.92786 0.92861 0.76268 0.92049 0.90513 0.97632 0.93079 0.94009 0.97440 0.93900 0.90088 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.76 71.98 0.63 -2.00 16 2 C 0.03 0.65 2.09 44.92 0.09 0.75 16 3 C -0.15 -3.66 7.62 71.98 0.55 -3.11 16 4 N -0.50 -11.71 5.03 -839.85 -4.22 -15.93 16 5 C 0.04 0.78 5.37 86.78 0.47 1.24 16 6 C -0.12 -2.11 7.08 31.98 0.23 -1.89 16 7 C -0.13 -3.06 6.43 31.78 0.20 -2.86 16 8 C 0.05 1.31 3.62 44.51 0.16 1.47 16 9 H 0.10 2.51 7.94 -2.39 -0.02 2.49 16 10 C 0.52 15.43 3.13 87.66 0.27 15.70 16 11 O -0.56 -18.63 9.98 -3.01 -0.03 -18.66 16 12 N -0.70 -21.44 2.63 -422.82 -1.11 -22.55 16 13 C 0.20 6.34 0.45 3.63 0.00 6.34 16 14 C 0.08 2.15 5.23 71.98 0.38 2.52 16 15 O -0.57 -13.28 9.88 -148.98 -1.47 -14.75 16 16 C -0.12 -4.52 4.77 30.67 0.15 -4.37 16 17 C 0.18 8.55 4.96 86.36 0.43 8.98 16 18 N -0.60 -30.07 2.97 -699.09 -2.08 -32.15 16 19 C -0.27 -14.89 9.56 84.03 0.80 -14.09 16 20 H 0.06 3.14 7.84 -2.91 -0.02 3.12 16 21 C -0.04 -2.15 5.07 84.86 0.43 -1.71 16 22 N -0.93 -53.64 11.14 21.65 0.24 -53.40 16 23 Si 0.97 44.54 29.56 68.60 2.03 46.57 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 C 0.16 6.81 6.26 86.36 0.54 7.35 16 28 C -0.13 -4.80 4.60 30.67 0.14 -4.66 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.02 6.62 -2.39 -0.02 1.01 16 32 H 0.07 2.06 4.79 -7.28 -0.03 2.03 16 33 H 0.08 2.11 2.44 -2.39 -0.01 2.10 16 34 H 0.06 1.27 7.63 -2.39 -0.02 1.25 16 35 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 0.91 7.00 -2.39 -0.02 0.89 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.68 7.49 -2.39 -0.02 1.66 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.40 12.54 7.24 -92.71 -0.67 11.87 16 43 H 0.05 1.54 6.29 -2.39 -0.02 1.53 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.39 5.81 8.99 -74.06 -0.67 5.14 16 46 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.08 2.63 7.53 -2.38 -0.02 2.61 16 48 H 0.01 0.27 7.01 -2.39 -0.02 0.25 16 49 H 0.05 2.72 6.25 -2.38 -0.01 2.71 16 50 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.01 0.34 7.60 -2.39 -0.02 0.32 16 52 H 0.04 1.88 7.93 -2.39 -0.02 1.86 16 53 H 0.08 2.93 5.92 -2.39 -0.01 2.91 16 54 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -63.43 383.76 -1.62 -65.05 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.45 Total: 36.15 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 5.47 Total: 9.68 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -7.17 Total: -124.03 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.50 Total: -33.41 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.43 -1.62 -65.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674310674.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.868 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds