Wall clock time and date at job start Sat Apr 11 2020 05:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47061 * 2 1 4 4 N 1.46905 * 109.46993 * 120.00003 * 2 1 3 5 5 C 1.46850 * 110.99718 * 180.02562 * 4 2 1 6 6 C 1.53038 * 109.52127 * 185.83753 * 5 4 2 7 7 C 1.53114 * 109.27867 * 300.81986 * 6 5 4 8 8 C 1.50701 * 109.52253 * 177.56023 * 7 6 5 9 9 O 1.21284 * 120.00032 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00249 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00212 * 175.31702 * 10 8 7 12 12 C 1.53002 * 112.94386 * 294.70159 * 11 10 8 13 13 C 1.52996 * 109.46913 * 303.89205 * 12 11 10 14 14 O 1.42903 * 109.46880 * 176.52393 * 13 12 11 15 15 C 1.53945 * 113.74079 * 163.10936 * 11 10 8 16 16 N 1.47812 * 86.03766 * 222.08502 * 15 11 10 17 17 C 1.36936 * 134.45890 * 204.64884 * 16 15 11 18 18 H 1.08001 * 119.99968 * 183.04471 * 17 16 15 19 19 C 1.38812 * 119.99918 * 3.04024 * 17 16 15 20 20 N 1.31623 * 119.99999 * 6.66102 * 19 17 16 21 21 Si 1.86799 * 119.99996 * 186.66755 * 19 17 16 22 22 H 1.48495 * 109.47313 * 94.94571 * 21 19 17 23 23 H 1.48503 * 109.46984 * 214.94749 * 21 19 17 24 24 H 1.48503 * 109.46897 * 334.94263 * 21 19 17 25 25 C 1.47586 * 91.04787 * 24.54921 * 16 15 11 26 26 C 1.53121 * 109.16187 * 57.65516 * 7 6 5 27 27 C 1.46845 * 111.00029 * 304.20572 * 4 2 1 28 28 H 1.09005 * 109.47235 * 300.00145 * 1 2 3 29 29 H 1.09000 * 109.47087 * 59.99662 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46758 * 239.99988 * 2 1 3 32 32 H 1.09003 * 109.46910 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46724 * 300.00170 * 3 2 1 34 34 H 1.08998 * 109.46931 * 60.00044 * 3 2 1 35 35 H 1.08994 * 109.46428 * 65.81966 * 5 4 2 36 36 H 1.09002 * 109.45006 * 305.84514 * 5 4 2 37 37 H 1.09000 * 109.50390 * 180.87209 * 6 5 4 38 38 H 1.09005 * 109.50156 * 60.76235 * 6 5 4 39 39 H 1.09000 * 109.52303 * 297.68500 * 7 6 5 40 40 H 0.97004 * 119.99901 * 355.03645 * 10 8 7 41 41 H 1.09003 * 109.46722 * 63.88752 * 12 11 10 42 42 H 1.08996 * 109.46893 * 183.89166 * 12 11 10 43 43 H 1.09002 * 109.47344 * 296.52376 * 13 12 11 44 44 H 1.08996 * 109.47548 * 56.52533 * 13 12 11 45 45 H 0.96703 * 113.99684 * 179.97438 * 14 13 12 46 46 H 1.09004 * 113.77172 * 336.34672 * 15 11 10 47 47 H 1.08999 * 113.77070 * 107.74399 * 15 11 10 48 48 H 0.97000 * 119.99844 * 180.02562 * 20 19 17 49 49 H 1.09004 * 113.76930 * 221.15426 * 25 16 15 50 50 H 1.08998 * 113.87041 * 89.77000 * 25 16 15 51 51 H 1.08993 * 109.50477 * 62.28677 * 26 7 6 52 52 H 1.08997 * 109.50028 * 182.40713 * 26 7 6 53 53 H 1.08999 * 109.46635 * 294.18011 * 27 4 2 54 54 H 1.09001 * 109.46219 * 54.14607 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4876 -0.7116 1.2337 6 6 3.9607 -1.5626 2.4143 7 6 3.4088 -0.9735 3.7154 8 6 3.8216 -1.8414 4.8762 9 8 4.4910 -2.8342 4.6831 10 7 3.4461 -1.5150 6.1287 11 6 3.7590 -2.4114 7.2444 12 6 3.0353 -3.7561 7.1501 13 6 1.5271 -3.5178 7.0530 14 8 0.8572 -4.7687 6.8836 15 6 3.6474 -1.7430 8.6267 16 7 4.8953 -2.4612 8.9610 17 6 5.4740 -2.8869 10.1268 18 1 6.4435 -3.3622 10.1063 19 6 4.8144 -2.7073 11.3350 20 7 3.5806 -2.2491 11.3495 21 14 5.6781 -3.1158 12.9402 22 1 6.2940 -1.8851 13.4980 23 1 4.6918 -3.6584 13.9088 24 1 6.7348 -4.1286 12.6899 25 6 5.2656 -2.5374 7.5344 26 6 1.8807 -0.9200 3.6345 27 6 1.4685 -0.0872 2.4185 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.8615 0.3060 1.3466 36 1 3.8669 -1.1368 0.3044 37 1 5.0501 -1.5639 2.4487 38 1 3.5986 -2.5839 2.2949 39 1 3.8026 0.0333 3.8552 40 1 2.9722 -0.6845 6.2921 41 1 3.3765 -4.2910 6.2637 42 1 3.2530 -4.3490 8.0385 43 1 1.1755 -3.0381 7.9664 44 1 1.3152 -2.8738 6.1996 45 1 -0.1044 -4.6937 6.8149 46 1 3.7579 -0.6589 8.6007 47 1 2.7827 -2.0699 9.2042 48 1 3.1199 -2.1233 12.1938 49 1 5.6906 -3.4975 7.2415 50 1 5.8528 -1.6881 7.1852 51 1 1.4859 -1.9310 3.5343 52 1 1.4842 -0.4619 4.5406 53 1 1.8522 0.9274 2.5258 54 1 0.3810 -0.0586 2.3501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675105535.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:43 Heat of formation + Delta-G solvation = -60.351209 kcal Electronic energy + Delta-G solvation = -31534.857448 eV Core-core repulsion = 27506.996826 eV Total energy + Delta-G solvation = -4027.860621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67771 -40.44228 -39.15243 -37.69546 -35.85741 -35.26392 -33.77146 -32.15023 -31.70067 -31.11945 -29.01169 -28.05738 -26.85117 -26.32697 -24.85551 -24.02780 -23.34786 -22.34649 -21.01719 -20.18883 -20.01334 -18.78982 -18.50573 -18.10530 -17.09879 -17.01202 -16.68202 -16.28303 -16.02703 -15.82031 -15.60394 -15.42609 -15.18252 -15.11561 -14.83530 -14.50408 -14.39437 -14.15437 -13.69303 -13.56608 -13.31920 -13.30238 -13.08169 -12.93328 -12.82492 -12.78334 -12.67336 -12.54715 -12.31713 -12.25899 -12.13953 -12.03548 -11.90061 -11.73716 -11.63039 -11.50064 -11.37162 -11.18625 -10.96315 -10.86572 -10.46715 -10.01059 -9.10855 -8.95389 -7.92912 -5.27007 1.45502 1.46521 1.55654 1.75145 2.17539 2.49452 2.99804 3.15770 3.24616 3.37785 3.62756 3.67597 3.82482 3.90245 4.04367 4.13623 4.19947 4.27686 4.33168 4.34631 4.36523 4.43783 4.45723 4.49451 4.57567 4.69883 4.70549 4.72369 4.77358 4.82546 4.84665 4.87545 4.93347 4.97611 5.03419 5.07478 5.10607 5.13188 5.17713 5.22868 5.25298 5.26684 5.36550 5.40699 5.47888 5.48569 5.74785 5.90877 6.25157 6.28995 6.69757 6.89537 6.92401 7.40245 7.56040 8.49584 9.22396 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.002516 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.603781 B =11128.072139 C =11570.374524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.183 4.183 4 N -0.545 5.545 5 C 0.062 3.938 6 C -0.092 4.092 7 C -0.097 4.097 8 C 0.516 3.484 9 O -0.575 6.575 10 N -0.705 5.705 11 C 0.158 3.842 12 C -0.087 4.087 13 C 0.094 3.906 14 O -0.593 6.593 15 C 0.165 3.835 16 N -0.632 5.632 17 C -0.238 4.238 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.943 5.943 21 Si 0.977 3.023 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.273 1.273 25 C 0.126 3.874 26 C -0.102 4.102 27 C 0.054 3.946 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.112 0.888 40 H 0.413 0.587 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.396 0.604 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.251 0.749 49 H 0.034 0.966 50 H 0.042 0.958 51 H 0.059 0.941 52 H 0.090 0.910 53 H 0.047 0.953 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 10.053 -23.175 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.242 4.242 4 N -0.270 5.270 5 C -0.065 4.065 6 C -0.130 4.130 7 C -0.119 4.119 8 C 0.304 3.696 9 O -0.454 6.454 10 N -0.358 5.358 11 C 0.070 3.930 12 C -0.126 4.126 13 C 0.016 3.984 14 O -0.402 6.402 15 C 0.040 3.960 16 N -0.359 5.359 17 C -0.366 4.366 18 H 0.094 0.906 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.805 3.195 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.198 1.198 25 C 0.000 4.000 26 C -0.140 4.140 27 C -0.073 4.073 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.251 0.749 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.246 0.754 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.052 0.948 50 H 0.060 0.940 51 H 0.078 0.922 52 H 0.109 0.891 53 H 0.065 0.935 54 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.769 8.562 -22.972 26.037 hybrid contribution 0.389 0.977 1.352 1.713 sum -8.380 9.539 -21.620 25.072 Atomic orbital electron populations 1.21894 0.93708 1.02182 1.02427 1.21739 0.96191 0.92624 0.92782 1.22445 1.01378 0.97613 1.02768 1.62182 1.07845 1.54372 1.02610 1.22033 0.87686 0.98578 0.98239 1.21322 0.99953 0.99423 0.92335 1.21394 0.98698 0.99705 0.92067 1.21239 0.78322 0.85712 0.84350 1.90685 1.39604 1.29697 1.85393 1.45984 1.59621 1.24250 1.05907 1.22134 0.94376 0.90486 0.85995 1.21148 0.94702 0.95539 1.01187 1.21944 0.91194 0.85279 0.99947 1.86442 1.25454 1.31688 1.96573 1.22570 0.90880 0.94017 0.88570 1.45957 1.23624 1.65340 1.00985 1.19283 1.00801 1.32536 0.83981 0.90567 1.25533 0.97133 1.02064 1.00416 1.69945 1.11403 1.52257 1.25470 0.85087 0.77440 0.77661 0.79292 1.21226 1.21720 1.19794 1.22858 0.94993 0.98263 0.83905 1.21581 0.91738 1.01493 0.99207 1.22166 1.00884 0.95759 0.88514 0.92046 0.91232 0.92636 0.90204 0.92697 0.91319 0.92352 0.93543 0.90325 0.91815 0.92691 0.86978 0.74947 0.92348 0.93346 0.93524 0.91761 0.75400 0.94643 0.91644 0.93958 0.94772 0.94039 0.92181 0.89119 0.93489 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.84 71.98 0.64 -0.83 16 2 C 0.07 0.88 3.03 44.92 0.14 1.01 16 3 C -0.18 -1.81 8.51 71.98 0.61 -1.20 16 4 N -0.55 -8.17 4.68 -871.09 -4.08 -12.25 16 5 C 0.06 0.98 4.89 86.33 0.42 1.40 16 6 C -0.09 -1.93 4.68 30.64 0.14 -1.79 16 7 C -0.10 -1.91 2.59 -11.46 -0.03 -1.94 16 8 C 0.52 14.80 6.82 87.66 0.60 15.39 16 9 O -0.58 -21.86 14.37 -3.04 -0.04 -21.90 16 10 N -0.70 -19.86 4.38 -427.55 -1.87 -21.73 16 11 C 0.16 6.03 0.67 5.36 0.00 6.04 16 12 C -0.09 -3.49 4.82 30.59 0.15 -3.34 16 13 C 0.09 3.01 6.84 71.98 0.49 3.50 16 14 O -0.59 -18.67 13.66 -148.98 -2.04 -20.70 16 15 C 0.17 7.45 6.88 86.44 0.60 8.05 16 16 N -0.63 -33.20 3.54 -715.47 -2.53 -35.73 16 17 C -0.24 -13.68 10.69 84.03 0.90 -12.78 16 18 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 19 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 20 N -0.94 -55.18 11.32 21.65 0.25 -54.93 16 21 Si 0.98 46.01 29.56 68.60 2.03 48.04 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 C 0.13 5.70 7.53 86.48 0.65 6.35 16 26 C -0.10 -1.61 5.27 30.65 0.16 -1.45 16 27 C 0.05 0.71 4.67 86.33 0.40 1.11 16 28 H 0.06 0.58 6.22 -2.38 -0.01 0.56 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.58 6.53 -2.39 -0.02 0.57 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.58 6.63 -2.39 -0.02 0.57 16 35 H 0.05 0.64 6.63 -2.39 -0.02 0.63 16 36 H 0.08 1.19 8.12 -2.39 -0.02 1.17 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.43 8.04 -2.38 -0.02 1.41 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.41 8.83 8.35 -92.71 -0.77 8.06 16 41 H 0.06 2.50 7.10 -2.39 -0.02 2.48 16 42 H 0.05 2.33 8.02 -2.39 -0.02 2.31 16 43 H 0.05 1.53 7.56 -2.39 -0.02 1.51 16 44 H 0.06 1.70 7.57 -2.39 -0.02 1.69 16 45 H 0.40 7.79 9.12 -74.06 -0.68 7.11 16 46 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.07 3.28 6.30 -2.39 -0.02 3.26 16 48 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 49 H 0.03 1.64 8.10 -2.38 -0.02 1.62 16 50 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.09 1.10 7.79 -2.39 -0.02 1.08 16 53 H 0.05 0.54 6.71 -2.39 -0.02 0.52 16 54 H 0.09 1.05 5.90 -2.39 -0.01 1.03 16 Total: -1.00 -73.40 409.18 -2.51 -75.92 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.55 Total: 26.57 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 6.34 Total: 16.74 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -8.24 Total: -124.65 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.08 Total: -42.61 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.40 -2.51 -75.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675105535.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.564 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds