Wall clock time and date at job start Sat Apr 11 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 N 1.46497 * 109.47058 * 120.00057 * 2 1 3 5 5 C 1.34417 * 124.35094 * 300.02103 * 4 2 1 6 6 O 1.21283 * 124.94355 * 0.43141 * 5 4 2 7 7 C 1.51286 * 110.11517 * 180.16242 * 5 4 2 8 8 C 1.54623 * 104.19583 * 16.49747 * 7 5 4 9 9 C 1.46762 * 124.34850 * 120.19340 * 4 2 1 10 10 H 1.09003 * 110.46195 * 44.06340 * 9 4 2 11 11 C 1.50694 * 110.04179 * 282.14567 * 9 4 2 12 12 O 1.21280 * 120.00149 * 2.54020 * 11 9 4 13 13 N 1.34782 * 119.99849 * 182.54451 * 11 9 4 14 14 C 1.46501 * 119.99644 * 179.97438 * 13 11 9 15 15 H 1.08997 * 109.47439 * 35.00435 * 14 13 11 16 16 C 1.53009 * 109.46737 * 155.00070 * 14 13 11 17 17 N 1.46491 * 109.46967 * 304.99886 * 16 14 13 18 18 C 1.36934 * 119.99760 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00646 * 359.97438 * 18 17 16 20 20 C 1.38823 * 120.00106 * 180.02562 * 18 17 16 21 21 N 1.31610 * 119.99593 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47319 * 59.99991 * 22 20 18 24 24 H 1.48500 * 109.46866 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47013 * 299.99608 * 22 20 18 26 26 C 1.52999 * 109.47221 * 274.99621 * 14 13 11 27 27 C 1.52999 * 109.46955 * 60.00538 * 26 14 13 28 28 C 1.53003 * 109.47352 * 180.02562 * 26 14 13 29 29 C 1.52997 * 109.47542 * 300.00210 * 26 14 13 30 30 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47122 * 300.00105 * 1 2 3 32 32 H 1.09001 * 109.46967 * 59.99598 * 1 2 3 33 33 H 1.09004 * 109.47122 * 239.99895 * 2 1 3 34 34 H 1.08997 * 109.47185 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47427 * 300.00120 * 3 2 1 36 36 H 1.08997 * 109.46935 * 60.00202 * 3 2 1 37 37 H 1.09000 * 110.48290 * 135.17506 * 7 5 4 38 38 H 1.09003 * 110.48423 * 257.68608 * 7 5 4 39 39 H 1.09006 * 110.96977 * 93.32110 * 8 7 5 40 40 H 1.09002 * 110.97110 * 217.07976 * 8 7 5 41 41 H 0.96996 * 120.00404 * 359.97438 * 13 11 9 42 42 H 1.08998 * 109.46951 * 65.00308 * 16 14 13 43 43 H 1.09003 * 109.46456 * 184.99731 * 16 14 13 44 44 H 0.96999 * 120.00454 * 359.97438 * 17 16 14 45 45 H 0.97006 * 119.99884 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.47295 * 59.99661 * 27 26 14 47 47 H 1.09000 * 109.47134 * 179.97438 * 27 26 14 48 48 H 1.09003 * 109.47096 * 299.99719 * 27 26 14 49 49 H 1.09004 * 109.46925 * 60.00347 * 28 26 14 50 50 H 1.09000 * 109.47457 * 180.02562 * 28 26 14 51 51 H 1.08997 * 109.47343 * 300.00836 * 28 26 14 52 52 H 1.09003 * 109.46887 * 60.00050 * 29 26 14 53 53 H 1.08994 * 109.47601 * 179.97438 * 29 26 14 54 54 H 1.08995 * 109.47328 * 300.00476 * 29 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7476 -0.3086 2.4561 6 8 1.0635 0.6453 2.7610 7 6 2.4152 -1.2455 3.4386 8 6 3.4698 -1.9945 2.5916 9 6 2.8688 -1.8864 1.1727 10 1 3.6628 -1.7748 0.4342 11 6 2.0380 -3.1051 0.8639 12 8 0.8530 -2.9888 0.6336 13 7 2.6119 -4.3245 0.8438 14 6 1.8041 -5.5093 0.5441 15 1 1.0397 -5.2520 -0.1890 16 6 2.7036 -6.6100 -0.0219 17 7 3.4362 -6.0941 -1.1809 18 6 4.3080 -6.9056 -1.8565 19 1 4.4559 -7.9259 -1.5348 20 6 5.0026 -6.4166 -2.9545 21 7 4.8228 -5.1731 -3.3463 22 14 6.1913 -7.5239 -3.8765 23 1 5.4593 -8.7005 -4.4102 24 1 6.8013 -6.7685 -5.0001 25 1 7.2590 -7.9827 -2.9519 26 6 1.1341 -6.0074 1.8263 27 6 0.2346 -4.9068 2.3923 28 6 0.2909 -7.2452 1.5135 29 6 2.2071 -6.3687 2.8553 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.8976 -0.6809 4.2365 38 1 1.6888 -1.9448 3.8527 39 1 4.4380 -1.4963 2.6443 40 1 3.5515 -3.0361 2.9024 41 1 3.5597 -4.4176 1.0277 42 1 3.4117 -6.9296 0.7427 43 1 2.0912 -7.4584 -0.3274 44 1 3.3031 -5.1778 -1.4702 45 1 5.3084 -4.8312 -4.1133 46 1 -0.5299 -4.6494 1.6592 47 1 -0.2431 -5.2618 3.3055 48 1 0.8356 -4.0252 2.6153 49 1 0.9321 -8.0292 1.1104 50 1 -0.1868 -7.5998 2.4268 51 1 -0.4735 -6.9883 0.7802 52 1 2.8081 -5.4871 3.0783 53 1 1.7298 -6.7231 3.7689 54 1 2.8479 -7.1527 2.4521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677276414.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:49 Heat of formation + Delta-G solvation = -86.744302 kcal Electronic energy + Delta-G solvation = -32649.191695 eV Core-core repulsion = 28620.186583 eV Total energy + Delta-G solvation = -4029.005112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.17716 -40.72315 -38.65672 -37.16938 -36.15641 -36.03332 -34.48747 -32.92904 -31.01662 -29.82418 -28.83839 -28.13054 -28.09434 -27.57587 -25.60373 -23.99862 -23.35456 -22.99746 -21.51679 -19.94811 -19.73481 -19.15755 -18.37629 -17.82052 -17.19788 -16.80061 -16.56976 -16.27436 -16.11228 -15.44373 -15.34720 -15.15940 -14.91182 -14.81787 -14.70201 -14.63123 -14.30596 -14.14815 -13.98632 -13.83481 -13.54576 -13.05764 -13.02979 -12.99056 -12.91438 -12.79026 -12.69557 -12.56205 -12.49317 -12.32894 -12.31936 -12.18047 -12.10050 -12.08060 -11.97974 -11.71596 -11.57309 -11.25383 -10.95452 -10.83506 -10.64002 -9.82342 -9.69396 -8.94094 -7.90676 -5.18579 1.51325 1.51511 1.52946 1.58652 1.69499 1.85512 2.40851 2.59339 3.28960 3.44061 3.48386 3.68184 3.74824 3.88953 3.92066 3.99856 4.08775 4.13351 4.20096 4.28757 4.30106 4.39864 4.49164 4.50218 4.67718 4.68969 4.71665 4.76189 4.84251 4.85181 4.88256 4.90685 4.93838 4.95706 4.99982 5.04980 5.11043 5.12812 5.17097 5.22700 5.28235 5.30863 5.36654 5.49353 5.55408 5.60286 5.61027 5.71651 6.13506 6.30543 6.68453 7.15179 7.37574 7.38653 8.12902 8.36569 9.31983 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010441 B = 0.003927 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.056383 B = 7129.089758 C = 8734.426229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 C -0.155 4.155 4 N -0.588 5.588 5 C 0.512 3.488 6 O -0.571 6.571 7 C -0.150 4.150 8 C -0.108 4.108 9 C 0.107 3.893 10 H 0.126 0.874 11 C 0.501 3.499 12 O -0.558 6.558 13 N -0.698 5.698 14 C 0.163 3.837 15 H 0.050 0.950 16 C 0.145 3.855 17 N -0.740 5.740 18 C -0.241 4.241 19 H 0.076 0.924 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.275 1.275 26 C -0.068 4.068 27 C -0.118 4.118 28 C -0.141 4.141 29 C -0.137 4.137 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.410 0.590 42 H 0.048 0.952 43 H 0.030 0.970 44 H 0.374 0.626 45 H 0.249 0.751 46 H 0.032 0.968 47 H 0.058 0.942 48 H 0.047 0.953 49 H 0.060 0.940 50 H 0.072 0.928 51 H 0.042 0.958 52 H 0.062 0.938 53 H 0.066 0.934 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 4.781 15.540 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 C -0.213 4.213 4 N -0.320 5.320 5 C 0.302 3.698 6 O -0.451 6.451 7 C -0.190 4.190 8 C -0.146 4.146 9 C -0.001 4.001 10 H 0.144 0.856 11 C 0.286 3.714 12 O -0.436 6.436 13 N -0.350 5.350 14 C 0.057 3.943 15 H 0.068 0.932 16 C 0.018 3.982 17 N -0.383 5.383 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.261 4.261 21 N -0.616 5.616 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.226 1.226 25 H -0.201 1.201 26 C -0.070 4.070 27 C -0.175 4.175 28 C -0.198 4.198 29 C -0.194 4.194 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.246 0.754 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.061 0.939 52 H 0.081 0.919 53 H 0.085 0.915 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.573 5.236 15.416 16.668 hybrid contribution 0.566 -0.247 -1.386 1.518 sum -3.007 4.990 14.029 15.191 Atomic orbital electron populations 1.22048 0.95321 1.01969 1.02056 1.20969 0.94354 0.93356 0.86488 1.22086 1.01582 0.94700 1.02921 1.48180 1.50676 1.26747 1.06395 1.21458 0.79429 0.84505 0.84450 1.90650 1.41181 1.31252 1.82038 1.22404 0.99578 0.98720 0.98254 1.22728 0.99353 1.04095 0.88441 1.21835 0.92351 0.82846 1.03062 0.85603 1.21178 0.88406 0.85145 0.76628 1.90692 1.17007 1.86338 1.49609 1.45813 1.13230 1.05445 1.70465 1.20995 0.92630 0.84710 0.95935 0.93207 1.21214 0.93381 0.94448 0.89114 1.42493 1.49742 1.13166 1.32946 1.19550 1.15266 0.94947 1.07498 0.90560 1.25433 1.02847 0.97629 1.00223 1.69793 1.46996 1.15907 1.28951 0.85321 0.79225 0.77832 0.78007 1.21039 1.22645 1.20084 1.20832 0.96042 0.95729 0.94408 1.21751 0.98624 0.97416 0.99708 1.21890 0.99364 0.96750 1.01834 1.21876 0.97748 1.01842 0.97904 0.93150 0.93316 0.90628 0.89780 0.91636 0.90044 0.92902 0.85665 0.87702 0.85978 0.86955 0.75363 0.93455 0.95188 0.79362 0.94209 0.94882 0.92346 0.93367 0.92100 0.90932 0.93931 0.91892 0.91523 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 9.18 71.98 0.66 -3.83 16 2 C 0.15 3.96 3.25 44.99 0.15 4.11 16 3 C -0.15 -3.52 9.20 71.98 0.66 -2.86 16 4 N -0.59 -14.86 2.03 -774.53 -1.57 -16.43 16 5 C 0.51 13.57 7.41 87.90 0.65 14.22 16 6 O -0.57 -19.28 15.12 -3.04 -0.05 -19.32 16 7 C -0.15 -2.53 6.85 30.59 0.21 -2.32 16 8 C -0.11 -1.44 6.65 31.65 0.21 -1.23 16 9 C 0.11 2.28 3.46 44.70 0.15 2.44 16 10 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 11 C 0.50 13.69 5.52 87.65 0.48 14.17 16 12 O -0.56 -19.19 12.05 -3.03 -0.04 -19.23 16 13 N -0.70 -18.25 3.34 -442.52 -1.48 -19.73 16 14 C 0.16 4.85 1.69 44.99 0.08 4.92 16 15 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 16 C 0.14 5.02 5.10 86.38 0.44 5.46 16 17 N -0.74 -33.95 5.43 -343.45 -1.87 -35.81 16 18 C -0.24 -12.42 9.99 84.04 0.84 -11.58 16 19 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 20 C -0.07 -3.71 5.50 84.87 0.47 -3.25 16 21 N -0.97 -56.00 13.06 21.65 0.28 -55.71 16 22 Si 0.97 43.86 29.55 68.60 2.03 45.89 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C -0.07 -1.61 0.62 -52.18 -0.03 -1.64 16 27 C -0.12 -2.92 7.00 71.98 0.50 -2.42 16 28 C -0.14 -3.19 8.12 71.98 0.58 -2.60 16 29 C -0.14 -2.55 7.97 71.98 0.57 -1.98 16 30 H 0.05 1.68 6.75 -2.39 -0.02 1.67 16 31 H 0.05 1.54 6.77 -2.38 -0.02 1.53 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.25 8.07 -2.38 -0.02 2.23 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.39 6.80 -2.39 -0.02 1.38 16 37 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.11 1.17 7.47 -2.39 -0.02 1.15 16 41 H 0.41 9.65 8.39 -92.71 -0.78 8.87 16 42 H 0.05 1.51 6.17 -2.39 -0.01 1.50 16 43 H 0.03 1.09 6.71 -2.39 -0.02 1.07 16 44 H 0.37 18.66 7.33 -92.71 -0.68 17.98 16 45 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 46 H 0.03 0.99 7.53 -2.39 -0.02 0.98 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.05 1.22 5.78 -2.39 -0.01 1.20 16 49 H 0.06 1.40 6.54 -2.38 -0.02 1.38 16 50 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.06 1.05 7.60 -2.39 -0.02 1.03 16 53 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 54 H 0.06 1.17 6.32 -2.39 -0.02 1.16 16 Total: -1.00 -70.11 410.93 3.38 -66.72 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -0.56 Total: 42.02 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 6.63 Total: 11.61 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -4.63 Total: -127.69 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.08 Total: -38.55 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.11 3.38 -66.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677276414.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.022 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds