Wall clock time and date at job start Sat Apr 11 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46944 * 2 1 4 4 N 1.46503 * 109.46928 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99875 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00062 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99828 * 180.02562 * 5 4 3 8 8 H 1.09001 * 109.50466 * 60.07745 * 7 5 4 9 9 C 1.53125 * 109.50456 * 299.99827 * 7 5 4 10 10 C 1.53120 * 109.16323 * 182.36725 * 9 7 5 11 11 C 1.53034 * 109.27934 * 57.65221 * 10 9 7 12 12 N 1.46850 * 109.52635 * 300.82407 * 11 10 9 13 13 C 1.46896 * 110.99968 * 185.83765 * 12 11 10 14 14 C 1.52997 * 109.47114 * 66.04365 * 13 12 11 15 15 C 1.50706 * 109.47238 * 179.97438 * 14 13 12 16 16 O 1.21279 * 119.99507 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00020 * 180.02562 * 15 14 13 18 18 C 1.46495 * 119.99828 * 0.02562 * 17 15 14 19 19 C 1.46496 * 119.99544 * 180.02562 * 17 15 14 20 20 C 1.50699 * 109.47598 * 90.00303 * 19 17 15 21 21 H 1.08005 * 119.99628 * 359.97438 * 20 19 17 22 22 C 1.37877 * 120.00538 * 179.97438 * 20 19 17 23 23 N 1.31507 * 120.00182 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99668 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47170 * 89.99666 * 24 22 20 26 26 H 1.48495 * 109.46883 * 209.99839 * 24 22 20 27 27 H 1.48496 * 109.47123 * 329.99923 * 24 22 20 28 28 C 1.46845 * 111.19675 * 61.73851 * 12 11 10 29 29 H 1.08998 * 109.47329 * 59.99346 * 1 2 3 30 30 H 1.09001 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46913 * 300.00007 * 1 2 3 32 32 H 1.09001 * 109.46447 * 240.00241 * 2 1 3 33 33 H 1.09004 * 109.47046 * 120.00299 * 2 1 3 34 34 H 1.09002 * 109.47321 * 60.00243 * 3 2 1 35 35 H 1.09004 * 109.47493 * 300.00025 * 3 2 1 36 36 H 0.97002 * 120.00255 * 0.02562 * 4 3 2 37 37 H 1.08997 * 109.51790 * 62.46160 * 9 7 5 38 38 H 1.08993 * 109.52193 * 302.27529 * 9 7 5 39 39 H 1.09003 * 109.50242 * 297.71588 * 10 9 7 40 40 H 1.08991 * 109.50180 * 177.59977 * 10 9 7 41 41 H 1.08995 * 109.46254 * 180.80141 * 11 10 9 42 42 H 1.09004 * 109.45193 * 60.83091 * 11 10 9 43 43 H 1.09001 * 109.47271 * 306.04634 * 13 12 11 44 44 H 1.09004 * 109.47041 * 186.04481 * 13 12 11 45 45 H 1.09001 * 109.46832 * 59.99999 * 14 13 12 46 46 H 1.09000 * 109.47611 * 300.00296 * 14 13 12 47 47 H 1.08997 * 109.47477 * 90.00366 * 18 17 15 48 48 H 1.09004 * 109.46971 * 209.99938 * 18 17 15 49 49 H 1.08993 * 109.47768 * 330.00002 * 18 17 15 50 50 H 1.09008 * 109.47096 * 209.99661 * 19 17 15 51 51 H 1.09003 * 109.47776 * 329.99537 * 19 17 15 52 52 H 0.97002 * 119.99991 * 180.02562 * 23 22 20 53 53 H 1.09004 * 109.46600 * 58.27717 * 28 12 11 54 54 H 1.09000 * 109.46136 * 178.24222 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0012 6 8 3.5725 3.6600 -0.0008 7 6 5.6858 2.6097 -0.0025 8 1 6.0490 2.0971 -0.8932 9 6 6.1981 1.8881 1.2472 10 6 7.7281 1.9442 1.2683 11 6 8.1807 3.4057 1.2353 12 7 7.6660 4.0516 0.0211 13 6 8.1946 5.4155 -0.1141 14 6 9.7057 5.3561 -0.3460 15 6 10.2480 6.7553 -0.4853 16 8 9.4995 7.7063 -0.4064 17 7 11.5646 6.9498 -0.6975 18 6 12.4686 5.8010 -0.7934 19 6 12.0917 8.3100 -0.8324 20 6 12.4906 8.8310 0.5242 21 1 12.3638 8.2111 1.3994 22 6 13.0175 10.0991 0.6481 23 7 13.3652 10.5539 1.8321 24 14 13.2362 11.1716 -0.8656 25 1 12.0059 11.9734 -1.0861 26 1 14.3913 12.0827 -0.6639 27 1 13.4852 10.3113 -2.0500 28 6 6.1977 4.0519 0.0015 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9901 0.6024 -0.0013 37 1 5.8719 0.8483 1.2267 38 1 5.8034 2.3772 2.1377 39 1 8.1235 1.4211 0.3975 40 1 8.0971 1.4693 2.1772 41 1 9.2698 3.4487 1.2359 42 1 7.7963 3.9246 2.1135 43 1 7.9887 5.9770 0.7972 44 1 7.7162 5.9084 -0.9605 45 1 9.9117 4.7946 -1.2572 46 1 10.1842 4.8633 0.5004 47 1 12.5351 5.4766 -1.8318 48 1 13.4586 6.0870 -0.4380 49 1 12.0848 4.9846 -0.1816 50 1 12.9627 8.2988 -1.4878 51 1 11.3246 8.9564 -1.2587 52 1 13.7355 11.4462 1.9193 53 1 5.8227 4.5679 0.8854 54 1 5.8465 4.5643 -0.8942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092795230.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:36 Heat of formation + Delta-G solvation = -113.318368 kcal Electronic energy + Delta-G solvation = -29600.098725 eV Core-core repulsion = 25569.941276 eV Total energy + Delta-G solvation = -4030.157450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.37789 -40.73902 -39.33896 -36.80555 -36.66988 -35.37340 -34.69450 -33.50136 -32.09862 -31.72307 -30.05597 -27.43888 -27.30523 -26.18531 -24.74648 -24.11891 -22.88570 -22.56481 -21.42963 -20.59355 -19.88087 -19.16115 -18.36225 -17.76007 -17.27464 -17.09211 -16.85606 -16.80270 -16.34169 -16.06351 -15.82871 -15.53063 -15.28325 -15.05598 -14.79283 -14.53448 -14.37609 -14.11807 -13.90748 -13.75438 -13.67491 -13.63840 -13.41199 -13.33090 -13.24409 -12.95807 -12.79663 -12.71329 -12.49837 -12.38938 -12.16511 -12.04370 -12.02470 -11.76472 -11.75458 -11.69869 -11.61110 -11.36615 -10.84873 -10.75748 -10.66718 -10.13067 -9.44133 -9.38102 -8.35725 -6.40852 1.31316 1.35916 1.44265 1.58169 1.80458 2.05454 2.29745 2.33380 2.94040 2.99079 3.56961 3.71594 3.81186 3.87303 3.93105 3.99088 4.07415 4.11210 4.20516 4.24498 4.34431 4.37671 4.41073 4.55177 4.64499 4.65368 4.68392 4.69664 4.71416 4.76356 4.84044 4.85286 4.88916 4.91869 4.98297 4.99702 5.00702 5.02122 5.11720 5.15017 5.19218 5.24338 5.33410 5.43788 5.44996 5.48340 5.62564 5.92633 6.06463 6.22538 6.52766 6.60267 6.70825 7.20158 7.23105 7.42728 8.81278 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026163 B = 0.001752 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.939161 B =15982.316353 C =16430.264098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.714 5.714 5 C 0.515 3.485 6 O -0.591 6.591 7 C -0.091 4.091 8 H 0.131 0.869 9 C -0.107 4.107 10 C -0.105 4.105 11 C 0.036 3.964 12 N -0.524 5.524 13 C 0.078 3.922 14 C -0.112 4.112 15 C 0.494 3.506 16 O -0.602 6.602 17 N -0.608 5.608 18 C 0.077 3.923 19 C 0.222 3.778 20 C -0.538 4.538 21 H 0.028 0.972 22 C 0.010 3.990 23 N -0.946 5.946 24 Si 0.949 3.051 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.236 1.236 28 C 0.076 3.924 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.418 0.582 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.017 0.983 43 H 0.012 0.988 44 H 0.066 0.934 45 H 0.130 0.870 46 H 0.110 0.890 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.052 0.948 51 H 0.016 0.984 52 H 0.268 0.732 53 H 0.014 0.986 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.158 -32.047 -6.187 36.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.009 4.009 4 N -0.366 5.366 5 C 0.302 3.698 6 O -0.472 6.472 7 C -0.113 4.113 8 H 0.148 0.852 9 C -0.145 4.145 10 C -0.143 4.143 11 C -0.092 4.092 12 N -0.248 5.248 13 C -0.050 4.050 14 C -0.152 4.152 15 C 0.283 3.717 16 O -0.484 6.484 17 N -0.339 5.339 18 C -0.065 4.065 19 C 0.099 3.901 20 C -0.577 4.577 21 H 0.046 0.954 22 C -0.188 4.188 23 N -0.586 5.586 24 Si 0.772 3.228 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.159 1.159 28 C -0.053 4.053 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.256 0.744 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.085 0.915 45 H 0.148 0.852 46 H 0.128 0.872 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.111 0.889 50 H 0.070 0.930 51 H 0.034 0.966 52 H 0.077 0.923 53 H 0.033 0.967 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.715 -30.980 -6.463 36.267 hybrid contribution -0.070 1.839 0.811 2.012 sum -17.785 -29.140 -5.652 34.604 Atomic orbital electron populations 1.21709 0.94533 1.02794 1.02016 1.21677 0.96938 0.93708 1.03916 1.21452 0.79420 0.98930 1.01132 1.45889 1.07481 1.08664 1.74611 1.21002 0.90733 0.83473 0.74597 1.90716 1.71545 1.33428 1.51467 1.21272 0.89418 0.97191 1.03392 0.85168 1.21615 0.96811 1.01370 0.94699 1.21566 0.94291 0.94070 1.04340 1.22429 1.01142 0.96271 0.89345 1.61961 1.07073 1.16983 1.38752 1.21614 0.94425 0.88866 1.00132 1.21545 0.95333 0.91881 1.06419 1.21421 0.81988 0.92530 0.75720 1.90641 1.58689 1.46142 1.52898 1.47975 1.07573 1.08344 1.69960 1.21996 0.94035 0.87351 1.03114 1.19329 0.94152 0.81151 0.95419 1.21592 1.41623 1.00738 0.93726 0.95387 1.25870 0.94360 0.98993 0.99554 1.70049 1.44384 1.18812 1.25324 0.85698 0.78041 0.79055 0.80047 1.20481 1.19792 1.15939 1.21725 0.86998 0.96143 1.00389 0.92751 0.90983 0.92820 0.90005 0.90040 0.93064 0.92933 0.74387 0.87796 0.93218 0.88999 0.89153 0.89178 0.96491 0.96944 0.91514 0.85225 0.87181 0.90036 0.91691 0.88941 0.93016 0.96611 0.92261 0.96721 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.20 16 2 C -0.12 -0.67 6.05 30.59 0.19 -0.49 16 3 C 0.11 1.39 5.67 86.38 0.49 1.88 16 4 N -0.71 -8.19 5.46 -463.06 -2.53 -10.72 16 5 C 0.52 10.03 7.16 87.66 0.63 10.66 16 6 O -0.59 -18.02 15.99 -3.02 -0.05 -18.07 16 7 C -0.09 -1.42 2.69 -11.49 -0.03 -1.45 16 8 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 9 C -0.11 -1.15 5.16 30.68 0.16 -0.99 16 10 C -0.11 -1.12 6.09 30.65 0.19 -0.93 16 11 C 0.04 0.66 5.29 86.32 0.46 1.11 16 12 N -0.52 -11.78 4.65 -896.36 -4.17 -15.95 16 13 C 0.08 2.33 4.25 86.30 0.37 2.70 16 14 C -0.11 -3.08 4.19 29.85 0.12 -2.95 16 15 C 0.49 20.36 7.67 87.66 0.67 21.03 16 16 O -0.60 -31.49 15.56 -3.02 -0.05 -31.54 16 17 N -0.61 -24.81 2.86 -851.15 -2.43 -27.24 16 18 C 0.08 2.11 10.24 127.77 1.31 3.42 16 19 C 0.22 11.06 4.23 85.63 0.36 11.42 16 20 C -0.54 -32.41 9.94 25.60 0.25 -32.15 16 21 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 22 C 0.01 0.61 5.47 84.66 0.46 1.07 16 23 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 24 Si 0.95 45.39 27.47 68.60 1.88 47.28 16 25 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 28 C 0.08 1.82 4.04 86.33 0.35 2.17 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.42 1.68 7.94 -92.71 -0.74 0.94 16 37 H 0.10 0.42 7.64 -2.39 -0.02 0.40 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 1.50 6.22 -2.39 -0.01 1.49 16 42 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 44 H 0.07 2.19 7.94 -2.38 -0.02 2.17 16 45 H 0.13 2.72 8.11 -2.39 -0.02 2.70 16 46 H 0.11 2.57 5.70 -2.39 -0.01 2.56 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.06 1.93 8.07 -2.38 -0.02 1.91 16 49 H 0.09 1.94 6.44 -2.39 -0.02 1.93 16 50 H 0.05 2.34 7.13 -2.38 -0.02 2.32 16 51 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 52 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 53 H 0.01 0.43 8.08 -2.38 -0.02 0.41 16 54 H 0.06 1.77 7.99 -2.39 -0.02 1.75 16 Total: -1.00 -88.56 423.15 -0.28 -88.84 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.07 Total: 11.62 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.69 Total: 16.31 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -8.83 Total: -114.44 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.10 Total: -49.61 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.28 kcal Total: -88.56 -0.28 -88.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092795230.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.477 kcal (2) G-P(sol) polarization free energy of solvation -88.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds