Wall clock time and date at job start Sat Apr 11 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46511 * 2 1 4 4 N 1.46502 * 109.46787 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00086 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00148 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99983 * 180.02562 * 5 4 3 8 8 C 1.53117 * 109.52129 * 179.97438 * 7 5 4 9 9 C 1.53042 * 109.27738 * 182.37046 * 8 7 5 10 10 N 1.46851 * 109.51830 * 59.18214 * 9 8 7 11 11 C 1.46898 * 110.99682 * 174.15734 * 10 9 8 12 12 C 1.53006 * 109.47006 * 170.00115 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00035 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99801 * 359.97438 * 15 13 12 17 17 C 1.46504 * 119.99735 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47527 * 89.99956 * 17 15 13 19 19 H 1.08009 * 119.99486 * 359.97438 * 18 17 15 20 20 C 1.37868 * 120.00223 * 179.97438 * 18 17 15 21 21 N 1.31519 * 120.00106 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47346 * 59.99815 * 22 20 18 24 24 H 1.48503 * 109.47098 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46814 * 299.99771 * 22 20 18 26 26 C 1.46839 * 111.19765 * 298.25422 * 10 9 8 27 27 C 1.53038 * 109.52321 * 61.74421 * 26 10 9 28 28 H 1.09003 * 109.46948 * 299.99556 * 1 2 3 29 29 H 1.08991 * 109.47619 * 59.99749 * 1 2 3 30 30 H 1.09004 * 109.46851 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46972 * 240.00540 * 2 1 3 32 32 H 1.09000 * 109.47095 * 119.99978 * 2 1 3 33 33 H 1.09003 * 109.47152 * 60.00569 * 3 2 1 34 34 H 1.08998 * 109.47735 * 300.00210 * 3 2 1 35 35 H 0.97000 * 120.00071 * 0.02562 * 4 3 2 36 36 H 1.09006 * 109.52202 * 300.11877 * 7 5 4 37 37 H 1.09006 * 109.50431 * 62.43510 * 8 7 5 38 38 H 1.08996 * 109.50401 * 302.31383 * 8 7 5 39 39 H 1.08992 * 109.46857 * 299.16430 * 9 8 7 40 40 H 1.09007 * 109.45121 * 179.18665 * 9 8 7 41 41 H 1.09001 * 109.47392 * 50.00413 * 11 10 9 42 42 H 1.09001 * 109.47520 * 290.00136 * 11 10 9 43 43 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 44 44 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 45 45 H 1.08999 * 109.46908 * 90.00559 * 16 15 13 46 46 H 1.09000 * 109.47065 * 210.00008 * 16 15 13 47 47 H 1.08990 * 109.47304 * 330.00300 * 16 15 13 48 48 H 1.09004 * 109.46561 * 209.99850 * 17 15 13 49 49 H 1.08998 * 109.47073 * 329.99510 * 17 15 13 50 50 H 0.97000 * 119.99819 * 180.02562 * 21 20 18 51 51 H 1.09000 * 109.46389 * 181.75688 * 26 10 9 52 52 H 1.08998 * 109.46466 * 301.72418 * 26 10 9 53 53 H 1.09001 * 109.50415 * 180.87699 * 27 26 10 54 54 H 1.09005 * 109.50244 * 60.76180 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1788 2.6099 -0.0002 6 8 3.5723 3.6602 0.0002 7 6 5.6858 2.6099 -0.0014 8 6 6.1974 4.0531 -0.0013 9 6 7.7266 4.0470 -0.0623 10 7 8.1663 3.3530 -1.2794 11 6 9.6231 3.4479 -1.4423 12 6 10.0723 2.5148 -2.5686 13 6 11.5669 2.6118 -2.7354 14 8 12.2095 3.3544 -2.0237 15 7 12.1893 1.8740 -3.6759 16 6 11.4129 0.9773 -4.5359 17 6 13.6422 1.9687 -3.8383 18 6 14.3141 0.9497 -2.9544 19 1 13.7183 0.2971 -2.3333 20 6 15.6891 0.8506 -2.9384 21 7 16.4145 1.6450 -3.6951 22 14 16.5219 -0.4120 -1.8422 23 1 16.0684 -1.7739 -2.2227 24 1 17.9946 -0.3169 -2.0078 25 1 16.1646 -0.1493 -0.4248 26 6 7.7270 1.9518 -1.2797 27 6 6.1978 1.8953 -1.2550 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8901 34 1 1.6765 1.9565 -0.8899 35 1 3.9900 0.6026 -0.0013 36 1 6.0508 2.0937 0.8865 37 1 5.8715 4.5546 0.9100 38 1 5.8006 4.5799 -0.8691 39 1 8.1230 3.5322 0.8127 40 1 8.0933 5.0735 -0.0769 41 1 10.1125 3.1571 -0.5127 42 1 9.8949 4.4740 -1.6904 43 1 9.8006 1.4888 -2.3205 44 1 9.5831 2.8057 -3.4982 45 1 11.0950 1.5155 -5.4288 46 1 12.0300 0.1266 -4.8249 47 1 10.5364 0.6229 -3.9938 48 1 13.9047 1.7766 -4.8787 49 1 13.9747 2.9682 -3.5583 50 1 17.3819 1.5750 -3.6841 51 1 8.0942 1.4563 -2.1785 52 1 8.1234 1.4467 -0.3990 53 1 5.8723 0.8552 -1.2395 54 1 5.8010 2.3882 -2.1426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179194972.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:49 Heat of formation + Delta-G solvation = -112.820347 kcal Electronic energy + Delta-G solvation = -29568.903622 eV Core-core repulsion = 25538.767768 eV Total energy + Delta-G solvation = -4030.135854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.32245 -40.69633 -39.35119 -36.79893 -36.59794 -35.29096 -34.69344 -33.53177 -32.04834 -31.32695 -29.59369 -27.81030 -27.23706 -26.11586 -24.79891 -24.21675 -22.82637 -22.52053 -21.50492 -20.52651 -19.82997 -18.69530 -18.30960 -17.87047 -17.18118 -17.04516 -16.90172 -16.64711 -16.27197 -16.11713 -15.81491 -15.60186 -15.28380 -15.03463 -14.56396 -14.40528 -14.36489 -13.97482 -13.88771 -13.73500 -13.61737 -13.43277 -13.31866 -13.18828 -13.08095 -12.91015 -12.79309 -12.65734 -12.48378 -12.26260 -12.20727 -12.18504 -12.04315 -12.00461 -11.74202 -11.71710 -11.60707 -11.29940 -10.71883 -10.64019 -10.55957 -10.08892 -9.40101 -9.27218 -8.21863 -6.37287 1.36564 1.40979 1.48346 1.62973 1.86699 2.21862 2.29570 2.43457 2.96781 3.07476 3.60573 3.74059 3.81446 3.90612 3.94892 3.97982 4.08878 4.12728 4.28061 4.29848 4.36922 4.42497 4.43049 4.54537 4.63152 4.65496 4.67564 4.76125 4.76369 4.79028 4.86249 4.89998 4.94156 4.97229 4.99004 5.04415 5.06320 5.14269 5.16831 5.20737 5.24817 5.25573 5.33834 5.38937 5.51580 5.56756 5.85426 6.04224 6.06620 6.17551 6.56075 6.70190 6.81641 7.26484 7.28780 7.50878 8.84889 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.001792 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.738013 B =15623.741002 C =16188.364180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.116 3.884 4 N -0.719 5.719 5 C 0.518 3.482 6 O -0.586 6.586 7 C -0.104 4.104 8 C -0.088 4.088 9 C 0.057 3.943 10 N -0.540 5.540 11 C 0.081 3.919 12 C -0.121 4.121 13 C 0.493 3.507 14 O -0.603 6.603 15 N -0.611 5.611 16 C 0.078 3.922 17 C 0.258 3.742 18 C -0.544 4.544 19 H 0.055 0.945 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.258 1.258 24 H -0.279 1.279 25 H -0.278 1.278 26 C 0.040 3.960 27 C -0.096 4.096 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.416 0.584 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.022 0.978 49 H -0.005 1.005 50 H 0.267 0.733 51 H 0.099 0.901 52 H 0.041 0.959 53 H 0.102 0.898 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.510 -7.584 5.629 32.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.008 4.008 4 N -0.371 5.371 5 C 0.305 3.695 6 O -0.466 6.466 7 C -0.125 4.125 8 C -0.126 4.126 9 C -0.071 4.071 10 N -0.266 5.266 11 C -0.047 4.047 12 C -0.161 4.161 13 C 0.282 3.718 14 O -0.485 6.485 15 N -0.342 5.342 16 C -0.064 4.064 17 C 0.136 3.864 18 C -0.583 4.583 19 H 0.073 0.927 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.793 3.207 23 H -0.183 1.183 24 H -0.204 1.204 25 H -0.203 1.203 26 C -0.087 4.087 27 C -0.134 4.134 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.040 0.960 49 H 0.013 0.987 50 H 0.076 0.924 51 H 0.117 0.883 52 H 0.060 0.940 53 H 0.121 0.879 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.672 -6.219 5.506 32.743 hybrid contribution 1.647 -0.660 1.114 2.095 sum -30.024 -6.879 6.620 31.506 Atomic orbital electron populations 1.21702 0.94451 1.02729 1.02102 1.21686 0.97027 0.93992 1.03745 1.21433 0.79456 0.98682 1.01226 1.45974 1.07542 1.08842 1.74742 1.20974 0.90650 0.83360 0.74500 1.90691 1.71384 1.33171 1.51362 1.21415 0.89992 0.98975 1.02124 1.21287 0.93512 0.95251 1.02579 1.22089 0.95345 0.99318 0.90353 1.62043 1.10975 1.15415 1.38120 1.21615 0.86884 0.99671 0.96540 1.21753 0.89167 1.02934 1.02230 1.21408 0.91531 0.79454 0.79389 1.90640 1.69462 1.41801 1.46557 1.48198 1.08657 1.42231 1.35138 1.21947 0.96328 0.93566 0.94540 1.18741 0.76339 0.95538 0.95769 1.21695 0.92204 1.19009 1.25357 0.92666 1.25894 0.97973 0.98323 0.97125 1.70054 1.06324 1.39706 1.40779 0.85457 0.77235 0.79407 0.78639 1.18254 1.20443 1.20337 1.22391 0.95533 0.88283 1.02510 1.21562 0.94468 1.01383 0.96010 0.92677 0.92631 0.91196 0.90180 0.90315 0.92850 0.92802 0.74661 0.86850 0.91294 0.92049 0.94281 0.90954 0.95827 0.91797 0.86330 0.86095 0.91235 0.91680 0.88357 0.95950 0.98678 0.92431 0.88261 0.94029 0.87930 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 71.98 0.71 -0.14 16 2 C -0.13 -0.67 6.05 30.60 0.19 -0.49 16 3 C 0.12 1.29 5.67 86.38 0.49 1.78 16 4 N -0.72 -7.70 5.46 -463.05 -2.53 -10.23 16 5 C 0.52 9.04 7.16 87.66 0.63 9.67 16 6 O -0.59 -15.84 15.98 -3.04 -0.05 -15.89 16 7 C -0.10 -1.44 2.59 -11.46 -0.03 -1.47 16 8 C -0.09 -1.65 4.68 30.65 0.14 -1.51 16 9 C 0.06 1.13 5.42 86.33 0.47 1.60 16 10 N -0.54 -11.25 4.81 -896.35 -4.31 -15.56 16 11 C 0.08 2.20 4.56 86.31 0.39 2.59 16 12 C -0.12 -3.14 3.50 29.85 0.10 -3.04 16 13 C 0.49 20.09 7.67 87.66 0.67 20.76 16 14 O -0.60 -31.36 15.56 -3.04 -0.05 -31.41 16 15 N -0.61 -25.50 2.86 -851.15 -2.43 -27.94 16 16 C 0.08 2.19 10.24 127.77 1.31 3.50 16 17 C 0.26 14.01 5.16 85.63 0.44 14.45 16 18 C -0.54 -31.39 9.38 25.60 0.24 -31.15 16 19 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 20 C 0.01 0.33 5.46 84.65 0.46 0.80 16 21 N -0.93 -56.53 13.29 21.44 0.28 -56.25 16 22 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 C 0.04 0.59 4.85 86.33 0.42 1.01 16 27 C -0.10 -1.08 5.26 30.64 0.16 -0.92 16 28 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.42 1.79 7.96 -92.71 -0.74 1.05 16 36 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.06 1.39 8.04 -2.39 -0.02 1.37 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 1.54 8.12 -2.38 -0.02 1.53 16 41 H 0.02 0.73 8.04 -2.39 -0.02 0.71 16 42 H 0.06 1.99 8.10 -2.39 -0.02 1.97 16 43 H 0.12 2.39 5.47 -2.39 -0.01 2.37 16 44 H 0.12 2.57 8.11 -2.39 -0.02 2.55 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 47 H 0.10 1.92 6.44 -2.39 -0.02 1.91 16 48 H 0.02 1.23 8.07 -2.39 -0.02 1.22 16 49 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 50 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 51 H 0.10 1.24 5.81 -2.39 -0.01 1.23 16 52 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.10 0.52 7.67 -2.39 -0.02 0.50 16 54 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -82.40 425.68 -0.13 -82.53 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.12 Total: 10.61 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 6.80 Total: 17.44 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -8.98 Total: -109.98 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.10 Total: -47.30 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -82.40 -0.13 -82.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179194972.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.289 kcal (2) G-P(sol) polarization free energy of solvation -82.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds