Wall clock time and date at job start Sat Apr 11 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46828 * 2 1 4 4 N 1.46500 * 109.47412 * 119.99926 * 2 1 3 5 5 C 1.34777 * 119.99671 * 154.99885 * 4 2 1 6 6 O 1.21279 * 120.00225 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99438 * 180.02562 * 5 4 2 8 8 H 1.09005 * 109.47172 * 299.99741 * 7 5 4 9 9 C 1.52992 * 109.47200 * 60.00105 * 7 5 4 10 10 C 1.53011 * 109.47108 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.46663 * 300.00231 * 10 9 7 12 12 C 1.52992 * 109.47547 * 60.00039 * 11 10 9 13 13 H 1.09006 * 109.47478 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47465 * 59.99615 * 12 11 10 15 15 C 1.34779 * 119.99916 * 84.99914 * 14 12 11 16 16 O 1.21583 * 119.99823 * 0.02562 * 15 14 12 17 17 N 1.34776 * 119.99962 * 180.02562 * 15 14 12 18 18 C 1.46492 * 120.00063 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47395 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47600 * 179.97438 * 19 18 17 21 21 C 1.50694 * 109.47460 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00179 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00472 * 180.02562 * 21 20 19 24 24 N 1.31514 * 119.99350 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00608 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47339 * 179.97438 * 25 23 21 27 27 H 1.48493 * 109.47239 * 300.00306 * 25 23 21 28 28 H 1.48504 * 109.46636 * 59.99865 * 25 23 21 29 29 C 1.52998 * 109.47322 * 299.99654 * 12 11 10 30 30 H 1.09000 * 109.46737 * 299.99824 * 1 2 3 31 31 H 1.08996 * 109.47312 * 60.00066 * 1 2 3 32 32 H 1.09001 * 109.46502 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47060 * 240.00560 * 2 1 3 34 34 H 1.08991 * 109.47193 * 60.00241 * 3 2 1 35 35 H 1.09004 * 109.46839 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47120 * 300.00052 * 3 2 1 37 37 H 0.96995 * 120.00011 * 335.00438 * 4 2 1 38 38 H 1.08998 * 109.47411 * 60.00452 * 9 7 5 39 39 H 1.08998 * 109.47739 * 299.99699 * 9 7 5 40 40 H 1.08998 * 109.47052 * 179.97438 * 10 9 7 41 41 H 1.08995 * 109.46903 * 59.99846 * 10 9 7 42 42 H 1.08995 * 109.47147 * 299.99465 * 11 10 9 43 43 H 1.09003 * 109.46932 * 179.97438 * 11 10 9 44 44 H 0.96994 * 119.99754 * 265.00818 * 14 12 11 45 45 H 0.97003 * 119.99592 * 0.02562 * 17 15 14 46 46 H 1.09002 * 109.47526 * 59.99770 * 18 17 15 47 47 H 1.09006 * 109.47127 * 299.99798 * 18 17 15 48 48 H 1.09003 * 109.47604 * 59.99567 * 19 18 17 49 49 H 1.08999 * 109.47292 * 299.99932 * 19 18 17 50 50 H 1.09005 * 109.46800 * 60.00280 * 20 19 18 51 51 H 1.08998 * 109.47382 * 300.00079 * 20 19 18 52 52 H 0.97005 * 119.99661 * 179.97438 * 24 23 21 53 53 H 1.09000 * 109.47624 * 179.97438 * 29 12 11 54 54 H 1.09005 * 109.46975 * 300.00318 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2404 -1.2591 1.1942 6 8 3.9359 -1.1986 0.2025 7 6 3.7426 -1.9700 2.4245 8 1 3.7791 -1.2699 3.2592 9 6 2.7985 -3.1240 2.7678 10 6 3.3087 -3.8461 4.0166 11 6 4.7112 -4.3964 3.7501 12 6 5.6552 -3.2424 3.4069 13 1 6.6546 -3.6345 3.2174 14 7 5.7048 -2.3017 4.5289 15 6 6.5524 -2.5195 5.5539 16 8 7.2761 -3.4965 5.5472 17 7 6.5977 -1.6544 6.5864 18 6 7.5193 -1.8909 7.7003 19 6 7.3717 -0.7700 8.7311 20 6 8.3338 -1.0172 9.8948 21 6 8.1888 0.0872 10.9098 22 1 7.4816 0.8859 10.7415 23 6 8.9599 0.0787 12.0528 24 7 9.8215 -0.8936 12.2574 25 14 8.7808 1.4480 13.3106 26 1 9.7144 1.2079 14.4400 27 1 9.0991 2.7507 12.6729 28 1 7.3857 1.4736 13.8191 29 6 5.1451 -2.5203 2.1582 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.4623 -0.7387 1.9894 38 1 2.7620 -3.8241 1.9332 39 1 1.7993 -2.7320 2.9572 40 1 2.6359 -4.6680 4.2613 41 1 3.3456 -3.1462 4.8513 42 1 4.6743 -5.0963 2.9153 43 1 5.0749 -4.9105 4.6398 44 1 5.1276 -1.5223 4.5341 45 1 6.0199 -0.8752 6.5919 46 1 8.5433 -1.9092 7.3271 47 1 7.2859 -2.8473 8.1682 48 1 6.3477 -0.7520 9.1043 49 1 7.6048 0.1867 8.2635 50 1 9.3579 -1.0353 9.5219 51 1 8.1003 -1.9738 10.3623 52 1 10.3643 -0.8994 13.0614 53 1 5.8174 -1.6979 1.9139 54 1 5.1082 -3.2202 1.3233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342036940.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:11 Heat of formation + Delta-G solvation = -134.560110 kcal Electronic energy + Delta-G solvation = -29606.040243 eV Core-core repulsion = 25574.961682 eV Total energy + Delta-G solvation = -4031.078561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.71693 -40.82301 -38.98286 -36.97823 -36.83291 -35.17117 -34.78572 -33.12099 -32.61265 -31.58892 -30.49176 -28.31311 -28.08633 -25.14081 -24.92906 -23.47850 -22.38395 -22.26384 -22.05334 -21.37795 -20.12236 -19.47028 -18.51113 -17.98278 -17.33089 -17.01929 -16.82839 -16.50558 -16.44402 -15.77329 -15.68437 -15.52823 -15.33270 -15.09702 -14.95475 -14.70052 -14.24446 -13.91766 -13.73638 -13.63019 -13.57265 -13.42581 -13.23035 -13.14770 -13.05913 -12.91587 -12.70265 -12.53194 -12.38624 -12.35292 -12.26168 -11.90637 -11.77671 -11.64509 -11.61208 -11.44304 -11.27979 -11.23380 -11.11338 -10.66988 -10.53081 -10.30314 -10.07268 -9.72607 -8.17583 -6.29149 1.42663 1.45840 1.53629 1.64665 1.74948 2.18097 2.23967 2.43371 3.15965 3.35098 3.53013 3.68836 3.77939 3.95017 4.06102 4.14683 4.19996 4.22070 4.25981 4.26867 4.34269 4.36563 4.47445 4.58685 4.65447 4.67172 4.74777 4.77321 4.85921 4.95231 4.98473 5.01138 5.04928 5.08052 5.10718 5.14823 5.19411 5.28334 5.29270 5.33273 5.34110 5.40758 5.49512 5.57399 5.59773 5.64151 5.73302 5.86083 6.04992 6.24375 6.60338 6.88005 7.15811 7.30690 7.40217 7.63832 8.94208 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.001811 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.998233 B =15461.016675 C =16717.083516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.583 6.583 7 C -0.100 4.100 8 H 0.114 0.886 9 C -0.100 4.100 10 C -0.110 4.110 11 C -0.131 4.131 12 C 0.168 3.832 13 H 0.064 0.936 14 N -0.722 5.722 15 C 0.698 3.302 16 O -0.640 6.640 17 N -0.731 5.731 18 C 0.151 3.849 19 C -0.099 4.099 20 C 0.023 3.977 21 C -0.541 4.541 22 H 0.067 0.933 23 C -0.005 4.005 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.287 1.287 27 H -0.266 1.266 28 H -0.265 1.265 29 C -0.096 4.096 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.408 0.592 45 H 0.411 0.589 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.069 0.931 49 H 0.067 0.933 50 H -0.009 1.009 51 H -0.008 1.008 52 H 0.263 0.737 53 H 0.064 0.936 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.443 0.942 -25.960 36.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 C -0.219 4.219 4 N -0.366 5.366 5 C 0.305 3.695 6 O -0.463 6.463 7 C -0.122 4.122 8 H 0.132 0.868 9 C -0.138 4.138 10 C -0.147 4.147 11 C -0.170 4.170 12 C 0.062 3.938 13 H 0.083 0.917 14 N -0.380 5.380 15 C 0.398 3.602 16 O -0.521 6.521 17 N -0.386 5.386 18 C 0.026 3.974 19 C -0.137 4.137 20 C -0.015 4.015 21 C -0.579 4.579 22 H 0.086 0.914 23 C -0.202 4.202 24 N -0.575 5.575 25 Si 0.792 3.208 26 H -0.213 1.213 27 H -0.191 1.191 28 H -0.189 1.189 29 C -0.134 4.134 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.245 0.755 45 H 0.248 0.752 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.009 0.991 51 H 0.011 0.989 52 H 0.071 0.929 53 H 0.083 0.917 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.197 0.055 -26.572 35.938 hybrid contribution 0.144 0.933 1.158 1.494 sum -24.053 0.988 -25.414 35.005 Atomic orbital electron populations 1.22024 0.91808 1.03196 1.04022 1.20978 0.95642 0.92564 0.88088 1.22158 1.00399 0.96168 1.03214 1.46078 1.17351 1.55784 1.17411 1.20940 0.81351 0.77782 0.89397 1.90703 1.57409 1.61377 1.36804 1.21336 0.96220 0.98730 0.95869 0.86788 1.21519 0.98338 0.95692 0.98258 1.21438 0.95033 1.00538 0.97703 1.21930 0.96009 0.97357 1.01726 1.20766 0.99322 0.89270 0.84397 0.91736 1.45045 1.42731 1.29648 1.20537 1.16180 0.80852 0.82578 0.80598 1.90891 1.47812 1.32404 1.81011 1.45013 1.44549 1.28322 1.20744 1.21042 0.91989 0.98595 0.85804 1.21577 1.00522 0.96973 0.94656 1.18949 0.93910 0.95716 0.92946 1.21652 1.21808 1.09501 1.04927 0.91450 1.26040 0.94865 0.98622 1.00685 1.70115 1.25128 1.34228 1.28010 0.85459 0.78303 0.79143 0.77878 1.21273 1.19077 1.18936 1.21509 0.95161 1.00627 0.96106 0.90666 0.90277 0.91620 0.91787 0.91286 0.94733 0.90688 0.74793 0.91403 0.88784 0.90593 0.91521 0.90064 0.93742 0.75499 0.75240 0.93851 0.93566 0.91190 0.91449 0.99091 0.98916 0.92876 0.91745 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.38 71.98 0.68 0.12 16 2 C 0.13 1.24 3.18 44.99 0.14 1.38 16 3 C -0.16 -1.64 9.48 71.98 0.68 -0.95 16 4 N -0.71 -6.01 4.97 -442.52 -2.20 -8.21 16 5 C 0.52 7.45 7.12 87.66 0.62 8.08 16 6 O -0.58 -13.96 15.64 -3.03 -0.05 -14.01 16 7 C -0.10 -1.02 2.35 -11.54 -0.03 -1.05 16 8 H 0.11 0.73 6.51 -2.38 -0.02 0.72 16 9 C -0.10 -0.72 5.10 30.60 0.16 -0.56 16 10 C -0.11 -1.17 5.77 30.60 0.18 -0.99 16 11 C -0.13 -2.20 5.60 30.59 0.17 -2.03 16 12 C 0.17 3.17 2.78 44.99 0.13 3.30 16 13 H 0.06 1.61 7.57 -2.38 -0.02 1.60 16 14 N -0.72 -14.00 4.24 -457.81 -1.94 -15.94 16 15 C 0.70 20.55 8.53 179.05 1.53 22.08 16 16 O -0.64 -25.44 16.00 -3.98 -0.06 -25.50 16 17 N -0.73 -20.01 5.56 -478.55 -2.66 -22.67 16 18 C 0.15 5.39 5.67 86.38 0.49 5.88 16 19 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 20 C 0.02 1.17 4.97 29.85 0.15 1.32 16 21 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 22 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 23 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 24 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 25 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 26 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 29 C -0.10 -1.48 4.18 30.60 0.13 -1.35 16 30 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.22 8.14 -2.39 -0.02 0.21 16 33 H 0.06 0.92 7.58 -2.39 -0.02 0.91 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.41 0.96 8.02 -92.71 -0.74 0.21 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 0.22 7.56 -2.39 -0.02 0.20 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.73 7.60 -2.39 -0.02 0.71 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.41 5.12 6.88 -92.71 -0.64 4.48 16 45 H 0.41 8.15 8.49 -92.71 -0.79 7.36 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 48 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 50 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 51 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 52 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 53 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 54 H 0.08 1.38 8.10 -2.38 -0.02 1.36 16 Total: -1.00 -79.68 427.26 0.00 -79.68 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -1.28 Total: 15.99 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.88 Total: 1.95 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -6.51 Total: -103.76 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.11 Total: -39.51 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -79.68 0.00 -79.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342036940.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.878 kcal (2) G-P(sol) polarization free energy of solvation -79.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds