Wall clock time and date at job start Sat Apr 11 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47384 * 2 1 4 4 N 1.46505 * 109.47044 * 119.99774 * 2 1 3 5 5 C 1.34777 * 120.00115 * 84.99797 * 4 2 1 6 6 O 1.21288 * 119.99593 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00369 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.47120 * 59.99760 * 7 5 4 9 9 C 1.52999 * 109.46961 * 300.00358 * 7 5 4 10 10 C 1.53005 * 109.47159 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47452 * 59.99536 * 10 9 7 12 12 C 1.53002 * 109.46817 * 300.00239 * 11 10 9 13 13 H 1.08992 * 109.47063 * 299.99823 * 12 11 10 14 14 N 1.46499 * 109.46799 * 179.97438 * 12 11 10 15 15 C 1.34778 * 119.99771 * 85.00174 * 14 12 11 16 16 O 1.21582 * 120.00002 * 359.97438 * 15 14 12 17 17 N 1.34779 * 119.99894 * 180.02562 * 15 14 12 18 18 C 1.46504 * 119.99913 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46936 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46833 * 180.02562 * 19 18 17 21 21 C 1.50696 * 109.46904 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99996 * 359.97438 * 21 20 19 23 23 C 1.37880 * 120.00276 * 179.97438 * 21 20 19 24 24 N 1.31519 * 119.99622 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00423 * 179.97438 * 23 21 20 26 26 H 1.48511 * 109.47037 * 59.99912 * 25 23 21 27 27 H 1.48493 * 109.47405 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47154 * 299.99934 * 25 23 21 29 29 C 1.52997 * 109.47466 * 180.02562 * 7 5 4 30 30 H 1.09006 * 109.47005 * 300.00524 * 1 2 3 31 31 H 1.08996 * 109.46969 * 59.99551 * 1 2 3 32 32 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47311 * 239.99399 * 2 1 3 34 34 H 1.09005 * 109.47440 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47399 * 299.99639 * 3 2 1 36 36 H 1.09006 * 109.47477 * 59.99766 * 3 2 1 37 37 H 0.97003 * 120.00244 * 264.99827 * 4 2 1 38 38 H 1.09000 * 109.47486 * 59.99568 * 9 7 5 39 39 H 1.09002 * 109.46716 * 299.99650 * 9 7 5 40 40 H 1.09002 * 109.46935 * 299.99411 * 10 9 7 41 41 H 1.09001 * 109.46812 * 179.97438 * 10 9 7 42 42 H 1.08993 * 109.47194 * 179.97438 * 11 10 9 43 43 H 1.09002 * 109.46695 * 59.99734 * 11 10 9 44 44 H 0.97006 * 120.00568 * 264.99947 * 14 12 11 45 45 H 0.96998 * 119.99934 * 359.97438 * 17 15 14 46 46 H 1.08996 * 109.46978 * 299.99688 * 18 17 15 47 47 H 1.09001 * 109.46981 * 59.99906 * 18 17 15 48 48 H 1.09008 * 109.46584 * 299.99411 * 19 18 17 49 49 H 1.08996 * 109.47211 * 59.99477 * 19 18 17 50 50 H 1.08996 * 109.46849 * 299.99710 * 20 19 18 51 51 H 1.08998 * 109.47328 * 59.99481 * 20 19 18 52 52 H 0.96997 * 119.99910 * 180.02562 * 24 23 21 53 53 H 1.09002 * 109.47153 * 59.99773 * 29 7 5 54 54 H 1.09001 * 109.46832 * 299.99964 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -2.0322 1.1945 6 8 1.8589 -2.6677 0.2025 7 6 2.6487 -2.7427 2.4252 8 1 1.9758 -2.5437 3.2593 9 6 4.0511 -2.2372 2.7696 10 6 4.5609 -2.9590 4.0187 11 6 4.6125 -4.4647 3.7524 12 6 3.2100 -4.9700 3.4080 13 1 2.5373 -4.7715 4.2422 14 7 3.2596 -6.4117 3.1524 15 6 3.1803 -7.2812 4.1791 16 8 3.0682 -6.8691 5.3174 17 7 3.2265 -8.6076 3.9440 18 6 3.1409 -9.5527 5.0601 19 6 3.2161 -10.9836 4.5235 20 6 3.1261 -11.9707 5.6891 21 6 3.1995 -13.3800 5.1605 22 1 3.2999 -13.5543 4.0994 23 6 3.1385 -14.4471 6.0316 24 7 3.0168 -14.2349 7.3239 25 14 3.2289 -16.1940 5.3765 26 1 4.5155 -16.3883 4.6606 27 1 3.1429 -17.1521 6.5078 28 1 2.1008 -16.4305 4.4401 29 6 2.7009 -4.2484 2.1592 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 2.2490 -0.1823 1.9895 38 1 4.0144 -1.1644 2.9590 39 1 4.7240 -2.4362 1.9355 40 1 3.8881 -2.7604 4.8530 41 1 5.5602 -2.5992 4.2638 42 1 4.9761 -4.9788 4.6421 43 1 5.2853 -4.6632 2.9181 44 1 3.3494 -6.7406 2.2442 45 1 3.3163 -8.9363 3.0358 46 1 3.9681 -9.3783 5.7481 47 1 2.1959 -9.4109 5.5846 48 1 2.3885 -11.1577 3.8357 49 1 4.1607 -11.1257 3.9986 50 1 3.9533 -11.7967 6.3771 51 1 2.1812 -11.8284 6.2135 52 1 2.9743 -14.9855 7.9367 53 1 3.3740 -4.4470 1.3252 54 1 1.7019 -4.6088 1.9136 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342036941.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:17 Heat of formation + Delta-G solvation = -138.642324 kcal Electronic energy + Delta-G solvation = -29053.727775 eV Core-core repulsion = 25022.472197 eV Total energy + Delta-G solvation = -4031.255579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55871 -40.89147 -38.91349 -37.00712 -36.85108 -35.27471 -35.12707 -33.11170 -32.66209 -31.58277 -30.24536 -28.27466 -28.09332 -25.19243 -24.93586 -23.32913 -22.37524 -22.27996 -21.75146 -21.38701 -20.81210 -19.14759 -18.58150 -18.26294 -17.29672 -17.00931 -16.77686 -16.51197 -16.35999 -15.80481 -15.69045 -15.43698 -15.26357 -15.17289 -14.86086 -14.77001 -14.32220 -14.16777 -13.78669 -13.72937 -13.67242 -13.43793 -13.39743 -13.07691 -13.02097 -12.71227 -12.54400 -12.40801 -12.39075 -12.26482 -12.20921 -11.91852 -11.73220 -11.66766 -11.65244 -11.56098 -11.48513 -11.27301 -11.10330 -10.71444 -10.53786 -10.31409 -10.08420 -9.74838 -8.18424 -6.30053 1.42084 1.45253 1.53043 1.64771 1.68692 2.15428 2.24599 2.42869 3.15152 3.29071 3.54858 3.73287 3.81673 3.93542 4.07393 4.14546 4.18000 4.20151 4.24354 4.30453 4.33648 4.39800 4.44805 4.47501 4.57071 4.65494 4.74223 4.76743 4.93949 4.95575 4.96571 4.97318 5.03839 5.06844 5.11244 5.12881 5.17618 5.26296 5.27431 5.31926 5.32749 5.42749 5.48110 5.55407 5.58887 5.61395 5.71992 5.85015 6.03174 6.23684 6.59085 6.86794 7.12265 7.29402 7.39384 7.60093 8.93478 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.001476 C = 0.001431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.121523 B =18970.759441 C =19567.890802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.153 4.153 4 N -0.714 5.714 5 C 0.519 3.481 6 O -0.583 6.583 7 C -0.098 4.098 8 H 0.115 0.885 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.130 4.130 12 C 0.167 3.833 13 H 0.069 0.931 14 N -0.731 5.731 15 C 0.699 3.301 16 O -0.637 6.637 17 N -0.733 5.733 18 C 0.151 3.849 19 C -0.101 4.101 20 C 0.024 3.976 21 C -0.543 4.543 22 H 0.066 0.934 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.967 3.033 26 H -0.266 1.266 27 H -0.285 1.285 28 H -0.266 1.266 29 C -0.096 4.096 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.415 0.585 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.409 0.591 45 H 0.411 0.589 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.066 0.934 49 H 0.067 0.933 50 H -0.007 1.007 51 H -0.008 1.008 52 H 0.263 0.737 53 H 0.075 0.925 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 36.548 -16.004 39.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.210 4.210 4 N -0.367 5.367 5 C 0.306 3.694 6 O -0.463 6.463 7 C -0.119 4.119 8 H 0.133 0.867 9 C -0.139 4.139 10 C -0.148 4.148 11 C -0.169 4.169 12 C 0.062 3.938 13 H 0.088 0.912 14 N -0.386 5.386 15 C 0.398 3.602 16 O -0.518 6.518 17 N -0.388 5.388 18 C 0.026 3.974 19 C -0.139 4.139 20 C -0.014 4.014 21 C -0.581 4.581 22 H 0.084 0.916 23 C -0.200 4.200 24 N -0.574 5.574 25 Si 0.792 3.208 26 H -0.190 1.190 27 H -0.211 1.211 28 H -0.191 1.191 29 C -0.134 4.134 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.252 0.748 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.245 0.755 45 H 0.247 0.753 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.011 0.989 51 H 0.011 0.989 52 H 0.072 0.928 53 H 0.094 0.906 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.480 36.403 -15.528 39.579 hybrid contribution -0.011 -1.488 -0.216 1.504 sum 0.469 34.915 -15.744 38.303 Atomic orbital electron populations 1.22163 0.95363 1.01200 1.03241 1.20983 0.94139 0.94108 0.88034 1.22025 1.01896 0.93060 1.04050 1.46074 1.66724 1.06403 1.17468 1.20897 0.76381 0.82805 0.89306 1.90701 1.51817 1.66985 1.36754 1.21267 1.00223 0.94377 0.96078 0.86685 1.21540 0.92914 1.01178 0.98275 1.21460 1.02660 0.92791 0.97852 1.21947 0.96288 0.97305 1.01335 1.20800 0.97477 0.77643 0.97893 0.91237 1.45074 1.78980 1.05921 1.08638 1.16155 0.77606 0.81553 0.84852 1.90876 1.59604 1.78737 1.22629 1.45066 1.78654 1.03780 1.11313 1.21059 1.00333 0.87820 0.88189 1.21595 1.02015 0.91321 0.98952 1.18937 0.95113 0.93629 0.93714 1.21657 1.50180 0.92271 0.94011 0.91588 1.26014 0.94732 1.04201 0.95028 1.70109 1.51206 1.32800 1.03330 0.85470 0.79227 0.78329 0.77820 1.19040 1.21089 1.19093 1.21448 1.02050 0.93516 0.96407 0.91289 0.90586 0.94813 0.91772 0.91582 0.90231 0.90625 0.74769 0.88522 0.91397 0.91183 0.89952 0.93788 0.91083 0.75476 0.75306 0.93487 0.93597 0.91485 0.91390 0.98872 0.98935 0.92817 0.90649 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 71.98 0.68 -0.94 16 2 C 0.13 1.24 3.18 44.99 0.14 1.38 16 3 C -0.15 -0.51 9.38 71.98 0.68 0.16 16 4 N -0.71 -6.24 4.97 -442.54 -2.20 -8.44 16 5 C 0.52 7.78 7.12 87.66 0.62 8.41 16 6 O -0.58 -14.13 15.65 -3.05 -0.05 -14.18 16 7 C -0.10 -1.11 2.53 -11.54 -0.03 -1.14 16 8 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 9 C -0.10 -0.76 5.10 30.60 0.16 -0.61 16 10 C -0.11 -1.17 5.92 30.60 0.18 -0.99 16 11 C -0.13 -2.24 5.49 30.59 0.17 -2.07 16 12 C 0.17 3.23 2.45 44.98 0.11 3.34 16 13 H 0.07 1.64 7.58 -2.39 -0.02 1.62 16 14 N -0.73 -16.04 5.08 -457.90 -2.33 -18.37 16 15 C 0.70 21.72 8.53 179.05 1.53 23.25 16 16 O -0.64 -25.59 16.01 -3.97 -0.06 -25.65 16 17 N -0.73 -21.52 5.56 -478.52 -2.66 -24.18 16 18 C 0.15 5.58 5.67 86.38 0.49 6.07 16 19 C -0.10 -4.00 5.27 30.60 0.16 -3.83 16 20 C 0.02 1.26 4.97 29.85 0.15 1.41 16 21 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 22 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 23 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 24 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 25 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 C -0.10 -1.52 3.95 30.58 0.12 -1.40 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.93 7.58 -2.39 -0.02 0.91 16 34 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.07 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.42 1.04 8.02 -92.71 -0.74 0.29 16 38 H 0.10 0.22 7.56 -2.39 -0.02 0.21 16 39 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.41 6.67 8.62 -92.70 -0.80 5.87 16 45 H 0.41 9.23 8.49 -92.71 -0.79 8.44 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 49 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 50 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 51 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 52 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 53 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 54 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -79.75 431.69 -0.58 -80.33 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -1.44 Total: 18.68 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 5.86 Total: 2.88 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -6.90 Total: -108.28 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.11 Total: -39.83 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -79.75 -0.58 -80.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342036941.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.317 kcal (2) G-P(sol) polarization free energy of solvation -79.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds