Wall clock time and date at job start Sat Apr 11 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47287 * 2 1 4 4 N 1.46506 * 109.47213 * 119.99943 * 2 1 3 5 5 C 1.34777 * 119.99880 * 84.99801 * 4 2 1 6 6 O 1.21284 * 119.99750 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00144 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.46647 * 60.00429 * 7 5 4 9 9 C 1.52997 * 109.47238 * 300.00627 * 7 5 4 10 10 C 1.53006 * 109.47164 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.46626 * 59.99702 * 10 9 7 12 12 C 1.52997 * 109.47592 * 300.00035 * 11 10 9 13 13 H 1.09001 * 109.47375 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.47012 * 300.00038 * 12 11 10 15 15 C 1.34778 * 120.00288 * 274.99862 * 14 12 11 16 16 O 1.21583 * 119.99517 * 0.02562 * 15 14 12 17 17 N 1.34776 * 120.00011 * 180.02562 * 15 14 12 18 18 C 1.46498 * 119.99779 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47080 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47115 * 180.02562 * 19 18 17 21 21 C 1.50696 * 109.46975 * 179.97438 * 20 19 18 22 22 H 1.08007 * 120.00492 * 359.97438 * 21 20 19 23 23 C 1.37883 * 120.00328 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00408 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99372 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47275 * 90.00255 * 25 23 21 27 27 H 1.48505 * 109.47255 * 209.99879 * 25 23 21 28 28 H 1.48500 * 109.47585 * 329.99975 * 25 23 21 29 29 C 1.52996 * 109.47165 * 60.00300 * 12 11 10 30 30 H 1.08999 * 109.47559 * 300.00223 * 1 2 3 31 31 H 1.09002 * 109.46959 * 60.00051 * 1 2 3 32 32 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47311 * 240.00235 * 2 1 3 34 34 H 1.08997 * 109.47450 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47074 * 299.99870 * 3 2 1 36 36 H 1.09002 * 109.46753 * 59.99893 * 3 2 1 37 37 H 0.96999 * 120.00076 * 265.00141 * 4 2 1 38 38 H 1.09001 * 109.46922 * 59.99800 * 9 7 5 39 39 H 1.09000 * 109.47140 * 299.99500 * 9 7 5 40 40 H 1.08993 * 109.46955 * 180.02562 * 10 9 7 41 41 H 1.09000 * 109.47050 * 300.00004 * 10 9 7 42 42 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 43 43 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 44 44 H 0.97007 * 119.99777 * 95.00028 * 14 12 11 45 45 H 0.96997 * 120.00068 * 359.97438 * 17 15 14 46 46 H 1.09001 * 109.46861 * 299.99098 * 18 17 15 47 47 H 1.09003 * 109.47562 * 59.99441 * 18 17 15 48 48 H 1.09001 * 109.46627 * 299.99352 * 19 18 17 49 49 H 1.09003 * 109.47290 * 59.99384 * 19 18 17 50 50 H 1.09001 * 109.46822 * 299.99206 * 20 19 18 51 51 H 1.08996 * 109.47189 * 59.99491 * 20 19 18 52 52 H 0.97003 * 120.00231 * 179.97438 * 24 23 21 53 53 H 1.08992 * 109.47534 * 180.02562 * 29 12 11 54 54 H 1.08996 * 109.47134 * 59.99508 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -2.0322 1.1944 6 8 1.8589 -2.6677 0.2024 7 6 2.6499 -2.7426 2.4246 8 1 1.9776 -2.5437 3.2593 9 6 4.0526 -2.2371 2.7679 10 6 4.5629 -2.9580 4.0173 11 6 4.6141 -4.4639 3.7520 12 6 3.2114 -4.9694 3.4087 13 1 3.2479 -6.0423 3.2202 14 7 2.3078 -4.7016 4.5304 15 6 2.2302 -5.5725 5.5560 16 8 2.9106 -6.5802 5.5506 17 7 1.3986 -5.3264 6.5876 18 6 1.3147 -6.2728 7.7027 19 6 0.3058 -5.7598 8.7323 20 6 0.2186 -6.7478 9.8972 21 6 -0.7746 -6.2422 10.9114 22 1 -1.2917 -5.3092 10.7424 23 6 -1.0233 -6.9707 12.0554 24 7 -1.8897 -6.5292 12.9408 25 14 -0.1295 -8.5847 12.3475 26 1 1.1327 -8.3252 13.0855 27 1 -0.9928 -9.4911 13.1467 28 1 0.1821 -9.2213 11.0425 29 6 2.7011 -4.2486 2.1594 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.2490 -0.1823 1.9895 38 1 4.0159 -1.1643 2.9572 39 1 4.7248 -2.4361 1.9332 40 1 5.5619 -2.5975 4.2621 41 1 3.8906 -2.7587 4.8518 42 1 5.2864 -4.6632 2.9175 43 1 4.9772 -4.9775 4.6422 44 1 1.7653 -3.8974 4.5348 45 1 0.8561 -4.5223 6.5921 46 1 0.9919 -7.2451 7.3305 47 1 2.2940 -6.3700 8.1714 48 1 0.6290 -4.7876 9.1044 49 1 -0.6736 -5.6623 8.2639 50 1 -0.1044 -7.7202 9.5253 51 1 1.1981 -6.8449 10.3653 52 1 -2.0649 -7.0419 13.7454 53 1 1.7017 -4.6083 1.9151 54 1 3.3735 -4.4478 1.3249 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342036944.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:26 Heat of formation + Delta-G solvation = -132.012327 kcal Electronic energy + Delta-G solvation = -29657.528077 eV Core-core repulsion = 25626.559996 eV Total energy + Delta-G solvation = -4030.968081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.71536 -40.82120 -38.98437 -36.99541 -36.84812 -35.13121 -34.77912 -33.29580 -32.69663 -31.59852 -30.56792 -28.61751 -28.09170 -25.07249 -24.72755 -23.45486 -22.37578 -22.19110 -21.99489 -21.38024 -20.12735 -19.48914 -18.89874 -17.98763 -17.34435 -17.05358 -16.84238 -16.49116 -16.28625 -15.77678 -15.72353 -15.49907 -15.28560 -15.08269 -14.95742 -14.75918 -14.70284 -13.92889 -13.79165 -13.68990 -13.58642 -13.46673 -13.24359 -13.15089 -13.06398 -12.91820 -12.71704 -12.67432 -12.36075 -12.26565 -11.91601 -11.90796 -11.77636 -11.76032 -11.57565 -11.44584 -11.31447 -11.23485 -11.21898 -10.74997 -10.67324 -10.29225 -10.07751 -9.71881 -8.28376 -6.31858 1.37536 1.39521 1.51255 1.64327 1.75768 2.18358 2.23975 2.37309 3.07502 3.34757 3.52857 3.68660 3.77672 3.94597 4.05962 4.13728 4.14312 4.21925 4.24993 4.26593 4.33775 4.36242 4.47338 4.53788 4.65282 4.67019 4.74254 4.76869 4.85561 4.92935 4.94033 4.94973 5.04361 5.06223 5.07752 5.10355 5.14814 5.27959 5.28984 5.32772 5.33879 5.40654 5.44705 5.56298 5.58464 5.59286 5.63959 5.67127 6.05219 6.28791 6.59778 6.76052 7.14765 7.30141 7.32929 7.63720 8.87871 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015988 B = 0.001831 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.875599 B =15285.347108 C =16321.718212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.153 4.153 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.583 6.583 7 C -0.100 4.100 8 H 0.114 0.886 9 C -0.101 4.101 10 C -0.110 4.110 11 C -0.131 4.131 12 C 0.168 3.832 13 H 0.066 0.934 14 N -0.724 5.724 15 C 0.699 3.301 16 O -0.638 6.638 17 N -0.733 5.733 18 C 0.147 3.853 19 C -0.098 4.098 20 C -0.013 4.013 21 C -0.529 4.529 22 H 0.039 0.961 23 C 0.005 3.995 24 N -0.950 5.950 25 Si 0.946 3.054 26 H -0.267 1.267 27 H -0.285 1.285 28 H -0.249 1.249 29 C -0.096 4.096 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.415 0.585 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.407 0.593 45 H 0.410 0.590 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.063 0.937 50 H 0.019 0.981 51 H 0.020 0.980 52 H 0.266 0.734 53 H 0.063 0.937 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.960 18.623 -28.439 36.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.211 4.211 4 N -0.366 5.366 5 C 0.305 3.695 6 O -0.463 6.463 7 C -0.122 4.122 8 H 0.131 0.869 9 C -0.138 4.138 10 C -0.147 4.147 11 C -0.170 4.170 12 C 0.063 3.937 13 H 0.084 0.916 14 N -0.381 5.381 15 C 0.399 3.601 16 O -0.519 6.519 17 N -0.389 5.389 18 C 0.023 3.977 19 C -0.136 4.136 20 C -0.051 4.051 21 C -0.567 4.567 22 H 0.057 0.943 23 C -0.192 4.192 24 N -0.591 5.591 25 Si 0.770 3.230 26 H -0.192 1.192 27 H -0.211 1.211 28 H -0.172 1.172 29 C -0.134 4.134 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.252 0.748 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.244 0.756 45 H 0.246 0.754 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.038 0.962 51 H 0.038 0.962 52 H 0.075 0.925 53 H 0.082 0.918 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.286 17.250 -29.010 36.272 hybrid contribution -0.578 -0.099 0.947 1.114 sum 12.708 17.152 -28.062 35.259 Atomic orbital electron populations 1.22158 0.95359 1.01229 1.03205 1.20977 0.94124 0.94060 0.88095 1.22024 1.01870 0.93150 1.04013 1.46085 1.66677 1.06479 1.17405 1.20951 0.76383 0.82737 0.89426 1.90703 1.51823 1.66983 1.36792 1.21334 0.99956 0.95056 0.95826 0.86860 1.21520 0.93030 1.00987 0.98305 1.21438 1.02196 0.93457 0.97639 1.21929 0.95999 0.97270 1.01778 1.20760 0.89065 0.99525 0.84349 0.91579 1.45071 1.47082 1.25343 1.20604 1.16149 0.80297 0.83111 0.80545 1.90886 1.49711 1.30329 1.81000 1.45038 1.45627 1.27355 1.20864 1.21112 0.99169 0.91759 0.85689 1.21466 0.98055 0.99537 0.94569 1.19471 0.95818 0.95949 0.93859 1.21466 1.23473 1.07493 1.04291 0.94305 1.25969 0.95785 1.01784 0.95684 1.70052 1.36605 1.41041 1.11353 0.85718 0.78663 0.79375 0.79274 1.19213 1.21080 1.17249 1.21509 1.02462 0.93272 0.96202 0.91330 0.90680 0.94722 0.91750 0.91600 0.90267 0.90709 0.74812 0.88891 0.91393 0.90603 0.91541 0.90085 0.93574 0.75576 0.75372 0.93070 0.92711 0.91534 0.91806 0.96229 0.96172 0.92544 0.91774 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 71.98 0.68 -0.98 16 2 C 0.13 1.25 3.18 44.99 0.14 1.39 16 3 C -0.15 -0.57 9.38 71.98 0.68 0.10 16 4 N -0.71 -6.02 4.97 -442.52 -2.20 -8.22 16 5 C 0.52 7.37 7.12 87.66 0.62 8.00 16 6 O -0.58 -13.85 15.65 -3.04 -0.05 -13.89 16 7 C -0.10 -0.99 2.35 -11.54 -0.03 -1.02 16 8 H 0.11 0.71 6.50 -2.39 -0.02 0.69 16 9 C -0.10 -0.69 5.10 30.60 0.16 -0.53 16 10 C -0.11 -1.09 5.77 30.60 0.18 -0.92 16 11 C -0.13 -2.05 5.60 30.59 0.17 -1.88 16 12 C 0.17 3.00 2.78 44.99 0.13 3.12 16 13 H 0.07 1.56 7.58 -2.39 -0.02 1.54 16 14 N -0.72 -13.19 4.24 -457.83 -1.94 -15.13 16 15 C 0.70 19.20 8.53 179.05 1.53 20.73 16 16 O -0.64 -23.65 16.00 -3.98 -0.06 -23.71 16 17 N -0.73 -18.62 5.56 -478.53 -2.66 -21.28 16 18 C 0.15 4.70 5.67 86.38 0.49 5.19 16 19 C -0.10 -3.50 5.27 30.60 0.16 -3.34 16 20 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 21 C -0.53 -29.91 9.66 25.60 0.25 -29.67 16 22 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 23 C 0.00 0.27 5.47 84.66 0.46 0.73 16 24 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 25 Si 0.95 44.48 27.47 68.60 1.88 46.37 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 28 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 29 C -0.10 -1.42 4.18 30.59 0.13 -1.30 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.93 7.58 -2.39 -0.02 0.91 16 34 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.41 0.99 8.02 -92.71 -0.74 0.25 16 38 H 0.09 0.21 7.56 -2.39 -0.02 0.19 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.69 7.60 -2.39 -0.02 0.67 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.41 4.83 6.88 -92.70 -0.64 4.19 16 45 H 0.41 7.73 8.49 -92.71 -0.79 6.95 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 49 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 50 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 51 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 52 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 53 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 54 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -79.49 423.66 -0.19 -79.68 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -1.33 Total: 15.89 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 5.86 Total: -0.83 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -6.50 Total: -103.51 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.11 Total: -37.60 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -79.49 -0.19 -79.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342036944.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.331 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds