Wall clock time and date at job start Sat Apr 11 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47129 * 2 1 4 4 N 1.46898 * 109.46797 * 179.97438 * 3 2 1 5 5 C 1.46900 * 111.00363 * 293.95254 * 4 3 2 6 6 C 1.46903 * 110.99740 * 169.99936 * 4 3 2 7 7 C 1.52998 * 109.47331 * 287.89857 * 6 4 3 8 8 H 1.09001 * 110.88769 * 60.59492 * 7 6 4 9 9 C 1.55152 * 111.00943 * 184.51485 * 7 6 4 10 10 C 1.54335 * 103.02423 * 153.38005 * 9 7 6 11 11 N 1.47015 * 107.26297 * 338.14615 * 10 9 7 12 12 C 1.34780 * 125.64917 * 178.85118 * 11 10 9 13 13 O 1.21343 * 120.00516 * 179.69323 * 12 11 10 14 14 C 1.49448 * 119.99386 * 359.68606 * 12 11 10 15 15 O 1.21344 * 120.00494 * 0.02562 * 14 12 11 16 16 N 1.34784 * 119.99513 * 179.72650 * 14 12 11 17 17 C 1.46499 * 119.99565 * 180.27283 * 16 14 12 18 18 C 1.53001 * 109.46907 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47413 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47217 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00545 * 359.97438 * 20 19 18 22 22 C 1.37883 * 120.00006 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99700 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00071 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47296 * 89.99674 * 24 22 20 26 26 H 1.48495 * 109.46842 * 209.99466 * 24 22 20 27 27 H 1.48497 * 109.46878 * 329.99700 * 24 22 20 28 28 C 1.47423 * 108.70672 * 358.57933 * 11 10 9 29 29 H 1.09005 * 109.46918 * 300.00253 * 1 2 3 30 30 H 1.08998 * 109.46971 * 60.00194 * 1 2 3 31 31 H 1.08999 * 109.47014 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47490 * 240.00179 * 2 1 3 33 33 H 1.08998 * 109.46971 * 119.99806 * 2 1 3 34 34 H 1.08998 * 109.47079 * 60.00194 * 3 2 1 35 35 H 1.08998 * 109.47036 * 299.99767 * 3 2 1 36 36 H 1.09003 * 109.46976 * 302.16024 * 5 4 3 37 37 H 1.08995 * 109.46859 * 62.15973 * 5 4 3 38 38 H 1.08994 * 109.46984 * 182.16381 * 5 4 3 39 39 H 1.09003 * 109.47076 * 167.89863 * 6 4 3 40 40 H 1.09002 * 109.46782 * 47.90043 * 6 4 3 41 41 H 1.09001 * 110.72079 * 271.94428 * 9 7 6 42 42 H 1.09010 * 110.71935 * 35.21218 * 9 7 6 43 43 H 1.09002 * 109.99182 * 218.66619 * 10 9 7 44 44 H 1.09001 * 109.77579 * 97.49768 * 10 9 7 45 45 H 0.97000 * 120.00342 * 0.28007 * 16 14 12 46 46 H 1.08995 * 109.48028 * 300.00296 * 17 16 14 47 47 H 1.09005 * 109.47332 * 60.00619 * 17 16 14 48 48 H 1.09000 * 109.47431 * 300.00314 * 18 17 16 49 49 H 1.09005 * 109.46877 * 60.00648 * 18 17 16 50 50 H 1.09000 * 109.47043 * 300.00507 * 19 18 17 51 51 H 1.09005 * 109.46606 * 60.00438 * 19 18 17 52 52 H 0.97003 * 119.99910 * 180.02562 * 23 22 20 53 53 H 1.09001 * 110.36496 * 143.19382 * 28 11 10 54 54 H 1.09000 * 110.37296 * 265.41313 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0350 0.8859 1.2542 6 6 4.0356 2.7930 -0.2375 7 6 3.8051 3.1798 -1.6998 8 1 2.7416 3.1806 -1.9386 9 6 4.4485 4.5550 -2.0194 10 6 4.7355 4.4613 -3.5330 11 7 4.7910 3.0336 -3.8789 12 6 4.9995 2.5317 -5.1123 13 8 5.0312 1.3305 -5.2813 14 6 5.1915 3.4548 -6.2719 15 8 5.1602 4.6560 -6.1029 16 7 5.4055 2.9529 -7.5044 17 6 5.5996 3.8578 -8.6400 18 6 5.8219 3.0383 -9.9128 19 6 6.0253 3.9833 -11.0988 20 6 6.2436 3.1761 -12.3525 21 1 6.2383 2.0971 -12.3079 22 6 6.4513 3.8152 -13.5565 23 7 6.4583 5.1292 -13.6108 24 14 6.7212 2.8146 -15.1107 25 1 5.4132 2.5480 -15.7612 26 1 7.5920 3.5742 -16.0433 27 1 7.3728 1.5264 -14.7631 28 6 4.5875 2.2416 -2.6523 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.6542 1.4638 2.0963 37 1 3.7171 -0.1521 1.3525 38 1 5.1239 0.9330 1.2440 39 1 5.1038 2.8099 -0.0213 40 1 3.5223 3.5027 0.4113 41 1 3.7518 5.3657 -1.8060 42 1 5.3762 4.6857 -1.4621 43 1 5.6900 4.9356 -3.7613 44 1 3.9349 4.9471 -4.0909 45 1 5.4308 1.9927 -7.6394 46 1 4.7160 4.4845 -8.7606 47 1 6.4700 4.4882 -8.4577 48 1 6.7058 2.4120 -9.7920 49 1 4.9518 2.4077 -10.0954 50 1 5.1417 4.6100 -11.2198 51 1 6.8956 4.6136 -10.9160 52 1 6.6040 5.5789 -14.4579 53 1 4.0019 1.3484 -2.8703 54 1 5.5471 1.9676 -2.2138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343140528.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:33 Heat of formation + Delta-G solvation = -104.688594 kcal Electronic energy + Delta-G solvation = -29163.929663 eV Core-core repulsion = 25134.146429 eV Total energy + Delta-G solvation = -4029.783235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.88913 -40.20755 -39.22031 -38.12525 -37.07099 -35.26219 -34.40147 -33.08446 -32.86424 -30.37922 -29.10453 -28.03292 -27.69220 -26.04069 -24.86680 -23.41070 -22.99599 -22.37566 -21.92271 -20.97191 -20.73282 -18.90215 -18.46576 -18.05937 -17.58579 -16.88852 -16.75918 -16.62495 -16.40417 -16.32248 -15.99081 -15.51411 -15.39121 -14.97340 -14.78298 -14.57467 -14.29642 -14.07338 -13.91593 -13.84275 -13.78138 -13.50365 -13.40032 -13.10403 -12.97019 -12.76185 -12.72818 -12.64202 -12.54378 -12.40723 -12.26031 -12.08428 -11.93889 -11.71397 -11.69800 -11.59087 -11.55330 -11.28074 -11.23419 -10.64372 -10.54758 -10.32487 -9.85625 -9.22949 -8.19515 -6.30424 0.28917 1.20264 1.42113 1.42946 1.54139 2.07024 2.39590 2.45890 2.91051 3.14318 3.26599 3.58921 3.67491 3.80217 4.03339 4.07523 4.15007 4.17243 4.26892 4.32418 4.43995 4.47199 4.51648 4.52458 4.58859 4.67535 4.69713 4.75179 4.79799 4.84634 4.87505 4.90758 4.91133 4.93770 4.96850 5.04170 5.10821 5.13838 5.15265 5.22735 5.23438 5.31670 5.34794 5.42662 5.51242 5.70276 5.84075 5.96068 6.14856 6.16191 6.19573 6.24056 6.60392 6.86120 6.88348 7.38849 8.92287 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.001594 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.486898 B =17564.072455 C =18247.046404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.055 3.945 4 N -0.558 5.558 5 C 0.024 3.976 6 C 0.071 3.929 7 C -0.086 4.086 8 H 0.084 0.916 9 C -0.117 4.117 10 C 0.102 3.898 11 N -0.591 5.591 12 C 0.519 3.481 13 O -0.547 6.547 14 C 0.503 3.497 15 O -0.538 6.538 16 N -0.688 5.688 17 C 0.129 3.871 18 C -0.106 4.106 19 C 0.025 3.975 20 C -0.544 4.544 21 H 0.063 0.937 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.966 3.034 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.263 1.263 28 C 0.122 3.878 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.418 0.582 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.066 0.934 50 H -0.003 1.003 51 H -0.003 1.003 52 H 0.263 0.737 53 H 0.069 0.931 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.342 -5.780 35.955 37.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.073 4.073 4 N -0.282 5.282 5 C -0.124 4.124 6 C -0.057 4.057 7 C -0.106 4.106 8 H 0.102 0.898 9 C -0.155 4.155 10 C -0.020 4.020 11 N -0.324 5.324 12 C 0.302 3.698 13 O -0.426 6.426 14 C 0.283 3.717 15 O -0.416 6.416 16 N -0.341 5.341 17 C 0.007 3.993 18 C -0.144 4.144 19 C -0.013 4.013 20 C -0.582 4.582 21 H 0.082 0.918 22 C -0.198 4.198 23 N -0.572 5.572 24 Si 0.790 3.210 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.187 1.187 28 C 0.001 3.999 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.255 0.745 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.015 0.985 51 H 0.016 0.984 52 H 0.072 0.928 53 H 0.088 0.912 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.144 -5.741 35.416 36.791 hybrid contribution -0.063 -0.089 -0.765 0.772 sum -8.207 -5.830 34.651 36.084 Atomic orbital electron populations 1.21727 0.95159 1.02041 1.01899 1.21502 0.95806 0.96293 1.02128 1.22211 0.86939 0.97323 1.00838 1.61960 1.08063 1.22451 1.35743 1.22420 1.00675 1.00203 0.89059 1.22038 1.01163 0.88860 0.93649 1.22328 0.99816 0.93941 0.94478 0.89763 1.22770 1.02901 0.97434 0.92385 1.22326 1.02807 0.79520 0.97344 1.48460 1.67186 1.10363 1.06364 1.19745 0.78727 0.87637 0.83682 1.90747 1.51452 1.15753 1.84612 1.20196 0.78526 0.88331 0.84632 1.90725 1.50307 1.15670 1.84865 1.45889 1.69404 1.12194 1.06582 1.21466 1.01445 0.92351 0.84081 1.21647 1.01859 0.98466 0.92453 1.18933 0.95386 0.94522 0.92413 1.21681 1.48931 0.93748 0.93827 0.91844 1.25975 0.94993 0.96007 1.02873 1.70099 1.50866 1.09226 1.27018 0.85438 0.78268 0.78725 0.78553 1.19855 1.20869 1.18731 1.22365 1.00673 0.94755 0.82090 0.92281 0.92936 0.92358 0.92539 0.91688 0.94354 0.91094 0.95148 0.91190 0.90936 0.89444 0.92690 0.87689 0.88648 0.90986 0.91208 0.74515 0.91707 0.91697 0.91547 0.91538 0.98472 0.98449 0.92787 0.91231 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.27 5.86 30.60 0.18 -1.09 16 3 C 0.05 0.56 4.81 86.31 0.41 0.97 16 4 N -0.56 -5.86 4.46 -922.45 -4.12 -9.98 16 5 C 0.02 0.20 9.27 127.69 1.18 1.38 16 6 C 0.07 0.58 4.44 86.30 0.38 0.96 16 7 C -0.09 -0.95 2.99 -9.40 -0.03 -0.97 16 8 H 0.08 1.00 6.72 -2.39 -0.02 0.98 16 9 C -0.12 -1.12 6.42 31.78 0.20 -0.92 16 10 C 0.10 1.86 5.49 86.73 0.48 2.34 16 11 N -0.59 -13.43 3.33 -813.36 -2.70 -16.13 16 12 C 0.52 15.06 7.91 87.27 0.69 15.75 16 13 O -0.55 -18.01 16.73 -3.23 -0.05 -18.07 16 14 C 0.50 15.74 7.86 87.27 0.69 16.42 16 15 O -0.54 -18.35 14.12 -3.23 -0.05 -18.39 16 16 N -0.69 -21.36 5.55 -464.41 -2.58 -23.94 16 17 C 0.13 4.54 5.67 86.38 0.49 5.03 16 18 C -0.11 -4.19 5.27 30.60 0.16 -4.03 16 19 C 0.03 1.30 4.97 29.85 0.15 1.45 16 20 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 21 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 22 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 23 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 24 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 28 C 0.12 2.16 6.13 86.86 0.53 2.69 16 29 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.63 6.60 -2.39 -0.02 0.62 16 34 H 0.04 0.35 8.11 -2.39 -0.02 0.33 16 35 H 0.07 0.79 6.46 -2.39 -0.02 0.77 16 36 H 0.03 0.21 8.12 -2.39 -0.02 0.20 16 37 H 0.07 0.59 6.57 -2.39 -0.02 0.57 16 38 H 0.07 0.53 7.95 -2.39 -0.02 0.51 16 39 H 0.09 0.60 7.86 -2.39 -0.02 0.58 16 40 H 0.05 0.35 8.05 -2.39 -0.02 0.33 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.66 8.04 -2.38 -0.02 0.64 16 43 H 0.07 1.45 7.71 -2.39 -0.02 1.43 16 44 H 0.07 1.43 7.57 -2.39 -0.02 1.42 16 45 H 0.42 11.88 7.94 -92.71 -0.74 11.14 16 46 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 47 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 50 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 51 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 52 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 53 H 0.07 1.48 8.04 -2.39 -0.02 1.47 16 54 H 0.08 1.31 8.04 -2.39 -0.02 1.30 16 Total: -1.00 -69.27 429.30 -0.13 -69.40 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.12 Total: 17.90 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.93 Total: 9.34 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -9.11 Total: -106.38 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.10 Total: -36.46 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.27 -0.13 -69.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343140528.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.286 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds