Wall clock time and date at job start Sat Apr 11 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47285 * 2 1 4 4 N 1.46505 * 109.47148 * 119.99777 * 2 1 3 5 5 C 1.34776 * 119.99811 * 154.99860 * 4 2 1 6 6 O 1.21277 * 120.00138 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99804 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.47120 * 60.00295 * 7 5 4 9 9 C 1.52993 * 109.47029 * 300.00196 * 7 5 4 10 10 C 1.53008 * 109.46733 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.47409 * 60.00092 * 10 9 7 12 12 C 1.53002 * 109.46972 * 300.00085 * 11 10 9 13 13 H 1.09002 * 109.47070 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.46799 * 300.00013 * 12 11 10 15 15 C 1.34778 * 119.99771 * 274.99826 * 14 12 11 16 16 O 1.21279 * 120.00041 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99935 * 180.02562 * 15 14 12 18 18 H 1.09000 * 109.47310 * 320.00000 * 17 15 14 19 19 N 1.46900 * 109.46905 * 200.00100 * 17 15 14 20 20 C 1.52997 * 109.47380 * 79.99961 * 17 15 14 21 21 C 1.52993 * 109.47418 * 184.99872 * 20 17 15 22 22 C 1.50698 * 109.47111 * 180.02562 * 21 20 17 23 23 H 1.07998 * 120.00596 * 359.97438 * 22 21 20 24 24 C 1.37882 * 120.00134 * 180.02562 * 22 21 20 25 25 N 1.31522 * 119.99747 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00438 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46960 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47273 * 119.99669 * 26 24 22 29 29 H 1.48496 * 109.47160 * 240.00091 * 26 24 22 30 30 C 1.52996 * 109.46990 * 179.97438 * 7 5 4 31 31 H 1.09007 * 109.47091 * 299.99893 * 1 2 3 32 32 H 1.08996 * 109.47449 * 60.00247 * 1 2 3 33 33 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47030 * 239.99567 * 2 1 3 35 35 H 1.08997 * 109.47673 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.46955 * 300.00089 * 3 2 1 37 37 H 1.09005 * 109.47440 * 59.99818 * 3 2 1 38 38 H 0.96999 * 119.99692 * 335.00116 * 4 2 1 39 39 H 1.09002 * 109.47722 * 60.00092 * 9 7 5 40 40 H 1.09004 * 109.46998 * 299.99564 * 9 7 5 41 41 H 1.09004 * 109.46943 * 299.99499 * 10 9 7 42 42 H 1.09001 * 109.46630 * 179.97438 * 10 9 7 43 43 H 1.08996 * 109.47452 * 179.97438 * 11 10 9 44 44 H 1.09000 * 109.47054 * 59.99785 * 11 10 9 45 45 H 0.96998 * 120.00630 * 95.00428 * 14 12 11 46 46 H 1.00899 * 111.00123 * 299.99721 * 19 17 15 47 47 H 1.00902 * 111.00043 * 63.95695 * 19 17 15 48 48 H 1.08995 * 109.47184 * 305.00449 * 20 17 15 49 49 H 1.09005 * 109.46769 * 64.99723 * 20 17 15 50 50 H 1.08995 * 109.47414 * 300.00435 * 21 20 17 51 51 H 1.09005 * 109.47272 * 60.00159 * 21 20 17 52 52 H 0.97000 * 119.99789 * 180.02562 * 25 24 22 53 53 H 1.09004 * 109.47368 * 60.00232 * 30 7 5 54 54 H 1.09001 * 109.47372 * 300.00388 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1944 6 8 3.9354 -1.1995 0.2024 7 6 3.7429 -1.9690 2.4251 8 1 3.0704 -2.7910 2.6705 9 6 3.7946 -0.9854 3.5958 10 6 4.3054 -1.7060 4.8451 11 6 5.7081 -2.2561 4.5789 12 6 5.6564 -3.2397 3.4081 13 1 6.6557 -3.6313 3.2182 14 7 4.7529 -4.3447 3.7382 15 6 5.2093 -5.4022 4.4382 16 8 6.3678 -5.4387 4.7952 17 6 4.2801 -6.5391 4.7773 18 1 3.3038 -6.1406 5.0531 19 7 4.8327 -7.3039 5.9033 20 6 4.1317 -7.4564 3.5618 21 6 3.0939 -8.5392 3.8637 22 6 2.9482 -9.4430 2.6667 23 1 3.5366 -9.2629 1.7791 24 6 2.0628 -10.4994 2.7041 25 7 1.3459 -10.7185 3.7847 26 14 1.8827 -11.6202 1.2206 27 1 2.7946 -11.1632 0.1414 28 1 2.2296 -13.0116 1.6064 29 1 0.4802 -11.5763 0.7345 30 6 5.1451 -2.5202 2.1590 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.4622 -0.7386 1.9895 39 1 2.7954 -0.5931 3.7853 40 1 4.4671 -0.1635 3.3503 41 1 3.6332 -2.5282 5.0907 42 1 4.3427 -1.0051 5.6791 43 1 6.0722 -2.7691 5.4691 44 1 6.3802 -1.4340 4.3333 45 1 3.8263 -4.3154 3.4530 46 1 5.7383 -7.6841 5.6724 47 1 4.8802 -6.7370 6.7367 48 1 3.8062 -6.8706 2.7022 49 1 5.0910 -7.9242 3.3404 50 1 3.4194 -9.1250 4.7233 51 1 2.1345 -8.0714 4.0852 52 1 0.7233 -11.4619 3.8112 53 1 5.8179 -1.6985 1.9133 54 1 5.1079 -3.2210 1.3250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424113962.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:15 Heat of formation + Delta-G solvation = -140.723538 kcal Electronic energy + Delta-G solvation = -30579.834799 eV Core-core repulsion = 26548.488972 eV Total energy + Delta-G solvation = -4031.345827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75042 -40.82776 -38.96251 -36.94805 -36.72517 -34.84720 -34.79495 -32.84738 -31.90934 -31.64551 -30.73787 -28.09559 -28.03776 -25.56514 -25.02463 -23.50322 -22.57977 -22.16007 -21.40307 -21.33040 -20.12187 -18.88275 -18.27586 -17.78144 -17.40001 -17.09700 -16.75198 -16.43777 -16.37852 -15.94499 -15.78008 -15.47364 -15.20030 -15.02541 -14.84424 -14.56037 -14.28476 -13.98960 -13.80784 -13.70515 -13.46721 -13.38515 -13.29523 -13.19616 -13.05665 -12.95987 -12.82367 -12.50814 -12.38330 -12.29453 -12.22253 -11.92562 -11.82398 -11.73686 -11.61208 -11.47720 -11.27640 -11.22296 -10.96161 -10.68882 -10.48708 -10.09753 -10.05527 -9.57981 -8.13886 -6.23494 1.40686 1.42013 1.53760 1.57137 1.62944 2.17595 2.23753 2.44615 3.19191 3.48611 3.61021 3.65065 3.73972 3.86105 3.93882 4.04665 4.12377 4.14508 4.18864 4.23419 4.32791 4.33027 4.35502 4.43563 4.61803 4.64226 4.74232 4.76229 4.79509 4.83853 4.93148 4.95686 5.03931 5.04435 5.06645 5.11272 5.24275 5.26153 5.27347 5.29183 5.32622 5.37603 5.55710 5.57936 5.58349 5.86140 5.99953 6.13030 6.31656 6.48460 6.57268 6.57863 6.95381 7.19987 7.27959 7.44474 8.97393 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008905 B = 0.002811 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3143.612497 B = 9958.656347 C =12258.566662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.130 3.870 3 C -0.157 4.157 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.584 6.584 7 C -0.103 4.103 8 H 0.110 0.890 9 C -0.100 4.100 10 C -0.111 4.111 11 C -0.126 4.126 12 C 0.147 3.853 13 H 0.066 0.934 14 N -0.708 5.708 15 C 0.491 3.509 16 O -0.582 6.582 17 C 0.086 3.914 18 H 0.112 0.888 19 N -0.819 5.819 20 C -0.083 4.083 21 C 0.040 3.960 22 C -0.542 4.542 23 H 0.053 0.947 24 C 0.003 3.997 25 N -0.928 5.928 26 Si 0.957 3.043 27 H -0.267 1.267 28 H -0.281 1.281 29 H -0.276 1.276 30 C -0.098 4.098 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.415 0.585 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.409 0.591 46 H 0.344 0.656 47 H 0.347 0.653 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.006 0.994 51 H -0.003 1.003 52 H 0.262 0.738 53 H 0.083 0.917 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 28.911 -0.721 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.367 5.367 5 C 0.305 3.695 6 O -0.464 6.464 7 C -0.125 4.125 8 H 0.127 0.873 9 C -0.138 4.138 10 C -0.149 4.149 11 C -0.165 4.165 12 C 0.042 3.958 13 H 0.084 0.916 14 N -0.360 5.360 15 C 0.276 3.724 16 O -0.462 6.462 17 C -0.030 4.030 18 H 0.130 0.870 19 N -0.348 5.348 20 C -0.121 4.121 21 C 0.003 3.997 22 C -0.581 4.581 23 H 0.071 0.929 24 C -0.195 4.195 25 N -0.569 5.569 26 Si 0.782 3.218 27 H -0.191 1.191 28 H -0.207 1.207 29 H -0.202 1.202 30 C -0.136 4.136 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.252 0.748 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.246 0.754 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.024 0.976 51 H 0.015 0.985 52 H 0.071 0.929 53 H 0.101 0.899 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.611 28.358 -1.206 28.390 hybrid contribution 0.242 -0.370 -0.609 0.753 sum -0.369 27.988 -1.815 28.050 Atomic orbital electron populations 1.22035 0.91968 1.02995 1.04182 1.20996 0.95570 0.92931 0.87939 1.22125 1.00451 0.95626 1.03339 1.46082 1.17275 1.55882 1.17414 1.20936 0.81410 0.77867 0.89282 1.90695 1.57623 1.61258 1.36810 1.21351 0.97968 0.99658 0.93496 0.87256 1.21519 1.03315 0.96733 0.92194 1.21468 0.95383 1.00306 0.97703 1.21879 0.98975 0.98338 0.97284 1.20936 0.93613 0.86455 0.94771 0.91606 1.46161 1.14854 1.19376 1.55657 1.22307 0.89089 0.84042 0.76952 1.90635 1.19790 1.80585 1.55152 1.21627 0.97548 0.90248 0.93552 0.86987 1.58972 1.32273 1.38459 1.05076 1.21387 0.99421 0.96584 0.94712 1.18819 0.92754 0.92757 0.95360 1.21759 1.22266 1.12859 1.01176 0.92920 1.25863 0.95574 0.99228 0.98812 1.70105 1.26374 1.30965 1.29421 0.85525 0.78092 0.78557 0.79614 1.19073 1.20669 1.20171 1.21500 0.96003 1.00208 0.95929 0.90350 0.90107 0.92208 0.92188 0.94535 0.90644 0.90961 0.74810 0.88838 0.91269 0.91518 0.90051 0.93108 0.90023 0.75370 0.84264 0.84008 0.91666 0.94237 0.97570 0.98496 0.92919 0.89891 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.38 71.98 0.68 -0.51 16 2 C 0.13 1.69 3.18 44.99 0.14 1.83 16 3 C -0.16 -1.84 9.48 71.98 0.68 -1.15 16 4 N -0.71 -8.83 4.97 -442.53 -2.20 -11.03 16 5 C 0.52 9.56 7.12 87.66 0.62 10.19 16 6 O -0.58 -16.30 15.64 -3.02 -0.05 -16.35 16 7 C -0.10 -1.46 2.35 -11.54 -0.03 -1.49 16 8 H 0.11 1.29 6.51 -2.39 -0.02 1.28 16 9 C -0.10 -0.95 5.10 30.59 0.16 -0.79 16 10 C -0.11 -1.27 5.77 30.60 0.18 -1.10 16 11 C -0.13 -2.11 5.60 30.59 0.17 -1.94 16 12 C 0.15 3.03 2.78 44.98 0.13 3.15 16 13 H 0.07 1.71 7.58 -2.39 -0.02 1.69 16 14 N -0.71 -15.73 4.23 -442.61 -1.87 -17.60 16 15 C 0.49 14.46 7.03 87.66 0.62 15.07 16 16 O -0.58 -20.69 15.91 -3.03 -0.05 -20.74 16 17 C 0.09 2.75 3.15 44.17 0.14 2.89 16 18 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 19 N -0.82 -27.16 8.44 -171.80 -1.45 -28.61 16 20 C -0.08 -3.31 4.78 30.59 0.15 -3.16 16 21 C 0.04 2.08 4.86 29.85 0.15 2.22 16 22 C -0.54 -30.86 9.11 25.60 0.23 -30.62 16 23 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 24 C 0.00 0.18 5.46 84.65 0.46 0.64 16 25 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 26 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 29 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 30 C -0.10 -1.86 4.17 30.58 0.13 -1.73 16 31 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 1.13 7.58 -2.38 -0.02 1.11 16 35 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 37 H 0.07 0.61 8.14 -2.38 -0.02 0.60 16 38 H 0.41 2.60 8.02 -92.71 -0.74 1.85 16 39 H 0.09 0.46 7.57 -2.39 -0.02 0.44 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.81 7.60 -2.39 -0.02 0.79 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 45 H 0.41 7.48 6.87 -92.71 -0.64 6.84 16 46 H 0.34 11.87 8.58 -89.70 -0.77 11.10 16 47 H 0.35 9.74 9.06 -89.69 -0.81 8.93 16 48 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.01 0.33 7.75 -2.39 -0.02 0.32 16 51 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 52 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 53 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 54 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -76.32 426.04 -0.76 -77.08 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -2.05 Total: 33.09 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 4.60 Total: -6.50 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -5.24 Total: -113.25 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.10 Total: -37.09 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.32 -0.76 -77.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424113962.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.642 kcal (2) G-P(sol) polarization free energy of solvation -76.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds