Wall clock time and date at job start Sat Apr 11 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 N 1.46508 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00029 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00317 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99715 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.49874 * 60.06577 * 7 5 4 9 9 C 1.53037 * 109.49663 * 180.16176 * 7 5 4 10 10 C 1.53039 * 109.53740 * 181.31850 * 9 7 5 11 11 C 1.53628 * 109.24175 * 298.50680 * 10 9 7 12 12 N 1.46925 * 108.54046 * 54.86111 * 11 10 9 13 13 C 1.34769 * 120.63456 * 126.36706 * 12 11 10 14 14 O 1.21582 * 120.00415 * 184.94375 * 13 12 11 15 15 N 1.34782 * 119.99860 * 4.94456 * 13 12 11 16 16 C 1.46495 * 120.00211 * 175.01750 * 15 13 12 17 17 C 1.53002 * 109.47179 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47160 * 59.99442 * 17 16 15 19 19 C 1.53001 * 109.46914 * 299.99551 * 17 16 15 20 20 C 1.50705 * 109.47175 * 179.97438 * 17 16 15 21 21 H 1.08000 * 119.99831 * 359.97438 * 20 17 16 22 22 C 1.37877 * 119.99857 * 180.02562 * 20 17 16 23 23 N 1.31512 * 119.99939 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 119.99803 * 179.97438 * 22 20 17 25 25 H 1.48504 * 109.46950 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47080 * 119.99387 * 24 22 20 27 27 H 1.48493 * 109.47227 * 239.99814 * 24 22 20 28 28 C 1.46932 * 118.73666 * 306.09313 * 12 11 10 29 29 H 1.09003 * 109.47617 * 59.99932 * 1 2 3 30 30 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47163 * 299.99556 * 1 2 3 32 32 H 1.09005 * 109.47163 * 240.00444 * 2 1 3 33 33 H 1.08997 * 109.47567 * 120.00493 * 2 1 3 34 34 H 1.09001 * 109.47226 * 60.00357 * 3 2 1 35 35 H 1.08999 * 109.47083 * 299.99719 * 3 2 1 36 36 H 0.96999 * 119.99537 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.45895 * 301.33624 * 9 7 5 38 38 H 1.08995 * 109.46160 * 61.30725 * 9 7 5 39 39 H 1.09004 * 109.50351 * 58.58713 * 10 9 7 40 40 H 1.09006 * 109.49727 * 178.68429 * 10 9 7 41 41 H 1.09000 * 109.73857 * 295.11854 * 11 10 9 42 42 H 1.08998 * 109.66416 * 174.55004 * 11 10 9 43 43 H 0.97002 * 119.99635 * 355.00871 * 15 13 12 44 44 H 1.08995 * 109.47417 * 59.99385 * 16 15 13 45 45 H 1.09005 * 109.46783 * 299.99140 * 16 15 13 46 46 H 1.08997 * 109.46946 * 179.97438 * 18 17 16 47 47 H 1.08991 * 109.47314 * 300.00467 * 18 17 16 48 48 H 1.09000 * 109.46834 * 60.00101 * 18 17 16 49 49 H 1.08995 * 109.47196 * 300.00008 * 19 17 16 50 50 H 1.09001 * 109.47290 * 60.00264 * 19 17 16 51 51 H 1.09002 * 109.46652 * 179.97438 * 19 17 16 52 52 H 0.97006 * 119.99572 * 180.02562 * 23 22 20 53 53 H 1.08995 * 109.58587 * 173.64977 * 28 12 11 54 54 H 1.09005 * 109.58536 * 293.93240 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0002 6 8 3.5724 3.6601 0.0002 7 6 5.6858 2.6097 -0.0003 8 1 6.0496 2.0973 -0.8909 9 6 6.1966 4.0523 0.0043 10 6 7.7266 4.0536 -0.0289 11 6 8.2609 3.3479 1.2268 12 7 7.6605 2.0090 1.3014 13 6 8.4369 0.9139 1.4204 14 8 7.9353 -0.1932 1.3908 15 7 9.7697 1.0460 1.5722 16 6 10.6005 -0.1368 1.8108 17 6 12.0645 0.2871 1.9452 18 6 12.2088 1.2571 3.1195 19 6 12.5164 0.9761 0.6560 20 6 12.9191 -0.9296 2.1913 21 1 12.4636 -1.9073 2.2466 22 6 14.2824 -0.7944 2.3467 23 7 14.8370 0.3962 2.2797 24 14 15.3417 -2.3024 2.6524 25 1 14.4820 -3.5129 2.6840 26 1 16.3422 -2.4336 1.5629 27 1 16.0426 -2.1595 3.9536 28 6 6.1972 1.8872 1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9899 0.6025 -0.0013 37 1 5.8139 4.5758 -0.8718 38 1 5.8527 4.5564 0.9074 39 1 8.0718 3.5279 -0.9193 40 1 8.0893 5.0814 -0.0492 41 1 7.9898 3.9201 2.1141 42 1 9.3455 3.2590 1.1641 43 1 10.1787 1.9242 1.5234 44 1 10.4980 -0.8276 0.9740 45 1 10.2783 -0.6278 2.7291 46 1 13.2519 1.5587 3.2156 47 1 11.5907 2.1371 2.9420 48 1 11.8869 0.7662 4.0379 49 1 12.4135 0.2850 -0.1805 50 1 11.8982 1.8561 0.4785 51 1 13.5592 1.2784 0.7520 52 1 15.7962 0.4912 2.3887 53 1 5.9197 0.8342 1.2028 54 1 5.7613 2.3404 2.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459252254.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:24 Heat of formation + Delta-G solvation = -103.220120 kcal Electronic energy + Delta-G solvation = -30560.601547 eV Core-core repulsion = 26530.881990 eV Total energy + Delta-G solvation = -4029.719557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73483 -40.76923 -38.65110 -37.81274 -36.77866 -35.14748 -33.98655 -33.59252 -32.58001 -31.94025 -27.62977 -27.54117 -27.39134 -27.09469 -25.63377 -24.74912 -22.71817 -22.42272 -21.21241 -20.60848 -20.55675 -19.31565 -17.92277 -17.76985 -17.32634 -17.15553 -16.78831 -16.60613 -16.49114 -15.92185 -15.40128 -15.36682 -15.13282 -14.86312 -14.78145 -14.66579 -14.34069 -14.01448 -13.96447 -13.87892 -13.58783 -13.33994 -13.18186 -13.08671 -12.94446 -12.68400 -12.55121 -12.52844 -12.23598 -12.13701 -12.07367 -11.96263 -11.94688 -11.77271 -11.64464 -11.46191 -11.29498 -11.11489 -10.86615 -10.67550 -10.38360 -10.15127 -10.08370 -9.46256 -8.00430 -6.15439 1.42606 1.42952 1.47305 1.56167 1.73222 2.14484 2.20643 2.47311 3.02850 3.23362 3.59533 3.67365 3.80617 3.90540 4.01244 4.06139 4.11781 4.24157 4.34173 4.41860 4.48781 4.54097 4.56860 4.65962 4.70551 4.73670 4.75750 4.77175 4.85639 4.89401 5.00472 5.06373 5.07789 5.12602 5.14877 5.15065 5.22546 5.22799 5.30777 5.37855 5.40892 5.46900 5.50876 5.64793 5.69710 5.70021 5.95010 6.17632 6.24325 6.45095 6.46083 6.88918 7.02240 7.15104 7.52054 7.59628 8.98645 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.002172 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.427883 B =12890.943754 C =14038.106462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.117 3.883 4 N -0.723 5.723 5 C 0.524 3.476 6 O -0.573 6.573 7 C -0.114 4.114 8 H 0.106 0.894 9 C -0.093 4.093 10 C -0.126 4.126 11 C 0.102 3.898 12 N -0.625 5.625 13 C 0.700 3.300 14 O -0.635 6.635 15 N -0.727 5.727 16 C 0.167 3.833 17 C 0.050 3.950 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.524 4.524 21 H 0.045 0.955 22 C 0.027 3.973 23 N -0.899 5.899 24 Si 0.944 3.056 25 H -0.275 1.275 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.144 3.856 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.412 0.588 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.403 0.597 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.062 0.938 47 H 0.035 0.965 48 H 0.018 0.982 49 H 0.018 0.982 50 H 0.035 0.965 51 H 0.062 0.938 52 H 0.260 0.740 53 H 0.088 0.912 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.889 7.236 -5.081 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.006 4.006 4 N -0.375 5.375 5 C 0.310 3.690 6 O -0.452 6.452 7 C -0.137 4.137 8 H 0.124 0.876 9 C -0.131 4.131 10 C -0.164 4.164 11 C -0.020 4.020 12 N -0.362 5.362 13 C 0.402 3.598 14 O -0.517 6.517 15 N -0.384 5.384 16 C 0.043 3.957 17 C 0.050 3.950 18 C -0.176 4.176 19 C -0.176 4.176 20 C -0.563 4.563 21 H 0.063 0.937 22 C -0.173 4.173 23 N -0.537 5.537 24 Si 0.772 3.228 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.208 1.208 28 C 0.020 3.980 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.243 0.757 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.053 0.947 51 H 0.081 0.919 52 H 0.069 0.931 53 H 0.107 0.893 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.490 7.254 -5.061 24.167 hybrid contribution 1.192 -1.002 0.165 1.566 sum -21.298 6.252 -4.895 22.731 Atomic orbital electron populations 1.21681 0.93925 1.02740 1.02338 1.21713 0.97446 0.94321 1.03436 1.21471 0.78939 0.98517 1.01710 1.46129 1.07996 1.08897 1.74481 1.20643 0.90001 0.83448 0.74919 1.90683 1.70946 1.32527 1.51086 1.21698 0.90663 1.00351 1.00941 0.87570 1.21286 0.95177 0.93152 1.03521 1.21986 0.94859 1.02280 0.97280 1.22026 0.98213 0.81925 0.99881 1.47206 1.06048 1.05505 1.77456 1.16053 0.81893 0.84162 0.77700 1.90834 1.74225 1.25813 1.60812 1.45402 1.04912 1.11737 1.76324 1.21134 0.90689 0.85766 0.98159 1.18379 0.88661 0.94513 0.93481 1.21650 1.01869 0.97004 0.97123 1.21646 1.02191 0.97298 0.96471 1.21280 0.92499 0.93247 1.49278 0.93692 1.25445 0.98789 0.97999 0.95020 1.69912 1.11039 1.22425 1.50362 0.85716 0.78896 0.80689 0.77546 1.19993 1.20827 1.20842 1.21299 0.78538 1.01703 0.96457 0.92286 0.91370 0.92374 0.90650 0.90796 0.92205 0.92148 0.75155 0.90984 0.91176 0.91563 0.87888 0.89474 0.89917 0.75725 0.94546 0.94578 0.91893 0.94621 0.96325 0.96325 0.94651 0.91895 0.93077 0.89344 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.58 16 2 C -0.13 -1.32 6.05 30.59 0.19 -1.13 16 3 C 0.12 1.69 5.67 86.38 0.49 2.18 16 4 N -0.72 -11.52 5.46 -463.05 -2.53 -14.05 16 5 C 0.52 10.68 7.16 87.66 0.63 11.31 16 6 O -0.57 -15.57 15.98 -3.03 -0.05 -15.62 16 7 C -0.11 -2.07 2.68 -11.46 -0.03 -2.10 16 8 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 9 C -0.09 -1.57 4.46 30.62 0.14 -1.44 16 10 C -0.13 -1.87 6.10 30.82 0.19 -1.68 16 11 C 0.10 1.85 6.42 86.51 0.56 2.40 16 12 N -0.62 -15.26 2.97 -836.06 -2.48 -17.74 16 13 C 0.70 23.60 8.30 179.06 1.49 25.09 16 14 O -0.63 -26.07 15.77 -3.97 -0.06 -26.13 16 15 N -0.73 -24.87 4.87 -478.55 -2.33 -27.20 16 16 C 0.17 7.03 4.51 86.38 0.39 7.42 16 17 C 0.05 2.29 0.50 -52.92 -0.03 2.26 16 18 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 19 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 20 C -0.52 -27.36 8.01 25.60 0.21 -27.15 16 21 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 22 C 0.03 1.41 5.15 84.65 0.44 1.85 16 23 N -0.90 -47.21 9.35 21.45 0.20 -47.01 16 24 Si 0.94 42.22 29.54 68.60 2.03 44.25 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 C 0.14 3.00 5.58 86.36 0.48 3.48 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.41 5.31 8.01 -92.71 -0.74 4.57 16 37 H 0.07 1.26 8.07 -2.38 -0.02 1.24 16 38 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.52 5.64 -2.39 -0.01 1.51 16 43 H 0.40 12.05 3.65 -92.71 -0.34 11.71 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 47 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 50 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 51 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 52 H 0.26 13.13 8.31 -92.70 -0.77 12.36 16 53 H 0.09 2.02 6.59 -2.39 -0.02 2.01 16 54 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -65.47 414.17 1.58 -63.89 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.19 Total: 26.84 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 7.00 Total: 12.78 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -7.14 Total: -106.01 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.11 Total: -41.75 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -65.47 1.58 -63.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252254.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.332 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds