Wall clock time and date at job start Sat Apr 11 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 N 1.46504 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.34777 * 119.99808 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00333 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.99620 * 179.97438 * 5 4 3 8 8 N 1.46505 * 109.46975 * 180.02562 * 7 5 4 9 9 C 1.46504 * 119.99821 * 270.00394 * 8 7 5 10 10 C 1.34772 * 119.99746 * 90.00340 * 8 7 5 11 11 O 1.21279 * 120.00204 * 0.02562 * 10 8 7 12 12 C 1.50708 * 119.99691 * 180.02562 * 10 8 7 13 13 N 1.46902 * 109.46919 * 173.73020 * 12 10 8 14 14 C 1.46840 * 110.99709 * 169.39516 * 13 12 10 15 15 C 1.53041 * 109.52074 * 185.83959 * 14 13 12 16 16 C 1.53119 * 109.28117 * 300.82002 * 15 14 13 17 17 C 1.52993 * 109.57528 * 177.59104 * 16 15 14 18 18 C 1.50696 * 109.47276 * 65.28690 * 17 16 15 19 19 H 1.08003 * 120.00202 * 359.97438 * 18 17 16 20 20 C 1.37884 * 120.00270 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47247 * 90.00025 * 22 20 18 24 24 H 1.48496 * 109.47286 * 209.99792 * 22 20 18 25 25 H 1.48499 * 109.47406 * 329.99852 * 22 20 18 26 26 C 1.53118 * 109.15584 * 57.65475 * 16 15 14 27 27 C 1.46841 * 111.00200 * 293.60592 * 13 12 10 28 28 H 1.08991 * 109.47270 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46406 * 300.00284 * 1 2 3 30 30 H 1.09000 * 109.47313 * 59.99632 * 1 2 3 31 31 H 1.09004 * 109.46918 * 240.00287 * 2 1 3 32 32 H 1.09000 * 109.47313 * 120.00368 * 2 1 3 33 33 H 1.08999 * 109.47685 * 59.99964 * 3 2 1 34 34 H 1.09001 * 109.47370 * 299.99909 * 3 2 1 35 35 H 0.96998 * 119.99730 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.46677 * 60.00506 * 7 5 4 37 37 H 1.08997 * 109.47619 * 299.99988 * 7 5 4 38 38 H 1.08995 * 109.47010 * 90.00425 * 9 8 7 39 39 H 1.09001 * 109.46407 * 209.99701 * 9 8 7 40 40 H 1.08996 * 109.47272 * 330.00067 * 9 8 7 41 41 H 1.09000 * 109.46945 * 293.72940 * 12 10 8 42 42 H 1.08994 * 109.46981 * 53.73361 * 12 10 8 43 43 H 1.09004 * 109.46579 * 305.85647 * 14 13 12 44 44 H 1.09002 * 109.46439 * 65.82626 * 14 13 12 45 45 H 1.09003 * 109.50159 * 180.87639 * 15 14 13 46 46 H 1.09004 * 109.50385 * 60.76739 * 15 14 13 47 47 H 1.08999 * 109.52272 * 297.75314 * 16 15 14 48 48 H 1.08998 * 109.47201 * 185.28766 * 17 16 15 49 49 H 1.09005 * 109.47282 * 305.28667 * 17 16 15 50 50 H 0.96997 * 120.00324 * 179.97438 * 21 20 18 51 51 H 1.09000 * 109.50284 * 182.40255 * 26 16 15 52 52 H 1.08998 * 109.53843 * 62.30786 * 26 16 15 53 53 H 1.09001 * 109.46374 * 294.17946 * 27 13 12 54 54 H 1.09005 * 109.46091 * 54.15738 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0012 6 8 3.5726 3.6599 -0.0008 7 6 5.6860 2.6095 -0.0013 8 7 6.1744 3.9907 -0.0014 9 6 6.4185 4.6813 -1.2703 10 6 6.3992 4.6261 1.1657 11 8 6.1975 4.0543 2.2161 12 6 6.9010 6.0471 1.1656 13 7 6.9219 6.5592 2.5423 14 6 7.6350 7.8407 2.6163 15 6 7.7635 8.2706 4.0795 16 6 6.3663 8.4066 4.6911 17 6 6.4882 8.7779 6.1702 18 6 7.1051 10.1471 6.2953 19 1 7.3830 10.6973 5.4085 20 6 7.3149 10.6975 7.5420 21 7 6.9771 10.0274 8.6220 22 14 8.0790 12.3950 7.6970 23 1 7.0067 13.4224 7.6976 24 1 8.8455 12.4789 8.9661 25 1 8.9922 12.6334 6.5505 26 6 5.6274 7.0722 4.5576 27 6 5.5608 6.6770 3.0806 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9900 0.6023 -0.0006 36 1 6.0492 2.0953 -0.8911 37 1 6.0494 2.0961 0.8889 38 1 5.5102 5.1951 -1.5848 39 1 7.2204 5.4079 -1.1399 40 1 6.7064 3.9546 -2.0299 41 1 7.9090 6.0764 0.7517 42 1 6.2406 6.6656 0.5579 43 1 8.6285 7.7291 2.1820 44 1 7.0797 8.5978 2.0628 45 1 8.2791 9.2295 4.1331 46 1 8.3307 7.5205 4.6308 47 1 5.8124 9.1840 4.1648 48 1 5.4983 8.7824 6.6265 49 1 7.1187 8.0476 6.6775 50 1 7.1250 10.4144 9.4990 51 1 4.6167 7.1748 4.9528 52 1 6.1602 6.3029 5.1165 53 1 5.0151 7.4396 2.5249 54 1 5.0477 5.7202 2.9837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578744995.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:33 Heat of formation + Delta-G solvation = -107.979861 kcal Electronic energy + Delta-G solvation = -30017.389597 eV Core-core repulsion = 25987.463642 eV Total energy + Delta-G solvation = -4029.925955 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.49325 -40.48144 -39.44848 -36.94884 -36.31523 -36.05380 -34.25366 -33.65850 -31.73795 -31.10986 -29.80582 -27.90794 -27.40114 -26.21845 -24.99930 -23.98112 -22.63831 -22.39622 -21.71533 -20.48104 -20.18189 -18.43796 -18.33151 -18.18103 -17.60775 -16.95578 -16.74372 -16.52569 -16.51330 -16.09739 -15.64700 -15.49027 -15.18377 -15.07741 -14.82332 -14.61744 -14.16212 -13.96704 -13.90885 -13.81823 -13.75894 -13.62823 -13.27029 -13.21079 -12.96354 -12.91761 -12.85102 -12.67635 -12.61521 -12.45110 -12.17128 -12.07558 -12.04982 -11.78540 -11.68159 -11.30370 -11.23386 -10.95872 -10.90738 -10.58872 -10.51649 -10.15439 -9.70235 -9.24059 -8.15834 -6.26321 1.40391 1.42491 1.48640 1.53419 1.59207 1.86644 2.35083 2.43032 2.95701 3.16896 3.58886 3.79519 3.91685 3.98781 4.00529 4.03041 4.07204 4.19964 4.27041 4.31126 4.33720 4.35812 4.39825 4.43678 4.55790 4.62022 4.65363 4.70988 4.72551 4.73186 4.81711 4.83609 4.94296 4.96593 5.04791 5.11559 5.13454 5.21081 5.30545 5.34581 5.38562 5.41480 5.45913 5.46664 5.56645 5.79256 5.87974 6.02242 6.12404 6.29290 6.36102 6.51053 6.89557 7.17680 7.24730 7.41943 8.96516 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017761 B = 0.001971 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.118165 B =14203.197409 C =15338.485331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.117 3.883 4 N -0.718 5.718 5 C 0.488 3.512 6 O -0.582 6.582 7 C 0.098 3.902 8 N -0.604 5.604 9 C 0.074 3.926 10 C 0.513 3.487 11 O -0.563 6.563 12 C 0.041 3.959 13 N -0.538 5.538 14 C 0.068 3.932 15 C -0.094 4.094 16 C -0.073 4.073 17 C 0.033 3.967 18 C -0.528 4.528 19 H 0.065 0.935 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.259 1.259 26 C -0.103 4.103 27 C 0.074 3.926 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.419 0.581 36 H 0.157 0.843 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.137 0.863 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.052 0.948 48 H -0.019 1.019 49 H -0.015 1.015 50 H 0.261 0.739 51 H 0.052 0.948 52 H 0.046 0.954 53 H 0.030 0.970 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -21.699 -29.347 36.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.007 4.007 4 N -0.372 5.372 5 C 0.274 3.726 6 O -0.462 6.462 7 C -0.029 4.029 8 N -0.337 5.337 9 C -0.068 4.068 10 C 0.302 3.698 11 O -0.440 6.440 12 C -0.089 4.089 13 N -0.263 5.263 14 C -0.059 4.059 15 C -0.132 4.132 16 C -0.092 4.092 17 C -0.004 4.004 18 C -0.566 4.566 19 H 0.084 0.916 20 C -0.203 4.203 21 N -0.579 5.579 22 Si 0.791 3.209 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.141 4.141 27 C -0.054 4.054 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.256 0.744 36 H 0.175 0.825 37 H 0.128 0.872 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.155 0.845 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.060 0.940 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.000 1.000 49 H 0.004 0.996 50 H 0.070 0.930 51 H 0.071 0.929 52 H 0.065 0.935 53 H 0.048 0.952 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.691 -21.573 -28.343 35.810 hybrid contribution -0.489 1.037 0.585 1.287 sum -4.180 -20.536 -27.758 34.780 Atomic orbital electron populations 1.21708 0.94510 1.02840 1.01988 1.21677 0.96983 0.93705 1.03868 1.21397 0.79594 0.98862 1.00830 1.45914 1.07497 1.08848 1.74956 1.21876 0.92042 0.83679 0.74972 1.90701 1.71320 1.33270 1.50882 1.21503 0.88814 0.84880 1.07678 1.47558 1.65103 1.13872 1.07205 1.22112 1.01814 0.99032 0.83850 1.21007 0.76579 0.89117 0.83119 1.90685 1.52520 1.68136 1.32677 1.22076 1.04444 0.91735 0.90639 1.61526 1.16866 1.28680 1.19249 1.22134 0.99124 0.88230 0.96436 1.21425 0.96276 1.00576 0.94910 1.21091 0.96371 0.95056 0.96692 1.19006 0.94220 0.95246 0.91898 1.21641 1.39962 1.02456 0.92491 0.91645 1.26048 0.96462 1.02180 0.95657 1.70132 1.49596 1.39872 0.98284 0.85423 0.78571 0.79090 0.77805 1.20008 1.21015 1.18263 1.21530 0.99459 0.97234 0.95833 1.21903 0.89195 0.99449 0.94806 0.90884 0.93267 0.92366 0.89440 0.90648 0.94166 0.92384 0.74420 0.82535 0.87238 0.93355 0.88837 0.87732 0.84495 0.90733 0.88204 0.94048 0.91454 0.93552 0.92998 1.00034 0.99640 0.92993 0.92919 0.93484 0.95186 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -0.95 6.05 30.59 0.19 -0.77 16 3 C 0.12 1.70 5.67 86.38 0.49 2.19 16 4 N -0.72 -9.42 5.56 -463.06 -2.57 -12.00 16 5 C 0.49 9.77 7.90 87.66 0.69 10.46 16 6 O -0.58 -17.89 16.43 -3.03 -0.05 -17.94 16 7 C 0.10 1.36 5.93 85.63 0.51 1.86 16 8 N -0.60 -10.84 2.36 -851.12 -2.01 -12.85 16 9 C 0.07 0.70 10.17 127.77 1.30 2.00 16 10 C 0.51 13.58 7.20 87.66 0.63 14.21 16 11 O -0.56 -20.29 14.29 -3.03 -0.04 -20.33 16 12 C 0.04 0.95 3.92 85.56 0.33 1.29 16 13 N -0.54 -17.09 4.35 -900.93 -3.92 -21.01 16 14 C 0.07 2.01 5.46 86.33 0.47 2.49 16 15 C -0.09 -3.71 5.15 30.65 0.16 -3.56 16 16 C -0.07 -3.33 2.20 -10.72 -0.02 -3.35 16 17 C 0.03 1.90 4.45 29.84 0.13 2.03 16 18 C -0.53 -30.96 8.45 25.60 0.22 -30.74 16 19 H 0.07 3.62 7.08 -2.91 -0.02 3.60 16 20 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 21 N -0.94 -59.79 13.29 21.45 0.28 -59.50 16 22 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 C -0.10 -4.34 5.38 30.65 0.16 -4.18 16 27 C 0.07 2.71 5.12 86.33 0.44 3.15 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.37 8.14 -2.38 -0.02 0.36 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.42 2.25 8.47 -92.71 -0.79 1.47 16 36 H 0.16 0.52 7.89 -2.39 -0.02 0.50 16 37 H 0.11 1.70 7.42 -2.39 -0.02 1.68 16 38 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 0.58 6.61 -2.39 -0.02 0.56 16 40 H 0.10 0.32 7.89 -2.39 -0.02 0.30 16 41 H 0.14 2.14 7.55 -2.39 -0.02 2.13 16 42 H 0.07 1.52 7.90 -2.39 -0.02 1.50 16 43 H 0.10 2.36 8.01 -2.38 -0.02 2.34 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 2.72 7.06 -2.39 -0.02 2.70 16 46 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 48 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 49 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 50 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 51 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 53 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 54 H 0.06 2.50 6.06 -2.38 -0.01 2.49 16 Total: -1.00 -87.89 426.07 0.67 -87.22 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.07 Total: 12.17 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.88 Total: -3.39 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -8.21 Total: -105.36 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.09 Total: -38.28 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -87.89 0.67 -87.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578744995.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.762 kcal (2) G-P(sol) polarization free energy of solvation -87.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds