Wall clock time and date at job start Sat Apr 11 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46865 * 2 1 4 4 N 1.46500 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.34783 * 119.99825 * 83.15614 * 4 3 2 6 6 O 1.21345 * 120.00014 * 184.03866 * 5 4 3 7 7 C 1.49455 * 119.99580 * 4.04513 * 5 4 3 8 8 O 1.21347 * 120.00253 * 354.27319 * 7 5 4 9 9 N 1.34783 * 119.99527 * 174.28078 * 7 5 4 10 10 C 1.46498 * 119.99498 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46645 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47410 * 60.00193 * 11 10 9 13 13 C 1.52997 * 109.47305 * 299.99981 * 11 10 9 14 14 C 1.50705 * 109.47240 * 180.02562 * 11 10 9 15 15 H 1.08004 * 119.99282 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00278 * 179.72436 * 14 11 10 17 17 N 1.31519 * 119.99702 * 0.27784 * 16 14 11 18 18 Si 1.86791 * 120.00049 * 180.27466 * 16 14 11 19 19 H 1.48499 * 109.47196 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47290 * 120.00147 * 18 16 14 21 21 H 1.48505 * 109.47298 * 240.00116 * 18 16 14 22 22 C 1.46496 * 120.00355 * 263.16283 * 4 3 2 23 23 H 1.08997 * 110.28788 * 0.69314 * 22 4 3 24 24 C 1.54262 * 110.32197 * 238.57131 * 22 4 3 25 25 C 1.54383 * 105.06008 * 241.09857 * 24 22 4 26 26 N 1.48559 * 104.59156 * 23.85889 * 25 24 22 27 27 C 1.46907 * 110.99689 * 200.95867 * 26 25 24 28 28 C 1.48823 * 104.23396 * 320.48617 * 26 25 24 29 29 H 1.09007 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47329 * 299.99858 * 1 2 3 31 31 H 1.09003 * 109.47119 * 60.00275 * 1 2 3 32 32 H 1.08997 * 109.47824 * 240.00148 * 2 1 3 33 33 H 1.09003 * 109.47119 * 119.99725 * 2 1 3 34 34 H 1.09007 * 109.47215 * 60.00152 * 3 2 1 35 35 H 1.08994 * 109.47106 * 300.00024 * 3 2 1 36 36 H 0.97001 * 119.99713 * 359.97438 * 9 7 5 37 37 H 1.08994 * 109.47493 * 60.00035 * 10 9 7 38 38 H 1.08997 * 109.47189 * 299.99564 * 10 9 7 39 39 H 1.08998 * 109.47731 * 179.97438 * 12 11 10 40 40 H 1.09004 * 109.46783 * 300.00034 * 12 11 10 41 41 H 1.08997 * 109.47449 * 59.99798 * 12 11 10 42 42 H 1.09002 * 109.47211 * 300.00106 * 13 11 10 43 43 H 1.08996 * 109.47219 * 60.00075 * 13 11 10 44 44 H 1.09004 * 109.47538 * 180.02562 * 13 11 10 45 45 H 0.97000 * 119.99383 * 180.02562 * 17 16 14 46 46 H 1.08994 * 110.32497 * 359.97438 * 24 22 4 47 47 H 1.09009 * 110.32135 * 122.10527 * 24 22 4 48 48 H 1.09000 * 110.40421 * 142.62852 * 25 24 22 49 49 H 1.08999 * 110.41148 * 264.95440 * 25 24 22 50 50 H 1.09000 * 109.47112 * 60.11903 * 27 26 25 51 51 H 1.08997 * 109.47041 * 180.12264 * 27 26 25 52 52 H 1.08997 * 109.46702 * 300.12656 * 27 26 25 53 53 H 1.09000 * 110.45684 * 280.77434 * 28 26 25 54 54 H 1.09004 * 110.49372 * 158.25776 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4427 0.0006 5 6 4.1793 1.3035 -1.1580 6 8 5.3905 1.2299 -1.1500 7 6 3.4353 1.2398 -2.4526 8 8 2.2222 1.2087 -2.4544 9 7 4.1117 1.2169 -3.6182 10 6 3.3824 1.1539 -4.8872 11 6 4.3790 1.1401 -6.0479 12 6 5.2910 -0.0821 -5.9227 13 6 5.2254 2.4140 -6.0087 14 6 3.6289 1.0759 -7.3534 15 1 2.5492 1.0475 -7.3549 16 6 4.3207 1.0588 -8.5460 17 7 5.6354 1.0929 -8.5440 18 14 3.3906 0.9871 -10.1643 19 1 1.9305 0.9565 -9.8951 20 1 3.7195 2.1851 -10.9778 21 1 3.7823 -0.2380 -10.9065 22 6 4.2370 1.5940 1.2605 23 1 3.5403 1.6816 2.0942 24 6 5.1580 2.8299 1.1999 25 6 6.5868 2.2749 1.3841 26 7 6.4967 0.8574 0.9486 27 6 7.5987 0.0636 1.5085 28 6 5.1847 0.3949 1.4774 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 5.0814 1.2420 -3.6167 37 1 2.7331 2.0248 -4.9767 38 1 2.7792 0.2465 -4.9149 39 1 6.0007 -0.0923 -6.7498 40 1 5.8335 -0.0353 -4.9784 41 1 4.6881 -0.9897 -5.9506 42 1 4.5757 3.2847 -6.0980 43 1 5.7680 2.4609 -5.0646 44 1 5.9352 2.4044 -6.8360 45 1 6.1220 1.0813 -9.3830 46 1 5.0658 3.3237 0.2326 47 1 4.9134 3.5242 2.0040 48 1 7.2906 2.8214 0.7563 49 1 6.8860 2.3348 2.4305 50 1 7.5536 0.0966 2.5971 51 1 7.5098 -0.9694 1.1722 52 1 8.5503 0.4748 1.1718 53 1 5.2634 0.1595 2.5388 54 1 4.8332 -0.4733 0.9198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592341797.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:50 Heat of formation + Delta-G solvation = -58.428289 kcal Electronic energy + Delta-G solvation = -31941.391057 eV Core-core repulsion = 27913.613820 eV Total energy + Delta-G solvation = -4027.777237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98687 -40.29212 -38.62193 -38.21119 -37.05164 -34.91215 -34.00358 -32.69927 -32.00778 -29.64648 -27.94201 -27.59268 -27.29465 -26.86958 -26.44462 -24.56930 -22.56950 -22.15671 -22.05243 -20.72570 -20.29751 -18.67498 -17.83877 -17.67117 -17.11804 -16.87999 -16.63239 -16.55147 -16.14024 -15.68129 -15.59399 -15.47353 -14.99225 -14.81967 -14.68518 -14.40675 -14.12057 -14.03265 -13.77272 -13.30980 -13.21693 -13.20750 -13.11865 -13.02027 -12.85202 -12.69456 -12.59773 -12.54985 -12.40588 -12.28056 -12.21680 -12.12268 -11.97532 -11.96715 -11.73873 -11.52696 -11.42544 -11.24191 -10.72058 -10.40584 -10.13158 -10.02674 -9.61224 -9.08730 -8.01217 -6.17862 0.59905 1.43005 1.45611 1.49385 1.56933 2.34389 2.45039 2.64502 3.19732 3.22480 3.47126 3.68417 3.75147 4.02019 4.20555 4.23976 4.32226 4.35135 4.37618 4.48020 4.49072 4.54349 4.55604 4.61121 4.68426 4.68615 4.80780 4.88056 4.89663 4.94318 4.99980 5.02323 5.04069 5.04507 5.08802 5.17188 5.18575 5.20166 5.32110 5.35242 5.44852 5.57504 5.64438 5.66256 5.67548 6.03124 6.10549 6.13316 6.19508 6.22504 6.41550 6.44802 6.85909 6.93745 7.18077 7.50159 8.98201 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003042 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.180439 B = 9202.798685 C =10570.084826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.098 3.902 4 N -0.578 5.578 5 C 0.495 3.505 6 O -0.485 6.485 7 C 0.488 3.512 8 O -0.538 6.538 9 N -0.686 5.686 10 C 0.148 3.852 11 C 0.051 3.949 12 C -0.120 4.120 13 C -0.120 4.120 14 C -0.525 4.525 15 H 0.051 0.949 16 C 0.026 3.974 17 N -0.901 5.901 18 Si 0.949 3.051 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.141 3.859 23 H 0.135 0.865 24 C -0.128 4.128 25 C 0.042 3.958 26 N -0.512 5.512 27 C 0.017 3.983 28 C 0.029 3.971 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.410 0.590 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.260 0.740 46 H 0.051 0.949 47 H 0.103 0.897 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.039 0.961 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.071 0.929 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 1.295 25.631 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.024 4.024 4 N -0.312 5.312 5 C 0.276 3.724 6 O -0.357 6.357 7 C 0.270 3.730 8 O -0.417 6.417 9 N -0.338 5.338 10 C 0.025 3.975 11 C 0.050 3.950 12 C -0.178 4.178 13 C -0.178 4.178 14 C -0.564 4.564 15 H 0.069 0.931 16 C -0.174 4.174 17 N -0.540 5.540 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 C 0.038 3.962 23 H 0.153 0.847 24 C -0.166 4.166 25 C -0.086 4.086 26 N -0.236 5.236 27 C -0.132 4.132 28 C -0.099 4.099 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.247 0.753 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.046 0.954 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.121 0.879 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.057 0.943 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.089 0.911 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.669 1.175 24.901 25.071 hybrid contribution 0.162 -0.214 -0.735 0.782 sum -2.506 0.962 24.166 24.315 Atomic orbital electron populations 1.21595 0.94228 1.01880 1.02114 1.21745 0.97079 0.96707 1.00819 1.22263 0.77061 0.98048 1.05031 1.47952 1.07816 1.70344 1.05132 1.20028 0.87730 0.79519 0.85142 1.90951 1.12728 1.45643 1.86381 1.20725 0.87877 0.78270 0.86155 1.90615 1.13895 1.49776 1.87396 1.46076 1.11632 1.70676 1.05424 1.21433 0.94762 0.99847 0.81446 1.18368 0.92204 0.93151 0.91258 1.21669 0.99674 0.97179 0.99292 1.21670 0.99716 0.96985 0.99459 1.21279 0.92821 1.51064 0.91222 0.93111 1.25508 0.95603 0.94672 1.01601 1.69944 1.06597 1.50677 1.26772 0.85649 0.79079 0.77398 0.80329 1.19604 1.20826 1.20912 1.22175 0.94157 0.94569 0.85294 0.84699 1.22678 0.94146 0.97173 1.02628 1.22980 0.97268 0.89666 0.98663 1.65571 1.01582 1.02299 1.54175 1.22487 0.94936 0.98426 0.97363 1.23460 0.90423 0.97441 0.98613 0.92645 0.90772 0.93715 0.94858 0.91374 0.87844 0.89041 0.75324 0.93012 0.93273 0.91905 0.95437 0.96006 0.95845 0.95400 0.91870 0.93086 0.92968 0.87882 0.91780 0.92332 0.94292 0.92273 0.91711 0.91062 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.59 5.76 30.60 0.18 -2.41 16 3 C 0.10 1.97 4.99 86.38 0.43 2.40 16 4 N -0.58 -13.17 2.43 -794.43 -1.93 -15.09 16 5 C 0.50 15.14 6.71 87.27 0.59 15.73 16 6 O -0.48 -16.46 12.52 -3.23 -0.04 -16.50 16 7 C 0.49 17.18 7.66 87.27 0.67 17.84 16 8 O -0.54 -19.69 11.85 -3.24 -0.04 -19.73 16 9 N -0.69 -25.96 4.95 -464.42 -2.30 -28.26 16 10 C 0.15 6.33 4.50 86.38 0.39 6.72 16 11 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 12 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 13 C -0.12 -5.63 8.07 71.98 0.58 -5.05 16 14 C -0.53 -27.85 8.01 25.60 0.21 -27.64 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C 0.03 1.37 5.15 84.65 0.44 1.81 16 17 N -0.90 -49.06 9.35 21.45 0.20 -48.86 16 18 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.14 2.38 3.57 45.89 0.16 2.55 16 23 H 0.14 1.29 7.76 -2.39 -0.02 1.28 16 24 C -0.13 -2.21 6.06 31.49 0.19 -2.02 16 25 C 0.04 0.80 6.29 86.45 0.54 1.34 16 26 N -0.51 -11.78 3.35 -906.88 -3.03 -14.82 16 27 C 0.02 0.32 9.53 127.69 1.22 1.53 16 28 C 0.03 0.56 5.48 86.40 0.47 1.03 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.03 0.93 7.04 -2.39 -0.02 0.91 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.34 7.81 -2.38 -0.02 1.33 16 35 H 0.09 2.38 5.39 -2.41 -0.01 2.36 16 36 H 0.41 15.49 5.65 -92.71 -0.52 14.97 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 3.27 6.08 -2.39 -0.01 3.25 16 40 H 0.03 1.15 6.86 -2.38 -0.02 1.14 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 44 H 0.06 3.27 6.06 -2.39 -0.01 3.25 16 45 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 46 H 0.05 1.21 7.19 -2.39 -0.02 1.20 16 47 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.06 0.84 7.98 -2.39 -0.02 0.82 16 50 H 0.04 0.58 7.98 -2.39 -0.02 0.56 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.07 0.99 7.91 -2.39 -0.02 0.97 16 54 H 0.06 1.41 7.99 -2.39 -0.02 1.39 16 Total: -1.00 -61.47 407.90 2.57 -58.90 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.35 Total: 30.22 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 7.33 Total: 9.33 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -7.06 Total: -107.03 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.08 Total: -36.23 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -61.47 2.57 -58.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592341797.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.475 kcal (2) G-P(sol) polarization free energy of solvation -61.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds