Wall clock time and date at job start Sat Apr 11 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46948 * 2 1 4 4 N 1.46503 * 109.46997 * 119.99726 * 2 1 3 5 5 C 1.34767 * 119.99545 * 155.00026 * 4 2 1 6 6 O 1.21280 * 120.00598 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99910 * 180.02562 * 5 4 2 8 8 H 1.08994 * 109.49551 * 300.06503 * 7 5 4 9 9 C 1.53042 * 109.49552 * 60.16506 * 7 5 4 10 10 C 1.53046 * 109.53586 * 181.32079 * 9 7 5 11 11 C 1.53619 * 109.23883 * 298.50420 * 10 9 7 12 12 N 1.46929 * 108.54109 * 54.86080 * 11 10 9 13 13 C 1.34774 * 120.62763 * 126.37086 * 12 11 10 14 14 O 1.21287 * 119.99748 * 179.72168 * 13 12 11 15 15 C 1.50696 * 120.00490 * 359.71239 * 13 12 11 16 16 H 1.09006 * 109.46755 * 40.00812 * 15 13 12 17 17 N 1.46895 * 109.47178 * 160.00188 * 15 13 12 18 18 C 1.52997 * 109.47268 * 280.00484 * 15 13 12 19 19 C 1.53006 * 109.47127 * 174.99506 * 18 15 13 20 20 C 1.52997 * 109.47127 * 180.02562 * 19 18 15 21 21 C 1.50696 * 109.47055 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00290 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00258 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99506 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00308 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.46854 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47025 * 119.99441 * 25 23 21 28 28 H 1.48498 * 109.46692 * 239.99413 * 25 23 21 29 29 C 1.46928 * 118.73957 * 306.08800 * 12 11 10 30 30 H 1.09004 * 109.47236 * 300.00433 * 1 2 3 31 31 H 1.08996 * 109.47109 * 60.00094 * 1 2 3 32 32 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46680 * 240.00120 * 2 1 3 34 34 H 1.08995 * 109.47321 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47229 * 299.99875 * 3 2 1 36 36 H 1.09004 * 109.47506 * 59.99732 * 3 2 1 37 37 H 0.96999 * 119.99928 * 335.00780 * 4 2 1 38 38 H 1.09006 * 109.45594 * 301.33601 * 9 7 5 39 39 H 1.08995 * 109.46282 * 61.30671 * 9 7 5 40 40 H 1.08996 * 109.50054 * 58.58431 * 10 9 7 41 41 H 1.09002 * 109.49438 * 178.68089 * 10 9 7 42 42 H 1.09002 * 109.74126 * 295.12495 * 11 10 9 43 43 H 1.09003 * 109.66552 * 174.55087 * 11 10 9 44 44 H 1.00900 * 111.00349 * 60.00615 * 17 15 13 45 45 H 1.00909 * 111.00123 * 183.95426 * 17 15 13 46 46 H 1.09001 * 109.46832 * 54.99827 * 18 15 13 47 47 H 1.08993 * 109.47194 * 294.99348 * 18 15 13 48 48 H 1.09001 * 109.46801 * 300.00272 * 19 18 15 49 49 H 1.09001 * 109.46998 * 59.99868 * 19 18 15 50 50 H 1.08996 * 109.46952 * 300.00302 * 20 19 18 51 51 H 1.09001 * 109.46832 * 60.00321 * 20 19 18 52 52 H 0.96999 * 119.99910 * 180.02562 * 24 23 21 53 53 H 1.09001 * 109.58596 * 173.65128 * 29 12 11 54 54 H 1.09003 * 109.58908 * 293.93569 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2402 -1.2591 1.1944 6 8 3.9354 -1.1994 0.2024 7 6 3.7424 -1.9700 2.4247 8 1 3.7780 -1.2706 3.2599 9 6 2.8007 -3.1270 2.7662 10 6 3.2916 -3.8292 4.0343 11 6 4.6934 -4.4052 3.7837 12 7 5.5680 -3.3202 3.3181 13 6 6.7370 -3.0664 3.9389 14 8 7.4526 -2.1712 3.5419 15 6 7.1552 -3.8947 5.1263 16 1 6.8999 -4.9395 4.9484 17 7 8.6057 -3.7717 5.3228 18 6 6.4271 -3.3976 6.3767 19 6 6.7550 -4.3151 7.5565 20 6 6.0264 -3.8183 8.8068 21 6 6.3498 -4.7216 9.9688 22 1 7.0088 -5.5659 9.8295 23 6 5.8037 -4.4709 11.2098 24 7 5.0009 -3.4431 11.3794 25 14 6.2041 -5.5910 12.6501 26 1 7.1232 -6.6668 12.1998 27 1 6.8554 -4.8009 13.7255 28 1 4.9514 -6.1959 13.1697 29 6 5.1468 -2.5213 2.1592 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.4621 -0.7387 1.9895 38 1 1.7951 -2.7400 2.9314 39 1 2.7849 -3.8382 1.9404 40 1 3.3313 -3.1127 4.8548 41 1 2.6074 -4.6384 4.2901 42 1 4.6408 -5.1840 3.0228 43 1 5.0897 -4.8221 4.7096 44 1 8.8679 -2.8118 5.4896 45 1 8.9209 -4.3682 6.0732 46 1 5.3518 -3.4054 6.1983 47 1 6.7501 -2.3821 6.6056 48 1 6.4320 -5.3306 7.3276 49 1 7.8303 -4.3073 7.7349 50 1 6.3490 -2.8026 9.0357 51 1 4.9512 -3.8264 8.6280 52 1 4.6170 -3.2664 12.2524 53 1 5.8423 -1.6948 2.0130 54 1 5.1328 -3.1490 1.2682 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595949544.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:56 Heat of formation + Delta-G solvation = -129.059687 kcal Electronic energy + Delta-G solvation = -30437.548788 eV Core-core repulsion = 26406.708744 eV Total energy + Delta-G solvation = -4030.840045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.77928 -40.80529 -38.40403 -37.42749 -36.97365 -35.28923 -34.30508 -32.98815 -32.53573 -31.87062 -29.47300 -28.11693 -27.58205 -26.08397 -25.35826 -23.81548 -22.78385 -21.91998 -21.77217 -21.16595 -19.85664 -18.81852 -18.44136 -17.98759 -17.29760 -17.04322 -16.55075 -16.45148 -16.20509 -16.00360 -15.72357 -15.36350 -15.21563 -15.05273 -14.99142 -14.62228 -14.40188 -14.25779 -14.04822 -13.83910 -13.63845 -13.54915 -13.46213 -13.16206 -13.08056 -12.94607 -12.59805 -12.54915 -12.37606 -12.33347 -12.30569 -12.07313 -12.00083 -11.92006 -11.67483 -11.48195 -11.40160 -11.22107 -10.87689 -10.66694 -10.54653 -10.15280 -9.76104 -9.64571 -8.18891 -6.29294 1.40790 1.42170 1.51875 1.54590 1.55020 1.76451 2.27598 2.42011 3.14917 3.36889 3.53874 3.66391 3.73390 3.78290 3.92269 3.97127 4.01600 4.04284 4.11847 4.17537 4.21573 4.31044 4.39452 4.49644 4.52828 4.59963 4.71114 4.73247 4.74129 4.78971 4.81050 4.89125 4.92374 5.00342 5.02267 5.05884 5.07126 5.19850 5.25361 5.25784 5.30578 5.36749 5.45981 5.53233 5.54775 5.75678 5.87478 6.02715 6.26146 6.33527 6.48359 6.50346 6.88833 7.10540 7.20425 7.40315 8.92798 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.002223 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.234596 B =12593.634035 C =13753.650277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.132 3.868 3 C -0.162 4.162 4 N -0.712 5.712 5 C 0.524 3.476 6 O -0.581 6.581 7 C -0.115 4.115 8 H 0.102 0.898 9 C -0.101 4.101 10 C -0.132 4.132 11 C 0.091 3.909 12 N -0.607 5.607 13 C 0.520 3.480 14 O -0.577 6.577 15 C 0.086 3.914 16 H 0.123 0.877 17 N -0.834 5.834 18 C -0.133 4.133 19 C -0.094 4.094 20 C 0.026 3.974 21 C -0.538 4.538 22 H 0.063 0.937 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.961 3.039 26 H -0.260 1.260 27 H -0.283 1.283 28 H -0.278 1.278 29 C 0.136 3.864 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.415 0.585 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.344 0.656 45 H 0.358 0.642 46 H 0.076 0.924 47 H 0.045 0.955 48 H 0.067 0.933 49 H 0.053 0.947 50 H -0.018 1.018 51 H -0.004 1.004 52 H 0.262 0.738 53 H 0.063 0.937 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 1.355 -21.663 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 C -0.221 4.221 4 N -0.364 5.364 5 C 0.310 3.690 6 O -0.461 6.461 7 C -0.137 4.137 8 H 0.120 0.880 9 C -0.139 4.139 10 C -0.170 4.170 11 C -0.031 4.031 12 N -0.340 5.340 13 C 0.309 3.691 14 O -0.455 6.455 15 C -0.029 4.029 16 H 0.140 0.860 17 N -0.366 5.366 18 C -0.173 4.173 19 C -0.132 4.132 20 C -0.011 4.011 21 C -0.577 4.577 22 H 0.081 0.919 23 C -0.199 4.199 24 N -0.574 5.574 25 Si 0.786 3.214 26 H -0.184 1.184 27 H -0.209 1.209 28 H -0.204 1.204 29 C 0.013 3.987 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.252 0.748 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.158 0.842 45 H 0.173 0.827 46 H 0.095 0.905 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.001 0.999 51 H 0.015 0.985 52 H 0.071 0.929 53 H 0.081 0.919 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.677 1.664 -23.215 26.040 hybrid contribution -0.092 0.463 2.235 2.284 sum -11.769 2.127 -20.980 24.149 Atomic orbital electron populations 1.22022 0.91478 1.03356 1.04085 1.21030 0.95862 0.92473 0.87878 1.22173 1.00285 0.96285 1.03309 1.46061 1.17065 1.55663 1.17636 1.20640 0.81565 0.77913 0.88845 1.90704 1.57313 1.61434 1.36630 1.21630 0.96339 0.99424 0.96316 0.87971 1.21531 0.98317 0.95462 0.98573 1.22016 0.95738 1.01719 0.97534 1.22293 0.90458 0.88696 1.01643 1.48133 1.19929 1.34718 1.31195 1.20973 0.80431 0.83683 0.84000 1.90641 1.53733 1.34033 1.67142 1.21405 0.89840 1.00504 0.91161 0.85962 1.58703 1.10875 1.14608 1.52447 1.22250 1.01433 0.99302 0.94306 1.21435 0.99816 0.98558 0.93346 1.18982 0.94719 0.94613 0.92836 1.21751 1.28214 1.12503 0.95184 0.91922 1.25960 0.95015 0.96876 1.02082 1.70100 1.33082 1.29955 1.24283 0.85451 0.78227 0.78923 0.78778 1.18422 1.20898 1.20373 1.21139 0.94324 0.95589 0.87665 0.90826 0.89940 0.91420 0.91401 0.94998 0.90215 0.91488 0.74822 0.88503 0.90409 0.91794 0.87441 0.88996 0.88567 0.84246 0.82660 0.90520 0.93646 0.91459 0.92870 0.99933 0.98531 0.92902 0.91869 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.38 71.98 0.68 -0.27 16 2 C 0.13 1.67 3.18 44.99 0.14 1.81 16 3 C -0.16 -2.21 9.48 71.98 0.68 -1.52 16 4 N -0.71 -9.31 4.96 -442.54 -2.20 -11.51 16 5 C 0.52 10.50 7.12 87.66 0.62 11.12 16 6 O -0.58 -16.83 15.58 -3.03 -0.05 -16.88 16 7 C -0.11 -2.04 2.68 -11.46 -0.03 -2.08 16 8 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 9 C -0.10 -1.15 5.07 30.62 0.16 -0.99 16 10 C -0.13 -1.70 6.10 30.82 0.19 -1.51 16 11 C 0.09 1.48 5.79 86.51 0.50 1.98 16 12 N -0.61 -14.36 2.97 -818.05 -2.43 -16.79 16 13 C 0.52 15.78 6.95 87.66 0.61 16.39 16 14 O -0.58 -22.26 15.66 -3.05 -0.05 -22.31 16 15 C 0.09 2.33 2.34 44.17 0.10 2.43 16 16 H 0.12 2.77 6.78 -2.38 -0.02 2.76 16 17 N -0.83 -23.57 8.94 -171.81 -1.54 -25.11 16 18 C -0.13 -4.06 4.52 30.60 0.14 -3.92 16 19 C -0.09 -3.38 4.92 30.60 0.15 -3.23 16 20 C 0.03 1.27 4.97 29.85 0.15 1.41 16 21 C -0.54 -29.22 9.11 25.60 0.23 -28.98 16 22 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 23 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 24 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 25 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 29 C 0.14 3.32 5.06 86.36 0.44 3.76 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 1.16 7.58 -2.39 -0.02 1.14 16 34 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.41 3.04 8.01 -92.71 -0.74 2.29 16 38 H 0.10 0.64 7.54 -2.38 -0.02 0.62 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.60 4.85 -2.39 -0.01 1.59 16 44 H 0.34 10.43 8.58 -89.69 -0.77 9.66 16 45 H 0.36 9.12 7.55 -89.69 -0.68 8.44 16 46 H 0.08 2.19 6.99 -2.39 -0.02 2.17 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.05 1.87 6.87 -2.39 -0.02 1.85 16 50 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 51 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 52 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 53 H 0.06 1.99 7.01 -2.39 -0.02 1.98 16 54 H 0.07 1.81 7.96 -2.39 -0.02 1.79 16 Total: -1.00 -76.58 422.29 -0.01 -76.59 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -1.29 Total: 29.37 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.22 Total: -3.23 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -5.87 Total: -108.51 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.10 Total: -39.19 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -76.58 -0.01 -76.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595949544.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.471 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds