Wall clock time and date at job start Sat Apr 11 2020 05:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46775 * 2 1 4 4 N 1.46493 * 109.47222 * 119.99821 * 2 1 3 5 5 C 1.34784 * 119.99864 * 155.00033 * 4 2 1 6 6 O 1.21283 * 119.99649 * 359.72839 * 5 4 2 7 7 C 1.50694 * 119.99988 * 179.72721 * 5 4 2 8 8 H 1.09002 * 109.49853 * 300.06318 * 7 5 4 9 9 C 1.53044 * 109.49629 * 60.16332 * 7 5 4 10 10 C 1.53051 * 109.53514 * 181.31406 * 9 7 5 11 11 C 1.53185 * 109.31456 * 298.63542 * 10 9 7 12 12 N 1.46931 * 108.77741 * 54.63272 * 11 10 9 13 13 C 1.34782 * 120.62929 * 126.36813 * 12 11 10 14 14 O 1.21284 * 119.99678 * 180.02562 * 13 12 11 15 15 C 1.50698 * 119.99890 * 0.02591 * 13 12 11 16 16 H 1.08998 * 109.47195 * 320.00045 * 15 13 12 17 17 N 1.46906 * 109.46933 * 199.99807 * 15 13 12 18 18 C 1.52999 * 109.47250 * 80.00178 * 15 13 12 19 19 C 1.52999 * 109.47248 * 184.99724 * 18 15 13 20 20 C 1.52999 * 109.47145 * 179.97438 * 19 18 15 21 21 C 1.50701 * 109.46969 * 179.97438 * 20 19 18 22 22 H 1.07994 * 120.00103 * 0.02562 * 21 20 19 23 23 C 1.37879 * 119.99567 * 179.97438 * 21 20 19 24 24 N 1.31509 * 120.00451 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99617 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47115 * 60.00216 * 25 23 21 27 27 H 1.48502 * 109.47131 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46942 * 300.00263 * 25 23 21 29 29 C 1.46929 * 118.73877 * 306.39418 * 12 11 10 30 30 H 1.08999 * 109.47237 * 299.99466 * 1 2 3 31 31 H 1.08999 * 109.47829 * 59.99628 * 1 2 3 32 32 H 1.09003 * 109.47300 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47237 * 240.00534 * 2 1 3 34 34 H 1.09003 * 109.47308 * 299.99973 * 3 2 1 35 35 H 1.09005 * 109.47224 * 60.00408 * 3 2 1 36 36 H 1.09008 * 109.47230 * 180.02562 * 3 2 1 37 37 H 0.97000 * 120.00740 * 334.72725 * 4 2 1 38 38 H 1.08995 * 109.46115 * 301.32995 * 9 7 5 39 39 H 1.08993 * 109.46191 * 61.30024 * 9 7 5 40 40 H 1.08993 * 109.49703 * 178.68006 * 10 9 7 41 41 H 1.09005 * 109.49069 * 58.58520 * 10 9 7 42 42 H 1.08999 * 109.59047 * 294.84728 * 11 10 9 43 43 H 1.08997 * 109.70817 * 174.49097 * 11 10 9 44 44 H 1.00898 * 110.99934 * 176.04945 * 17 15 13 45 45 H 1.00901 * 110.99843 * 300.00040 * 17 15 13 46 46 H 1.09006 * 109.46641 * 304.99797 * 18 15 13 47 47 H 1.09001 * 109.47216 * 64.99364 * 18 15 13 48 48 H 1.08994 * 109.47442 * 299.99990 * 19 18 15 49 49 H 1.09005 * 109.46586 * 60.00249 * 19 18 15 50 50 H 1.09002 * 109.47617 * 300.00413 * 20 19 18 51 51 H 1.09001 * 109.46818 * 59.99947 * 20 19 18 52 52 H 0.96999 * 120.00604 * 179.97438 * 24 23 21 53 53 H 1.08994 * 109.58545 * 293.81719 * 29 12 11 54 54 H 1.09005 * 109.70052 * 173.46197 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 3.2403 -1.2591 1.1943 6 8 3.9336 -1.2032 0.2007 7 6 3.7452 -1.9641 2.4268 8 1 3.7827 -1.2608 3.2586 9 6 2.8042 -3.1195 2.7758 10 6 3.2980 -3.8158 4.0461 11 6 4.6967 -4.3893 3.7985 12 7 5.5729 -3.3102 3.3224 13 6 6.7429 -3.0527 3.9400 14 8 7.4571 -2.1588 3.5376 15 6 7.1637 -3.8755 5.1303 16 1 6.2970 -4.0702 5.7620 17 7 8.1759 -3.1404 5.9005 18 6 7.7532 -5.2031 4.6500 19 6 8.0653 -6.0892 5.8575 20 6 8.6543 -7.4171 5.3771 21 6 8.9623 -8.2896 6.5666 22 1 8.7580 -7.9329 7.5653 23 6 9.5040 -9.5437 6.3797 24 7 9.7523 -9.9783 5.1636 25 14 9.8851 -10.6256 7.8542 26 1 8.6360 -10.8839 8.6146 27 1 10.4568 -11.9143 7.3879 28 1 10.8659 -9.9382 8.7321 29 6 5.1490 -2.5167 2.1608 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9564 0.8901 36 1 3.1300 1.4426 -0.0005 37 1 1.4639 -0.7352 1.9908 38 1 1.7991 -2.7319 2.9415 39 1 2.7865 -3.8346 1.9534 40 1 2.6146 -4.6237 4.3073 41 1 3.3396 -3.0954 4.8631 42 1 4.6416 -5.1746 3.0446 43 1 5.0948 -4.8007 4.7261 44 1 8.4275 -3.6426 6.7388 45 1 8.9899 -2.9477 5.3364 46 1 7.0338 -5.7079 4.0051 47 1 8.6702 -5.0128 4.0922 48 1 8.7846 -5.5845 6.5024 49 1 7.1482 -6.2795 6.4152 50 1 7.9347 -7.9218 4.7324 51 1 9.5712 -7.2271 4.8192 52 1 10.1337 -10.8604 5.0322 53 1 5.1307 -3.1492 1.2733 54 1 5.8436 -1.6908 2.0066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595949546.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:59 Heat of formation + Delta-G solvation = -129.133736 kcal Electronic energy + Delta-G solvation = -30172.320406 eV Core-core repulsion = 26141.477150 eV Total energy + Delta-G solvation = -4030.843256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77508 -40.80464 -38.42920 -37.41885 -36.97712 -35.29590 -34.30386 -33.00570 -32.54348 -31.86930 -29.48095 -28.10845 -27.58722 -26.09223 -25.34356 -23.87824 -22.75535 -21.99048 -21.70517 -21.09209 -19.96447 -18.79769 -18.44681 -18.00001 -17.28276 -17.01170 -16.53300 -16.50835 -16.09296 -16.06612 -15.72633 -15.37174 -15.25870 -15.18394 -14.77128 -14.72700 -14.39140 -14.19639 -14.03124 -13.82686 -13.70813 -13.58788 -13.48176 -13.15907 -13.07134 -12.90027 -12.61488 -12.53095 -12.42995 -12.36198 -12.30128 -12.05307 -11.98626 -11.90837 -11.66037 -11.49033 -11.40377 -11.25912 -10.87686 -10.66893 -10.54353 -10.14735 -9.76968 -9.65509 -8.18872 -6.30337 1.41451 1.44138 1.51558 1.52652 1.55959 1.74981 2.28058 2.41871 3.14550 3.36701 3.54782 3.63550 3.74675 3.78139 3.91317 3.96125 4.01212 4.05370 4.12476 4.17625 4.21525 4.31614 4.38567 4.49486 4.51983 4.61454 4.71944 4.74120 4.75241 4.78424 4.81388 4.91971 4.93091 5.00350 5.01540 5.06511 5.07697 5.18849 5.24691 5.25780 5.31505 5.35765 5.45795 5.52954 5.53893 5.73683 5.86009 6.01657 6.24519 6.32948 6.48225 6.52140 6.87630 7.10163 7.22474 7.39466 8.92486 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023152 B = 0.001903 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.095730 B =14709.968586 C =15195.483484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.710 5.710 5 C 0.521 3.479 6 O -0.584 6.584 7 C -0.110 4.110 8 H 0.112 0.888 9 C -0.104 4.104 10 C -0.126 4.126 11 C 0.087 3.913 12 N -0.606 5.606 13 C 0.520 3.480 14 O -0.577 6.577 15 C 0.088 3.912 16 H 0.127 0.873 17 N -0.832 5.832 18 C -0.136 4.136 19 C -0.092 4.092 20 C 0.023 3.977 21 C -0.541 4.541 22 H 0.065 0.935 23 C -0.003 4.003 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.263 1.263 27 H -0.287 1.287 28 H -0.268 1.268 29 C 0.133 3.867 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.416 0.584 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.358 0.642 45 H 0.344 0.656 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.069 0.931 50 H -0.007 1.007 51 H -0.019 1.019 52 H 0.262 0.738 53 H 0.064 0.936 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.491 19.285 -4.213 32.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 C -0.220 4.220 4 N -0.362 5.362 5 C 0.308 3.692 6 O -0.464 6.464 7 C -0.132 4.132 8 H 0.130 0.870 9 C -0.142 4.142 10 C -0.164 4.164 11 C -0.034 4.034 12 N -0.339 5.339 13 C 0.309 3.691 14 O -0.456 6.456 15 C -0.027 4.027 16 H 0.145 0.855 17 N -0.364 5.364 18 C -0.176 4.176 19 C -0.130 4.130 20 C -0.014 4.014 21 C -0.579 4.579 22 H 0.083 0.917 23 C -0.200 4.200 24 N -0.576 5.576 25 Si 0.789 3.211 26 H -0.188 1.188 27 H -0.213 1.213 28 H -0.193 1.193 29 C 0.010 3.990 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.174 0.826 45 H 0.157 0.843 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.011 0.989 51 H 0.000 1.000 52 H 0.071 0.929 53 H 0.083 0.917 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.139 20.237 -5.155 32.681 hybrid contribution 1.411 -1.607 0.116 2.142 sum -23.728 18.630 -5.038 30.585 Atomic orbital electron populations 1.22015 0.91359 1.03327 1.04164 1.21021 0.95936 0.92515 0.87880 1.22169 1.00226 0.96193 1.03391 1.46015 1.17032 1.55664 1.17519 1.20725 0.81614 0.77895 0.88981 1.90719 1.57589 1.61357 1.36761 1.21602 0.95745 0.99505 0.96388 0.86985 1.21561 0.98586 0.95409 0.98634 1.21923 0.94839 1.01880 0.97714 1.22225 0.91131 0.88675 1.01397 1.48121 1.19886 1.34945 1.30945 1.20977 0.80581 0.83298 0.84247 1.90640 1.53958 1.34072 1.66884 1.21399 0.98036 0.90126 0.93159 0.85511 1.58724 1.16696 1.50544 1.10428 1.22260 1.00737 0.95314 0.99296 1.21419 1.00594 0.94822 0.96128 1.19004 0.94136 0.92876 0.95371 1.21698 1.41320 1.00754 0.94125 0.91652 1.26006 0.95543 0.99802 0.98695 1.70098 1.45125 1.19490 1.22840 0.85515 0.78977 0.77503 0.79140 1.18769 1.21280 1.19304 1.21142 0.94874 0.95545 0.87456 0.90480 0.90096 0.91520 0.91832 0.90378 0.91126 0.95106 0.74631 0.87849 0.91389 0.87327 0.90272 0.90571 0.88294 0.82630 0.84318 0.91074 0.93839 0.92616 0.91245 0.98884 1.00043 0.92918 0.91745 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.38 71.98 0.68 -0.06 16 2 C 0.13 1.52 3.19 44.99 0.14 1.67 16 3 C -0.16 -1.98 9.48 71.98 0.68 -1.30 16 4 N -0.71 -8.07 4.96 -442.55 -2.20 -10.27 16 5 C 0.52 9.97 7.12 87.65 0.62 10.59 16 6 O -0.58 -17.10 15.58 -3.04 -0.05 -17.14 16 7 C -0.11 -1.77 2.68 -11.46 -0.03 -1.80 16 8 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 9 C -0.10 -0.99 5.08 30.63 0.16 -0.84 16 10 C -0.13 -1.20 6.08 30.67 0.19 -1.01 16 11 C 0.09 1.45 5.59 86.36 0.48 1.93 16 12 N -0.61 -14.49 2.97 -818.90 -2.43 -16.93 16 13 C 0.52 15.82 6.95 87.66 0.61 16.43 16 14 O -0.58 -22.31 15.67 -3.04 -0.05 -22.36 16 15 C 0.09 2.37 2.35 44.17 0.10 2.47 16 16 H 0.13 2.76 6.54 -2.39 -0.02 2.75 16 17 N -0.83 -23.13 8.94 -171.80 -1.54 -24.66 16 18 C -0.14 -4.35 4.61 30.59 0.14 -4.21 16 19 C -0.09 -3.39 4.92 30.59 0.15 -3.24 16 20 C 0.02 1.18 4.97 29.85 0.15 1.33 16 21 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 22 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 23 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 24 N -0.94 -56.74 13.29 21.45 0.28 -56.45 16 25 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 C 0.13 3.31 5.06 86.36 0.44 3.74 16 30 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.08 0.30 8.14 -2.39 -0.02 0.29 16 32 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 1.08 7.57 -2.39 -0.02 1.06 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.42 1.88 8.02 -92.71 -0.74 1.14 16 38 H 0.10 0.36 7.54 -2.39 -0.02 0.34 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.59 16 41 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.10 1.59 5.18 -2.39 -0.01 1.58 16 44 H 0.36 8.94 7.55 -89.70 -0.68 8.26 16 45 H 0.34 10.41 8.58 -89.69 -0.77 9.64 16 46 H 0.07 2.20 7.20 -2.38 -0.02 2.18 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.97 6.87 -2.39 -0.02 1.96 16 49 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 50 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 51 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 52 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 53 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 54 H 0.06 2.04 7.01 -2.38 -0.02 2.02 16 Total: -1.00 -79.32 422.49 -0.03 -79.36 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -1.29 Total: 26.58 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.20 Total: -3.56 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -5.88 Total: -108.31 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.09 Total: -39.50 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -79.32 -0.03 -79.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595949546.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.778 kcal (2) G-P(sol) polarization free energy of solvation -79.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds