Wall clock time and date at job start Sat Apr 11 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47456 * 2 1 4 4 O 1.21283 * 119.99427 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00147 * 180.02562 * 3 2 1 6 6 C 1.47425 * 125.64822 * 359.94987 * 5 3 2 7 7 C 1.54904 * 104.83311 * 204.16735 * 6 5 3 8 8 C 1.55164 * 101.58098 * 322.99394 * 7 6 5 9 9 H 1.08999 * 110.86802 * 277.06524 * 8 7 6 10 10 C 1.50696 * 110.72054 * 153.86636 * 8 7 6 11 11 O 1.21284 * 120.00109 * 246.47555 * 10 8 7 12 12 N 1.34777 * 120.00137 * 66.47340 * 10 8 7 13 13 C 1.46506 * 119.99873 * 179.97438 * 12 10 8 14 14 H 1.08999 * 109.46950 * 325.00285 * 13 12 10 15 15 C 1.52995 * 109.46824 * 85.00531 * 13 12 10 16 16 C 1.53000 * 109.46808 * 205.00186 * 13 12 10 17 17 C 1.53000 * 109.47214 * 65.00388 * 16 13 12 18 18 C 1.53003 * 109.47061 * 179.97438 * 17 16 13 19 19 C 1.53000 * 109.47061 * 179.97438 * 18 17 16 20 20 N 1.46493 * 109.47161 * 179.97438 * 19 18 17 21 21 C 1.36936 * 120.00082 * 179.97438 * 20 19 18 22 22 H 1.08005 * 120.00277 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00212 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99580 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00106 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47114 * 59.99620 * 25 23 21 27 27 H 1.48494 * 109.46887 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46911 * 299.99514 * 25 23 21 29 29 C 1.47022 * 125.64581 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46877 * 300.00355 * 1 2 3 32 32 H 1.09000 * 109.46865 * 59.99850 * 1 2 3 33 33 H 1.08996 * 109.47264 * 239.99279 * 2 1 3 34 34 H 1.09004 * 109.47056 * 119.99663 * 2 1 3 35 35 H 1.08996 * 110.36900 * 323.00976 * 6 5 3 36 36 H 1.09002 * 110.36343 * 85.21861 * 6 5 3 37 37 H 1.08995 * 111.00398 * 204.91844 * 7 6 5 38 38 H 1.09001 * 111.00339 * 81.06300 * 7 6 5 39 39 H 0.96995 * 120.00018 * 0.27749 * 12 10 8 40 40 H 1.09002 * 109.46959 * 179.97438 * 15 13 12 41 41 H 1.09003 * 109.47335 * 299.99547 * 15 13 12 42 42 H 1.09002 * 109.47311 * 59.99668 * 15 13 12 43 43 H 1.09004 * 109.46768 * 185.00053 * 16 13 12 44 44 H 1.09003 * 109.47442 * 305.00120 * 16 13 12 45 45 H 1.08994 * 109.47015 * 299.99550 * 17 16 13 46 46 H 1.09003 * 109.47135 * 59.99545 * 17 16 13 47 47 H 1.08994 * 109.47113 * 299.99827 * 18 17 16 48 48 H 1.08995 * 109.46911 * 59.99935 * 18 17 16 49 49 H 1.09004 * 109.46944 * 300.00428 * 19 18 17 50 50 H 1.09003 * 109.47135 * 59.99881 * 19 18 17 51 51 H 0.97001 * 119.99893 * 0.02562 * 20 19 18 52 52 H 0.97006 * 119.99777 * 179.97438 * 24 23 21 53 53 H 1.08995 * 109.88061 * 59.48943 * 29 5 3 54 54 H 1.08995 * 109.88362 * 298.32243 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.4211 0.6462 -0.0001 7 6 5.6534 1.3577 0.6121 8 6 5.5101 2.7876 0.0269 9 1 5.9247 2.8384 -0.9799 10 6 6.1718 3.8002 0.9256 11 8 5.5003 4.6281 1.5042 12 7 7.5099 3.7860 1.0865 13 6 8.1531 4.7709 1.9598 14 1 7.6199 5.7192 1.8926 15 6 8.1213 4.2690 3.4047 16 6 9.6053 4.9701 1.5210 17 6 9.6350 5.5890 0.1221 18 6 11.0872 5.7887 -0.3165 19 6 11.1169 6.4071 -1.7156 20 7 12.5073 6.5989 -2.1353 21 6 12.7837 7.1415 -3.3618 22 1 11.9766 7.4277 -4.0200 23 6 14.1012 7.3228 -3.7597 24 7 15.0847 6.9736 -2.9578 25 14 14.4781 8.0636 -5.4326 26 1 13.8877 9.4237 -5.5160 27 1 15.9492 8.1510 -5.6150 28 1 13.8971 7.2056 -6.4962 29 6 3.9816 2.9982 -0.0011 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.1298 -0.2049 0.6154 36 1 4.6355 0.3214 -1.0182 37 1 6.5799 0.8902 0.2790 38 1 5.5948 1.3733 1.7005 39 1 8.0474 3.1265 0.6207 40 1 8.6003 5.0016 4.0544 41 1 7.0867 4.1271 3.7174 42 1 8.6545 3.3207 3.4719 43 1 10.1090 5.6345 2.2230 44 1 10.1148 4.0067 1.5030 45 1 9.1313 4.9246 -0.5799 46 1 9.1254 6.5524 0.1401 47 1 11.5906 6.4533 0.3856 48 1 11.5970 4.8255 -0.3344 49 1 10.6135 5.7421 -2.4175 50 1 10.6069 7.3702 -1.6982 51 1 13.2322 6.3408 -1.5446 52 1 16.0054 7.0999 -3.2360 53 1 3.6681 3.5550 0.8819 54 1 3.6984 3.5400 -0.9035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176057789.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:55 Heat of formation + Delta-G solvation = -114.832626 kcal Electronic energy + Delta-G solvation = -29056.811572 eV Core-core repulsion = 25026.588459 eV Total energy + Delta-G solvation = -4030.223113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.60551 -40.57652 -38.52647 -37.80738 -36.79932 -34.78618 -33.96736 -33.27461 -32.48235 -31.35475 -30.12904 -28.80719 -26.54565 -25.88813 -24.19757 -23.61623 -23.25613 -22.02698 -21.66562 -21.03970 -20.17442 -19.11948 -18.68662 -18.20498 -17.29451 -16.89575 -16.67220 -16.53852 -16.26816 -16.10896 -15.57170 -15.35630 -15.25527 -14.95885 -14.66481 -14.54616 -14.28376 -14.13306 -13.95716 -13.86045 -13.29999 -13.23970 -13.17081 -13.01088 -12.93520 -12.85581 -12.83382 -12.60467 -12.44631 -12.38784 -12.23336 -12.19397 -12.08051 -11.87777 -11.83758 -11.79964 -11.47404 -11.38366 -10.97082 -10.92720 -10.83381 -10.07385 -9.72760 -9.00985 -7.96344 -5.25453 1.46879 1.50025 1.56369 1.57851 1.60021 1.82044 2.30971 2.55596 3.25697 3.36936 3.46488 3.60858 3.72253 3.80518 4.05244 4.07394 4.14273 4.16520 4.22176 4.22716 4.28345 4.33014 4.37102 4.43342 4.59398 4.61833 4.66107 4.71508 4.77035 4.80590 4.85656 4.89125 4.93616 4.95266 4.98361 5.00533 5.03670 5.04497 5.13447 5.14941 5.22032 5.28418 5.33315 5.35290 5.46268 5.46347 5.54461 5.61154 6.26506 6.45958 6.58458 7.10842 7.26811 7.32401 8.09376 8.32685 9.26915 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.001664 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.670796 B =16818.344701 C =18054.241910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.511 3.489 4 O -0.598 6.598 5 N -0.622 5.622 6 C 0.094 3.906 7 C -0.113 4.113 8 C -0.115 4.115 9 H 0.139 0.861 10 C 0.522 3.478 11 O -0.587 6.587 12 N -0.704 5.704 13 C 0.143 3.857 14 H 0.062 0.938 15 C -0.156 4.156 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.112 4.112 19 C 0.147 3.853 20 N -0.749 5.749 21 C -0.253 4.253 22 H 0.073 0.927 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.975 3.025 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.276 1.276 29 C 0.116 3.884 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.417 0.583 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.020 0.980 50 H 0.010 0.990 51 H 0.374 0.626 52 H 0.252 0.748 53 H 0.051 0.949 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.096 -22.387 11.344 33.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.302 3.698 4 O -0.479 6.479 5 N -0.356 5.356 6 C -0.027 4.027 7 C -0.151 4.151 8 C -0.137 4.137 9 H 0.157 0.843 10 C 0.309 3.691 11 O -0.467 6.467 12 N -0.356 5.356 13 C 0.038 3.962 14 H 0.080 0.920 15 C -0.214 4.214 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.150 4.150 19 C 0.021 3.979 20 N -0.391 5.391 21 C -0.385 4.385 22 H 0.091 0.909 23 C -0.266 4.266 24 N -0.619 5.619 25 Si 0.803 3.197 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.202 1.202 29 C -0.008 4.008 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.038 0.962 50 H 0.028 0.972 51 H 0.206 0.794 52 H 0.061 0.939 53 H 0.069 0.931 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.093 -21.267 11.599 33.468 hybrid contribution 0.752 0.954 -0.854 1.485 sum -22.341 -20.313 10.745 32.050 Atomic orbital electron populations 1.21561 0.93766 1.02761 1.01621 1.21682 0.97808 0.90539 1.06756 1.21458 0.80216 0.93331 0.74753 1.90701 1.55928 1.48863 1.52402 1.48706 1.05822 1.08257 1.72800 1.22737 0.85210 0.91232 1.03479 1.22880 1.00461 0.90744 1.00993 1.22323 0.93695 0.96095 1.01558 0.84347 1.20634 0.82702 0.84529 0.81283 1.90720 1.64560 1.40920 1.50540 1.45952 1.06378 1.35174 1.48131 1.20941 0.93310 0.91888 0.90016 0.92008 1.22099 1.01437 1.02685 0.95192 1.21834 0.94277 1.02870 0.96327 1.21430 0.94830 1.00922 0.97149 1.21598 0.97811 1.00700 0.94883 1.20867 0.85340 0.96616 0.95075 1.42611 1.03075 1.75507 1.17937 1.19629 0.92001 1.32545 0.94330 0.90939 1.25584 0.95498 1.03224 1.02315 1.69807 0.98548 1.55210 1.38290 0.85199 0.76416 0.78429 0.79639 1.20589 1.21837 1.20220 1.21626 0.91949 0.85643 1.01537 0.89193 0.93960 0.93773 0.86035 0.86284 0.87445 0.88167 0.84961 0.90759 0.74554 0.90943 0.94152 0.90617 0.89915 0.89260 0.91131 0.93081 0.92677 0.91542 0.96216 0.97242 0.79394 0.93896 0.93090 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.95 16 2 C -0.13 -1.13 5.43 29.85 0.16 -0.96 16 3 C 0.51 9.85 7.85 87.66 0.69 10.54 16 4 O -0.60 -18.27 16.31 -3.04 -0.05 -18.32 16 5 N -0.62 -9.44 3.33 -811.81 -2.70 -12.14 16 6 C 0.09 0.41 6.69 86.85 0.58 0.99 16 7 C -0.11 -0.50 6.52 31.99 0.21 -0.29 16 8 C -0.12 -1.34 3.34 -10.35 -0.03 -1.38 16 9 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 10 C 0.52 9.57 7.10 87.66 0.62 10.19 16 11 O -0.59 -17.09 15.08 -3.04 -0.05 -17.14 16 12 N -0.70 -9.40 4.53 -442.53 -2.01 -11.40 16 13 C 0.14 2.34 2.57 44.99 0.12 2.46 16 14 H 0.06 1.38 7.58 -2.39 -0.02 1.37 16 15 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 16 C -0.12 -1.77 4.75 30.59 0.15 -1.63 16 17 C -0.11 -2.24 5.10 30.60 0.16 -2.08 16 18 C -0.11 -3.26 5.33 30.60 0.16 -3.10 16 19 C 0.15 5.85 6.26 86.38 0.54 6.39 16 20 N -0.75 -38.61 5.60 -343.45 -1.92 -40.53 16 21 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 24 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 25 Si 0.97 46.12 29.55 68.60 2.03 48.14 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 C 0.12 2.28 6.30 86.73 0.55 2.83 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 31 H 0.04 0.65 8.10 -2.38 -0.02 0.63 16 32 H 0.04 0.66 8.10 -2.39 -0.02 0.65 16 33 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.12 0.43 7.85 -2.39 -0.02 0.41 16 35 H 0.11 -0.02 7.48 -2.39 -0.02 -0.04 16 36 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.07 0.51 8.04 -2.39 -0.02 0.49 16 39 H 0.42 2.95 8.60 -92.71 -0.80 2.16 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.36 7.75 -2.39 -0.02 1.34 16 46 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.37 20.26 7.67 -92.71 -0.71 19.55 16 52 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 53 H 0.05 1.41 6.80 -2.39 -0.02 1.39 16 54 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -85.25 434.57 1.49 -83.76 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.64 Total: 22.47 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.55 Total: 4.06 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -6.35 Total: -122.97 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.10 Total: -35.46 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -85.25 1.49 -83.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176057789.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.074 kcal (2) G-P(sol) polarization free energy of solvation -85.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds