Wall clock time and date at job start Sat Apr 11 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.47417 * 125.64725 * 359.70014 * 5 3 2 7 7 C 1.55132 * 104.71956 * 155.81666 * 6 5 3 8 8 C 1.55154 * 101.48912 * 37.29182 * 7 6 5 9 9 H 1.08998 * 110.87621 * 82.76849 * 8 7 6 10 10 C 1.50696 * 110.71690 * 205.97127 * 8 7 6 11 11 O 1.21287 * 119.99837 * 113.52431 * 10 8 7 12 12 N 1.34780 * 120.00255 * 293.51653 * 10 8 7 13 13 C 1.46500 * 119.99956 * 180.02562 * 12 10 8 14 14 H 1.08996 * 109.47083 * 325.00594 * 13 12 10 15 15 C 1.53000 * 109.46962 * 85.00504 * 13 12 10 16 16 C 1.53000 * 109.46947 * 205.00163 * 13 12 10 17 17 C 1.52996 * 109.46974 * 65.00471 * 16 13 12 18 18 C 1.53007 * 109.47193 * 179.97438 * 17 16 13 19 19 C 1.53002 * 109.46913 * 179.97438 * 18 17 16 20 20 N 1.46507 * 109.46559 * 180.02562 * 19 18 17 21 21 C 1.36933 * 119.99697 * 180.02562 * 20 19 18 22 22 H 1.08006 * 120.00157 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00139 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99800 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00292 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46988 * 90.00166 * 25 23 21 27 27 H 1.48496 * 109.47319 * 210.00094 * 25 23 21 28 28 H 1.48503 * 109.47371 * 330.00064 * 25 23 21 29 29 C 1.47020 * 125.64476 * 179.97438 * 5 3 2 30 30 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.09004 * 110.36484 * 274.73852 * 6 5 3 36 36 H 1.08995 * 110.37495 * 37.06136 * 6 5 3 37 37 H 1.09003 * 111.18924 * 279.18444 * 7 6 5 38 38 H 1.09000 * 110.93740 * 155.28810 * 7 6 5 39 39 H 0.96993 * 119.99773 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.47039 * 299.99985 * 15 13 12 41 41 H 1.09000 * 109.47506 * 59.99773 * 15 13 12 42 42 H 1.09001 * 109.47276 * 179.97438 * 15 13 12 43 43 H 1.09003 * 109.46943 * 185.00412 * 16 13 12 44 44 H 1.08994 * 109.47262 * 305.00487 * 16 13 12 45 45 H 1.09003 * 109.47238 * 299.99761 * 17 16 13 46 46 H 1.09000 * 109.47767 * 59.99819 * 17 16 13 47 47 H 1.08995 * 109.46816 * 299.99772 * 18 17 16 48 48 H 1.08997 * 109.46568 * 59.99841 * 18 17 16 49 49 H 1.08995 * 109.47288 * 299.99599 * 19 18 17 50 50 H 1.08994 * 109.47158 * 60.00214 * 19 18 17 51 51 H 0.96996 * 120.00343 * 359.97438 * 20 19 18 52 52 H 0.96998 * 119.99738 * 180.02562 * 24 23 21 53 53 H 1.08998 * 109.88454 * 300.44771 * 29 5 3 54 54 H 1.09007 * 109.87974 * 61.60923 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4210 0.6462 0.0074 7 6 5.6540 1.3574 -0.6093 8 6 5.5101 2.7876 -0.0251 9 1 5.9235 2.8391 0.9821 10 6 6.1728 3.7997 -0.9237 11 8 5.5019 4.6272 -1.5034 12 7 7.5111 3.7854 -1.0830 13 6 8.1553 4.7698 -1.9561 14 1 7.5053 4.9833 -2.8045 15 6 8.4097 6.0583 -1.1714 16 6 9.4862 4.2093 -2.4615 17 6 9.2225 2.9918 -3.3497 18 6 10.5534 2.4317 -3.8557 19 6 10.2896 1.2137 -4.7434 20 7 11.5640 0.6771 -5.2274 21 6 11.5780 -0.4211 -6.0453 22 1 10.6496 -0.8919 -6.3332 23 6 12.7855 -0.9292 -6.5043 24 7 13.9169 -0.3552 -6.1538 25 14 12.8047 -2.4277 -7.6194 26 1 12.7342 -1.9908 -9.0369 27 1 14.0581 -3.1928 -7.3990 28 1 11.6369 -3.2909 -7.3088 29 6 3.9816 2.9982 0.0001 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.6348 0.3280 1.0278 36 1 4.1310 -0.2080 -0.6043 37 1 5.5967 1.3724 -1.6978 38 1 6.5805 0.8903 -0.2754 39 1 8.0476 3.1235 -0.6196 40 1 7.4615 6.4576 -0.8112 41 1 9.0597 5.8448 -0.3229 42 1 8.8894 6.7906 -1.8209 43 1 10.0068 4.9739 -3.0383 44 1 10.1017 3.9130 -1.6122 45 1 8.7019 2.2272 -2.7730 46 1 8.6070 3.2881 -4.1991 47 1 11.0735 3.1964 -4.4326 48 1 11.1692 2.1355 -3.0066 49 1 9.7697 0.4492 -4.1662 50 1 9.6736 1.5096 -5.5925 51 1 12.3978 1.1001 -4.9691 52 1 14.7606 -0.7101 -6.4749 53 1 3.6691 3.5538 -0.8841 54 1 3.6971 3.5413 0.9014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176057791.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:04 Heat of formation + Delta-G solvation = -114.622745 kcal Electronic energy + Delta-G solvation = -29315.144400 eV Core-core repulsion = 25284.930388 eV Total energy + Delta-G solvation = -4030.214012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.60301 -40.57611 -38.51876 -37.80373 -36.79090 -34.77578 -33.96816 -33.27316 -32.48484 -31.33558 -30.11932 -28.80127 -26.54298 -25.88399 -24.19822 -23.63501 -23.24548 -22.01661 -21.64902 -21.03944 -20.17510 -19.11057 -18.68549 -18.17965 -17.32944 -16.91100 -16.67555 -16.52182 -16.26105 -16.01420 -15.62375 -15.36154 -15.25307 -14.96913 -14.64198 -14.52184 -14.36719 -14.07934 -13.90669 -13.84572 -13.33573 -13.24735 -13.16384 -13.01457 -12.92478 -12.87410 -12.82802 -12.60575 -12.47102 -12.33237 -12.25732 -12.13900 -12.08599 -11.86799 -11.85248 -11.78382 -11.46546 -11.37553 -10.97105 -10.92517 -10.83219 -10.07272 -9.72508 -8.99758 -7.95401 -5.24346 1.47754 1.49718 1.57312 1.58134 1.59999 1.82357 2.30927 2.56354 3.25790 3.38052 3.46290 3.61011 3.72640 3.81507 4.04692 4.08261 4.15336 4.16202 4.22219 4.22294 4.27014 4.31677 4.37097 4.44401 4.59275 4.62603 4.66876 4.71209 4.77094 4.80726 4.86180 4.90010 4.93778 4.95812 4.98629 5.01176 5.03895 5.04669 5.13635 5.15596 5.22125 5.28862 5.33453 5.34680 5.47452 5.47749 5.55724 5.61536 6.27594 6.44979 6.58613 7.10133 7.27055 7.33336 8.10686 8.33413 9.28099 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.002030 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.209721 B =13786.864933 C =16295.917220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.513 3.487 4 O -0.596 6.596 5 N -0.622 5.622 6 C 0.095 3.905 7 C -0.119 4.119 8 C -0.111 4.111 9 H 0.147 0.853 10 C 0.521 3.479 11 O -0.587 6.587 12 N -0.705 5.705 13 C 0.144 3.856 14 H 0.062 0.938 15 C -0.158 4.158 16 C -0.116 4.116 17 C -0.104 4.104 18 C -0.113 4.113 19 C 0.148 3.852 20 N -0.749 5.749 21 C -0.248 4.248 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.975 3.025 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.268 1.268 29 C 0.117 3.883 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.417 0.583 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.023 0.977 50 H 0.010 0.990 51 H 0.374 0.626 52 H 0.252 0.748 53 H 0.049 0.951 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.255 3.060 20.424 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.304 3.696 4 O -0.477 6.477 5 N -0.356 5.356 6 C -0.026 4.026 7 C -0.157 4.157 8 C -0.132 4.132 9 H 0.164 0.836 10 C 0.308 3.692 11 O -0.467 6.467 12 N -0.357 5.357 13 C 0.039 3.961 14 H 0.081 0.919 15 C -0.216 4.216 16 C -0.154 4.154 17 C -0.142 4.142 18 C -0.150 4.150 19 C 0.022 3.978 20 N -0.392 5.392 21 C -0.380 4.380 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.803 3.197 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.193 1.193 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.255 0.745 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.041 0.959 50 H 0.028 0.972 51 H 0.206 0.794 52 H 0.060 0.940 53 H 0.067 0.933 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.295 3.967 19.918 28.013 hybrid contribution 0.634 -0.303 -0.776 1.047 sum -18.660 3.665 19.142 26.982 Atomic orbital electron populations 1.21554 0.93649 1.02739 1.01697 1.21687 0.97926 0.90769 1.06634 1.21383 0.80244 0.93222 0.74757 1.90692 1.55868 1.48750 1.52414 1.48701 1.05759 1.08375 1.72785 1.22762 0.85167 0.91187 1.03469 1.22930 1.00510 0.91416 1.00805 1.22319 0.93740 0.95480 1.01699 0.83568 1.20657 0.82635 0.84481 0.81425 1.90722 1.64645 1.41214 1.50147 1.45952 1.06426 1.35032 1.48241 1.20932 0.93943 0.88641 0.92591 0.91944 1.22115 1.01436 0.96831 1.01209 1.21834 0.95526 0.97722 1.00290 1.21421 0.95849 0.97750 0.99178 1.21602 0.98413 0.96180 0.98850 1.20865 0.87578 0.94391 0.94982 1.42641 1.04233 1.33870 1.58448 1.19651 0.92789 1.04614 1.20909 0.90801 1.25607 0.95120 1.02994 1.03287 1.69816 0.97111 1.44178 1.50876 0.85122 0.76969 0.79141 0.78428 1.21562 1.21972 1.19272 1.21651 0.91879 0.85471 1.01698 0.93448 0.94043 0.89328 0.86765 0.85923 0.87668 0.88070 0.91455 0.85119 0.74548 0.94086 0.90786 0.90902 0.90017 0.89359 0.90835 0.93118 0.92860 0.91577 0.95917 0.97249 0.79449 0.93962 0.93304 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.13 -1.38 5.42 29.85 0.16 -1.22 16 3 C 0.51 10.40 7.85 87.66 0.69 11.08 16 4 O -0.60 -18.41 16.31 -3.03 -0.05 -18.46 16 5 N -0.62 -10.03 3.32 -811.36 -2.70 -12.73 16 6 C 0.10 0.61 6.70 86.93 0.58 1.19 16 7 C -0.12 -0.84 6.53 32.06 0.21 -0.63 16 8 C -0.11 -1.26 3.34 -10.35 -0.03 -1.30 16 9 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 10 C 0.52 9.47 7.10 87.66 0.62 10.10 16 11 O -0.59 -17.01 15.08 -3.05 -0.05 -17.05 16 12 N -0.70 -9.34 4.53 -442.53 -2.00 -11.34 16 13 C 0.14 2.35 2.57 44.99 0.12 2.46 16 14 H 0.06 1.39 7.58 -2.39 -0.02 1.37 16 15 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 16 C -0.12 -1.76 4.75 30.59 0.15 -1.62 16 17 C -0.10 -2.12 5.10 30.60 0.16 -1.97 16 18 C -0.11 -3.19 5.33 30.60 0.16 -3.03 16 19 C 0.15 5.71 6.26 86.38 0.54 6.25 16 20 N -0.75 -37.98 5.60 -343.44 -1.92 -39.91 16 21 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 24 N -0.97 -58.92 13.06 21.65 0.28 -58.63 16 25 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 C 0.12 2.25 6.29 86.73 0.55 2.80 16 30 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.11 0.76 7.85 -2.39 -0.02 0.75 16 34 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.10 0.35 7.48 -2.39 -0.02 0.33 16 37 H 0.07 0.78 8.04 -2.39 -0.02 0.76 16 38 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.42 2.91 8.60 -92.71 -0.80 2.11 16 40 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.32 7.75 -2.39 -0.02 1.30 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 50 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.37 20.00 7.67 -92.71 -0.71 19.29 16 52 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 53 H 0.05 1.36 6.80 -2.39 -0.02 1.34 16 54 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -83.79 434.59 1.50 -82.29 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.64 Total: 23.88 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 6.55 Total: 4.29 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.34 Total: -122.61 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.10 Total: -35.52 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -83.79 1.50 -82.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176057791.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.328 kcal (2) G-P(sol) polarization free energy of solvation -83.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds