Wall clock time and date at job start Sat Apr 11 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.55010 * 2 1 4 4 C 1.53075 * 117.53217 * 145.72037 * 2 1 3 5 5 C 1.52989 * 59.98620 * 107.46666 * 4 2 1 6 6 H 1.09006 * 117.49970 * 107.50313 * 5 4 2 7 7 C 1.53002 * 117.50086 * 252.49855 * 5 4 2 8 8 C 1.50706 * 109.47308 * 243.74823 * 7 5 4 9 9 O 1.21279 * 119.99692 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00142 * 179.97438 * 8 7 5 11 11 C 1.46496 * 119.99867 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47030 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46969 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46972 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47346 * 179.97438 * 14 13 12 16 16 C 1.52993 * 109.47473 * 179.97438 * 15 14 13 17 17 N 1.46906 * 109.47378 * 179.97438 * 16 15 14 18 18 C 1.46898 * 110.99888 * 180.02562 * 17 16 15 19 19 C 1.50704 * 109.47041 * 179.97438 * 18 17 16 20 20 O 1.21288 * 119.99745 * 0.02562 * 19 18 17 21 21 N 1.34775 * 119.99925 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99636 * 180.02562 * 21 19 18 23 23 H 1.07994 * 119.99897 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99566 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00106 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99599 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47397 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47119 * 120.00073 * 26 24 22 29 29 H 1.48502 * 109.46590 * 239.99910 * 26 24 22 30 30 H 1.08998 * 109.46936 * 205.66800 * 1 2 3 31 31 H 1.08997 * 109.47036 * 325.66729 * 1 2 3 32 32 H 1.09004 * 109.46782 * 85.66901 * 1 2 3 33 33 H 1.09004 * 117.51460 * 359.97438 * 4 2 1 34 34 H 1.09002 * 117.49149 * 214.95706 * 4 2 1 35 35 H 1.08996 * 109.47407 * 123.74443 * 7 5 4 36 36 H 1.09000 * 109.46986 * 3.74672 * 7 5 4 37 37 H 0.96999 * 120.00047 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47074 * 60.00441 * 11 10 8 39 39 H 1.09000 * 109.47217 * 300.00355 * 11 10 8 40 40 H 1.09004 * 109.46930 * 60.00232 * 12 11 10 41 41 H 1.09000 * 109.47312 * 300.00176 * 12 11 10 42 42 H 1.08996 * 109.47452 * 59.99938 * 13 12 11 43 43 H 1.09000 * 109.47054 * 300.00097 * 13 12 11 44 44 H 1.08996 * 109.47407 * 59.99513 * 14 13 12 45 45 H 1.09000 * 109.46986 * 299.99742 * 14 13 12 46 46 H 1.09004 * 109.47108 * 59.99711 * 15 14 13 47 47 H 1.09004 * 109.47368 * 299.99812 * 15 14 13 48 48 H 1.09004 * 109.46862 * 59.99962 * 16 15 14 49 49 H 1.09000 * 109.47250 * 299.99985 * 16 15 14 50 50 H 1.00901 * 111.00013 * 303.95621 * 17 16 15 51 51 H 1.08997 * 109.47334 * 299.99788 * 18 17 16 52 52 H 1.08995 * 109.47296 * 60.00089 * 18 17 16 53 53 H 0.96994 * 120.00393 * 0.02562 * 21 19 18 54 54 H 0.97002 * 119.99497 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1216 0.7645 5 6 2.2364 -1.1207 -0.7654 6 1 3.1712 -0.8746 -1.2693 7 6 1.3588 -2.1560 -1.4718 8 6 2.2301 -3.0977 -2.2624 9 8 3.4345 -2.9552 -2.2606 10 7 1.6711 -4.0989 -2.9706 11 6 2.5181 -5.0139 -3.7396 12 6 1.6404 -6.0492 -4.4459 13 6 2.5251 -7.0052 -5.2485 14 6 1.6474 -8.0401 -5.9554 15 6 2.5320 -8.9958 -6.7585 16 6 1.6544 -10.0311 -7.4648 17 7 2.5037 -10.9483 -8.2364 18 6 1.6933 -11.9582 -8.9302 19 6 2.5969 -12.8785 -9.7098 20 8 3.7978 -12.7100 -9.6890 21 7 2.0705 -13.8893 -10.4292 22 6 2.8927 -14.7268 -11.1380 23 1 3.9620 -14.5768 -11.1195 24 6 2.3500 -15.7687 -11.8801 25 7 1.0488 -15.9515 -11.9022 26 14 3.4702 -16.9103 -12.8453 27 1 4.8830 -16.4943 -12.6557 28 1 3.2943 -18.3028 -12.3603 29 1 3.1235 -16.8409 -14.2876 30 1 -0.3633 -0.9262 0.4451 31 1 -0.3633 0.8486 0.5796 32 1 -0.3633 0.0776 -1.0248 33 1 1.6131 -1.8596 1.2681 34 1 3.1729 -0.8756 1.2673 35 1 0.6683 -1.6481 -2.1451 36 1 0.7938 -2.7202 -0.7298 37 1 0.7078 -4.2131 -2.9718 38 1 3.2092 -5.5215 -3.0666 39 1 3.0825 -4.4494 -4.4819 40 1 0.9497 -5.5413 -5.1190 41 1 1.0758 -6.6137 -3.7040 42 1 3.2156 -7.5130 -4.5752 43 1 3.0901 -6.4410 -5.9905 44 1 0.9572 -7.5320 -6.6287 45 1 1.0821 -8.6044 -5.2137 46 1 3.2225 -9.5040 -6.0854 47 1 3.0970 -8.4313 -7.5003 48 1 0.9636 -9.5232 -8.1379 49 1 1.0898 -10.5956 -6.7228 50 1 3.0848 -10.4418 -8.8875 51 1 1.1289 -12.5364 -8.1987 52 1 1.0028 -11.4633 -9.6131 53 1 1.1102 -14.0243 -10.4456 54 1 0.6700 -16.6786 -12.4207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179474383.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:27 Heat of formation + Delta-G solvation = -111.672428 kcal Electronic energy + Delta-G solvation = -26867.249141 eV Core-core repulsion = 22837.163065 eV Total energy + Delta-G solvation = -4030.086076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88997 -40.17068 -38.73376 -37.93498 -36.81374 -35.94428 -35.06323 -33.29460 -32.54008 -30.89345 -29.30998 -28.74232 -27.26241 -25.67668 -23.80563 -22.61745 -22.22235 -22.04731 -21.47627 -21.02505 -20.15086 -19.90530 -18.25427 -17.82300 -17.28420 -17.01895 -16.93405 -16.55398 -16.35241 -16.08053 -15.97845 -15.46048 -15.15941 -15.12231 -14.76590 -14.64156 -14.39509 -13.91311 -13.83870 -13.72180 -13.59958 -13.47342 -13.39017 -13.11611 -12.90344 -12.86375 -12.51912 -12.43063 -12.41771 -12.35904 -12.12340 -12.11172 -11.89243 -11.72550 -11.64852 -11.52270 -11.31976 -10.97478 -10.81614 -10.62430 -10.35926 -10.09560 -10.02548 -9.31215 -8.47641 -5.96551 1.36451 1.41898 1.56274 1.65056 2.03776 2.19674 2.29166 2.86519 2.94300 3.19646 3.52516 3.71356 3.76388 3.83712 3.95351 4.00500 4.04880 4.15387 4.21307 4.25198 4.32429 4.45355 4.46894 4.52066 4.53418 4.54986 4.61484 4.64977 4.72713 4.76153 4.80689 4.87769 4.93394 4.98327 5.00239 5.02937 5.04347 5.09709 5.21810 5.24689 5.29902 5.33493 5.40462 5.46149 5.49298 5.50348 5.55215 5.90642 6.13047 6.41915 6.58011 6.59355 7.11767 7.28519 7.54961 8.10449 8.70093 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.058568 B = 0.000959 C = 0.000948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.959506 B =29184.115479 C =29523.501491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 H 0.102 0.898 4 C -0.180 4.180 5 C -0.154 4.154 6 H 0.087 0.913 7 C -0.099 4.099 8 C 0.506 3.494 9 O -0.592 6.592 10 N -0.720 5.720 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.117 4.117 14 C -0.107 4.107 15 C -0.114 4.114 16 C 0.060 3.940 17 N -0.689 5.689 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.269 1.269 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.418 0.582 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.039 0.961 49 H 0.076 0.924 50 H 0.342 0.658 51 H 0.104 0.896 52 H 0.067 0.933 53 H 0.397 0.603 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.492 30.317 22.911 39.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.120 0.880 4 C -0.217 4.217 5 C -0.172 4.172 6 H 0.105 0.895 7 C -0.138 4.138 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.373 5.373 11 C -0.007 4.007 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.145 4.145 15 C -0.152 4.152 16 C -0.068 4.068 17 N -0.322 5.322 18 C -0.068 4.068 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.195 1.195 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.255 0.745 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.161 0.839 51 H 0.122 0.878 52 H 0.084 0.916 53 H 0.231 0.769 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.850 29.962 23.360 39.009 hybrid contribution -0.214 -0.411 -1.366 1.443 sum -9.064 29.551 21.993 37.936 Atomic orbital electron populations 1.21404 0.91278 1.02757 1.02617 1.22505 0.96462 0.94009 1.03199 0.87987 1.23265 1.02715 1.02220 0.93527 1.22067 1.00798 1.00049 0.94334 0.89465 1.21207 0.97365 0.95251 1.00011 1.21276 0.88740 0.81529 0.79032 1.90692 1.17673 1.73770 1.65088 1.45969 1.11696 1.30387 1.49223 1.21333 0.93834 0.91059 0.94424 1.21697 0.98102 0.96043 0.99636 1.21473 0.98230 0.96721 0.99058 1.21454 0.97772 0.96228 0.99041 1.21528 0.98356 0.96131 0.99226 1.22093 0.94744 0.93235 0.96770 1.60108 1.23631 1.17574 1.30865 1.21538 0.93980 0.94113 0.97124 1.20936 0.89356 0.84062 0.83322 1.90486 1.17562 1.75073 1.68045 1.41939 1.09777 1.26535 1.42742 1.19707 0.91865 1.09161 1.25727 0.90447 1.26034 0.97747 0.98955 0.98375 1.69676 1.11374 1.32870 1.42195 0.84876 0.77873 0.77698 0.77919 1.19855 1.19519 1.19463 0.91622 0.91645 0.91269 0.87671 0.89522 0.86136 0.86478 0.74479 0.93045 0.92983 0.89915 0.89981 0.92190 0.92098 0.91031 0.91031 0.92320 0.92451 0.94288 0.90509 0.83940 0.87824 0.91561 0.76910 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 9.20 71.98 0.66 0.13 16 2 C -0.14 -1.22 6.41 -10.77 -0.07 -1.28 16 3 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.18 -1.87 9.83 30.62 0.30 -1.57 16 5 C -0.15 -1.88 5.41 -10.80 -0.06 -1.94 16 6 H 0.09 1.60 7.31 -2.38 -0.02 1.59 16 7 C -0.10 -0.78 5.06 29.85 0.15 -0.63 16 8 C 0.51 7.74 7.83 87.66 0.69 8.43 16 9 O -0.59 -15.39 15.56 -3.03 -0.05 -15.44 16 10 N -0.72 -7.21 5.56 -463.05 -2.57 -9.78 16 11 C 0.12 1.51 5.67 86.38 0.49 2.00 16 12 C -0.12 -0.97 5.33 30.59 0.16 -0.80 16 13 C -0.12 -1.40 5.21 30.59 0.16 -1.24 16 14 C -0.11 -1.37 5.21 30.59 0.16 -1.22 16 15 C -0.11 -2.19 5.47 30.59 0.17 -2.03 16 16 C 0.06 1.35 5.69 86.30 0.49 1.84 16 17 N -0.69 -22.28 6.13 -517.93 -3.17 -25.45 16 18 C 0.06 2.26 6.17 85.56 0.53 2.79 16 19 C 0.44 21.20 7.82 87.66 0.69 21.88 16 20 O -0.63 -35.58 15.78 -3.05 -0.05 -35.63 16 21 N -0.57 -29.81 5.29 -306.99 -1.62 -31.43 16 22 C -0.34 -19.29 9.68 84.04 0.81 -18.47 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 25 N -0.92 -49.76 13.05 21.66 0.28 -49.48 16 26 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 30 H 0.06 0.19 7.90 -2.39 -0.02 0.17 16 31 H 0.06 0.24 8.14 -2.39 -0.02 0.23 16 32 H 0.07 0.20 7.84 -2.38 -0.02 0.18 16 33 H 0.10 0.82 7.94 -2.38 -0.02 0.80 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.12 0.39 7.77 -2.39 -0.02 0.37 16 36 H 0.12 0.40 7.88 -2.39 -0.02 0.38 16 37 H 0.42 1.15 8.47 -92.71 -0.79 0.37 16 38 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 47 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.34 11.65 8.43 -89.69 -0.76 10.90 16 51 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 52 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 53 H 0.40 19.49 7.90 -92.71 -0.73 18.75 16 54 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -76.51 443.04 -0.74 -77.26 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -1.39 Total: 37.04 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 5.80 Total: 7.76 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -7.09 Total: -116.15 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.10 Total: -51.07 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -76.51 -0.74 -77.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179474383.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.415 kcal (2) G-P(sol) polarization free energy of solvation -76.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds