Wall clock time and date at job start Sat Apr 11 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50696 * 109.47039 * 2 1 4 4 O 1.21286 * 120.00261 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99851 * 179.97438 * 3 2 1 6 6 C 1.47025 * 125.64839 * 359.95710 * 5 3 2 7 7 C 1.54369 * 107.28664 * 181.12995 * 6 5 3 8 8 C 1.55160 * 102.92424 * 22.13697 * 7 6 5 9 9 H 1.09001 * 111.00150 * 82.63396 * 8 7 6 10 10 C 1.50695 * 111.00380 * 206.45509 * 8 7 6 11 11 O 1.21285 * 120.00087 * 115.42402 * 10 8 7 12 12 N 1.34776 * 120.00245 * 295.41277 * 10 8 7 13 13 C 1.46500 * 119.99946 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.46752 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.53006 * 109.47127 * 179.97438 * 17 16 15 19 19 N 1.46504 * 109.46883 * 180.02562 * 18 17 16 20 20 C 1.36936 * 119.99477 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00404 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99891 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00093 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47259 * 89.99741 * 24 22 20 26 26 H 1.48498 * 109.47318 * 209.99684 * 24 22 20 27 27 H 1.48498 * 109.47493 * 329.99764 * 24 22 20 28 28 C 1.47426 * 125.64459 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46880 * 300.00082 * 1 2 3 31 31 H 1.08999 * 109.46932 * 60.00039 * 1 2 3 32 32 H 1.08992 * 109.46842 * 239.99696 * 2 1 3 33 33 H 1.08999 * 109.46932 * 119.99961 * 2 1 3 34 34 H 1.08999 * 109.87922 * 300.50991 * 6 5 3 35 35 H 1.08997 * 109.87932 * 61.67825 * 6 5 3 36 36 H 1.09002 * 110.70353 * 263.79230 * 7 6 5 37 37 H 1.08997 * 110.75960 * 140.50927 * 7 6 5 38 38 H 0.96998 * 119.99803 * 0.02562 * 12 10 8 39 39 H 1.08996 * 109.46649 * 60.00699 * 13 12 10 40 40 H 1.08992 * 109.47239 * 300.00732 * 13 12 10 41 41 H 1.09001 * 109.46611 * 60.00445 * 14 13 12 42 42 H 1.08998 * 109.46884 * 300.00176 * 14 13 12 43 43 H 1.09000 * 109.47611 * 59.99728 * 15 14 13 44 44 H 1.09001 * 109.46832 * 300.00025 * 15 14 13 45 45 H 1.08996 * 109.47452 * 60.00000 * 16 15 14 46 46 H 1.09001 * 109.46997 * 299.99574 * 16 15 14 47 47 H 1.09001 * 109.47502 * 60.00153 * 17 16 15 48 48 H 1.09001 * 109.47289 * 299.99950 * 17 16 15 49 49 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 50 50 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 51 51 H 0.96992 * 119.99966 * 359.97438 * 19 18 17 52 52 H 0.96993 * 120.00031 * 180.02562 * 23 22 20 53 53 H 1.08993 * 110.37372 * 36.99497 * 28 5 3 54 54 H 1.08998 * 110.36245 * 274.67112 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4182 0.6490 0.0020 7 6 5.7696 1.3946 0.0312 8 6 5.3885 2.7811 0.6142 9 1 5.3384 2.7468 1.7026 10 6 6.3522 3.8441 0.1537 11 8 5.9638 4.7493 -0.5539 12 7 7.6456 3.7892 0.5284 13 6 8.5826 4.8224 0.0802 14 6 9.9748 4.5264 0.6415 15 6 10.9532 5.6057 0.1740 16 6 12.3456 5.3094 0.7347 17 6 13.3238 6.3891 0.2677 18 6 14.7161 6.0931 0.8290 19 7 15.6527 7.1274 0.3823 20 6 16.9670 7.0711 0.7625 21 1 17.3131 6.2645 1.3919 22 6 17.8546 8.0507 0.3388 23 7 17.4329 9.0334 -0.4287 24 14 19.6473 7.9743 0.8579 25 1 20.4193 7.1932 -0.1418 26 1 20.1974 9.3511 0.9422 27 1 19.7507 7.3179 2.1859 28 6 3.9832 3.0019 0.0011 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.3248 0.0177 0.8856 35 1 4.3494 0.0407 -0.8998 36 1 6.1746 1.4977 -0.9755 37 1 6.4786 0.8839 0.6827 38 1 7.9563 3.0651 1.0942 39 1 8.2466 5.7964 0.4358 40 1 8.6238 4.8277 -1.0089 41 1 10.3105 3.5523 0.2855 42 1 9.9338 4.5208 1.7307 43 1 10.6174 6.5796 0.5302 44 1 10.9943 5.6116 -0.9152 45 1 12.6813 4.3357 0.3781 46 1 12.3048 5.3032 1.8240 47 1 12.9880 7.3627 0.6247 48 1 13.3647 6.3959 -0.8215 49 1 14.6749 6.0868 1.9183 50 1 15.0521 5.1196 0.4724 51 1 15.3419 7.8515 -0.1832 52 1 18.0532 9.7177 -0.7250 53 1 3.4052 3.6917 0.6160 54 1 4.0692 3.3809 -1.0172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180000488.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:51 Heat of formation + Delta-G solvation = -120.254506 kcal Electronic energy + Delta-G solvation = -27738.754741 eV Core-core repulsion = 23708.296518 eV Total energy + Delta-G solvation = -4030.458223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.55730 -40.50658 -38.33746 -37.83674 -36.74031 -35.32568 -33.97402 -33.55649 -32.70456 -31.38018 -30.18407 -28.40719 -26.55566 -25.58718 -24.04557 -23.52627 -23.01096 -22.18397 -21.94322 -20.88387 -20.17659 -19.11978 -18.57033 -18.24701 -17.09363 -17.03707 -16.78635 -16.61144 -16.53181 -16.24231 -15.74594 -15.38729 -15.29229 -15.19796 -14.66840 -14.51135 -14.48307 -14.03806 -13.90181 -13.85812 -13.53839 -13.41216 -13.14344 -13.04098 -12.95737 -12.86317 -12.64226 -12.60473 -12.39710 -12.32043 -12.15228 -12.08172 -11.99985 -11.84502 -11.79554 -11.78663 -11.45655 -11.33028 -10.99407 -10.93245 -10.87703 -10.12759 -9.74051 -9.01542 -7.96406 -5.26059 1.46992 1.49417 1.53983 1.56586 1.58024 1.78244 2.28554 2.55943 3.20980 3.37348 3.43422 3.73223 3.74350 3.80160 4.01971 4.03605 4.13873 4.18584 4.21919 4.25196 4.26796 4.29732 4.32267 4.36403 4.56889 4.60542 4.65845 4.69742 4.77280 4.79884 4.84073 4.87130 4.93873 4.98523 4.99556 5.00517 5.03866 5.08340 5.11718 5.17631 5.22531 5.30487 5.35309 5.36179 5.44222 5.48469 5.54891 5.57896 6.26446 6.44065 6.53587 7.09353 7.21711 7.31774 8.09084 8.31611 9.27641 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.054214 B = 0.001089 C = 0.001074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.351835 B =25705.948539 C =26057.312490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.514 3.486 4 O -0.597 6.597 5 N -0.622 5.622 6 C 0.095 3.905 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.138 0.862 10 C 0.520 3.480 11 O -0.589 6.589 12 N -0.709 5.709 13 C 0.119 3.881 14 C -0.116 4.116 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.118 4.118 18 C 0.148 3.852 19 N -0.752 5.752 20 C -0.250 4.250 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.267 1.267 28 C 0.120 3.880 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.420 0.580 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.020 0.980 51 H 0.372 0.628 52 H 0.252 0.748 53 H 0.058 0.942 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.457 -27.594 4.537 42.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.305 3.695 4 O -0.478 6.478 5 N -0.356 5.356 6 C -0.026 4.026 7 C -0.151 4.151 8 C -0.134 4.134 9 H 0.156 0.844 10 C 0.307 3.693 11 O -0.469 6.469 12 N -0.361 5.361 13 C -0.005 4.005 14 C -0.153 4.153 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.156 4.156 18 C 0.022 3.978 19 N -0.395 5.395 20 C -0.382 4.382 21 H 0.094 0.906 22 C -0.269 4.269 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.192 1.192 28 C -0.004 4.004 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.150 0.850 38 H 0.258 0.742 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.037 0.963 50 H 0.038 0.962 51 H 0.204 0.796 52 H 0.061 0.939 53 H 0.077 0.923 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -32.067 -26.596 4.142 41.867 hybrid contribution 1.026 1.073 -0.140 1.492 sum -31.041 -25.523 4.003 40.385 Atomic orbital electron populations 1.21565 0.93822 1.02722 1.01645 1.21677 0.97744 0.90588 1.06785 1.21417 0.80171 0.93289 0.74630 1.90706 1.55853 1.48823 1.52416 1.48689 1.05770 1.08236 1.72930 1.22421 0.84806 0.90694 1.04725 1.22767 0.97607 0.91542 1.03170 1.22401 0.92081 0.95259 1.03709 0.84431 1.20671 0.83360 0.85962 0.79317 1.90747 1.78532 1.38019 1.39638 1.45842 1.07969 1.29532 1.52807 1.21340 0.89032 0.90972 0.99179 1.21681 0.91630 1.00056 1.01965 1.21462 0.93996 0.98973 1.00911 1.21412 0.93536 0.98023 1.01100 1.21657 0.94006 0.99695 1.00271 1.20881 0.89490 0.91082 0.96330 1.42685 1.06385 1.29413 1.60995 1.19700 0.86747 1.07207 1.24557 0.90552 1.25632 1.02760 0.97442 1.01073 1.69828 1.35660 1.15553 1.41285 0.85095 0.79699 0.76486 0.78227 1.21197 1.22068 1.19215 1.21831 0.92333 0.85566 1.00629 0.89324 0.93667 0.94000 0.86453 0.85885 0.87618 0.89101 0.90484 0.84967 0.74221 0.92930 0.92619 0.89539 0.89870 0.92243 0.92062 0.91027 0.91200 0.92912 0.92806 0.96278 0.96178 0.79632 0.93930 0.92346 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.20 71.99 0.66 -0.66 16 2 C -0.13 -0.81 5.61 29.85 0.17 -0.65 16 3 C 0.51 8.37 7.85 87.66 0.69 9.06 16 4 O -0.60 -16.40 16.24 -3.05 -0.05 -16.45 16 5 N -0.62 -7.53 3.33 -811.73 -2.70 -10.23 16 6 C 0.09 0.16 6.49 86.74 0.56 0.73 16 7 C -0.11 -0.14 6.41 31.80 0.20 0.06 16 8 C -0.11 -0.94 3.43 -10.15 -0.03 -0.97 16 9 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 10 C 0.52 7.98 7.15 87.66 0.63 8.60 16 11 O -0.59 -15.78 15.76 -3.05 -0.05 -15.83 16 12 N -0.71 -7.03 5.55 -463.06 -2.57 -9.60 16 13 C 0.12 1.67 5.67 86.38 0.49 2.16 16 14 C -0.12 -1.26 5.33 30.60 0.16 -1.10 16 15 C -0.12 -1.97 5.21 30.59 0.16 -1.81 16 16 C -0.10 -2.16 5.21 30.59 0.16 -2.00 16 17 C -0.12 -3.68 5.33 30.60 0.16 -3.52 16 18 C 0.15 5.95 6.26 86.38 0.54 6.50 16 19 N -0.75 -39.64 5.60 -343.43 -1.92 -41.57 16 20 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 22 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 23 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 24 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 C 0.12 1.99 6.00 86.85 0.52 2.51 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.04 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.04 0.56 8.10 -2.39 -0.02 0.54 16 32 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.11 -0.38 8.14 -2.39 -0.02 -0.39 16 35 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.08 0.28 8.03 -2.39 -0.02 0.26 16 37 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.42 0.93 8.47 -92.71 -0.79 0.15 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.37 20.85 7.67 -92.71 -0.71 20.14 16 52 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 53 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 54 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 Total: -1.00 -86.63 437.74 0.77 -85.87 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.63 Total: 18.47 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.38 Total: 1.37 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -6.91 Total: -121.82 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.10 Total: -32.28 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -86.63 0.77 -85.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180000488.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.386 kcal (2) G-P(sol) polarization free energy of solvation -86.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds