Wall clock time and date at job start Sat Apr 11 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47101 * 2 1 4 4 O 1.21280 * 119.99796 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99776 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99985 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47386 * 179.97438 * 6 5 3 8 8 C 1.53119 * 109.52504 * 184.99779 * 7 6 5 9 9 C 1.53041 * 109.27713 * 182.37360 * 8 7 6 10 10 N 1.46844 * 109.52122 * 59.18204 * 9 8 7 11 11 C 1.46904 * 110.99798 * 174.15817 * 10 9 8 12 12 C 1.50694 * 109.47138 * 293.60859 * 11 10 9 13 13 O 1.21284 * 120.00135 * 353.74644 * 12 11 10 14 14 N 1.34777 * 120.00138 * 173.74676 * 12 11 10 15 15 C 1.46494 * 119.99989 * 0.02562 * 14 12 11 16 16 C 1.53000 * 109.46862 * 269.99727 * 15 14 12 17 17 C 1.46504 * 120.00150 * 179.97438 * 14 12 11 18 18 C 1.50694 * 109.47388 * 270.00462 * 17 14 12 19 19 H 1.07996 * 119.99968 * 359.97438 * 18 17 14 20 20 C 1.37878 * 119.99887 * 179.97438 * 18 17 14 21 21 N 1.31516 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99972 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47353 * 60.00496 * 22 20 18 24 24 H 1.48499 * 109.47240 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47572 * 300.00265 * 22 20 18 26 26 C 1.46847 * 111.19981 * 298.25038 * 10 9 8 27 27 C 1.53045 * 109.51901 * 61.74733 * 26 10 9 28 28 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47052 * 300.00262 * 1 2 3 30 30 H 1.08993 * 109.47036 * 60.00000 * 1 2 3 31 31 H 1.09004 * 109.47052 * 239.99738 * 2 1 3 32 32 H 1.09004 * 109.47120 * 119.99502 * 2 1 3 33 33 H 0.96998 * 120.00087 * 359.97438 * 5 3 2 34 34 H 1.08993 * 109.47298 * 59.98971 * 6 5 3 35 35 H 1.09004 * 109.46544 * 299.99447 * 6 5 3 36 36 H 1.09010 * 109.52189 * 305.12695 * 7 6 5 37 37 H 1.08996 * 109.50213 * 62.43432 * 8 7 6 38 38 H 1.09003 * 109.50227 * 302.31806 * 8 7 6 39 39 H 1.08992 * 109.46562 * 299.16352 * 9 8 7 40 40 H 1.08998 * 109.45073 * 179.18770 * 9 8 7 41 41 H 1.09003 * 109.47282 * 173.60961 * 11 10 9 42 42 H 1.09004 * 109.47189 * 53.60764 * 11 10 9 43 43 H 1.09005 * 109.47378 * 29.99401 * 15 14 12 44 44 H 1.08996 * 109.47697 * 149.99927 * 15 14 12 45 45 H 1.09001 * 109.47527 * 299.99736 * 16 15 14 46 46 H 1.09005 * 109.47574 * 59.99779 * 16 15 14 47 47 H 1.08999 * 109.47660 * 180.02562 * 16 15 14 48 48 H 1.09007 * 109.46656 * 30.00647 * 17 14 12 49 49 H 1.09002 * 109.46752 * 150.00037 * 17 14 12 50 50 H 0.97003 * 120.00089 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.46732 * 181.76152 * 26 10 9 52 52 H 1.09002 * 109.46367 * 301.73510 * 26 10 9 53 53 H 1.08999 * 109.49783 * 180.88228 * 27 26 10 54 54 H 1.08996 * 109.50458 * 60.75957 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8458 3.0483 0.0000 7 6 5.3757 3.0483 -0.0001 8 6 5.8875 4.4859 0.1262 9 6 7.4167 4.4850 0.0660 10 7 7.8573 3.8997 -1.2067 11 6 9.3143 4.0083 -1.3596 12 6 9.6990 5.4596 -1.4887 13 8 8.8383 6.3101 -1.5706 14 7 10.9996 5.8124 -1.5132 15 6 12.0392 4.7850 -1.4149 16 6 12.3931 4.5567 0.0560 17 6 11.3736 7.2232 -1.6392 18 6 11.5100 7.5785 -3.0973 19 1 11.3359 6.8283 -3.8545 20 6 11.8570 8.8613 -3.4648 21 7 12.0695 9.7747 -2.5428 22 14 12.0268 9.3015 -5.2722 23 1 10.7327 9.0685 -5.9621 24 1 12.4058 10.7316 -5.3999 25 1 13.0775 8.4543 -5.8915 26 6 7.4179 2.5038 -1.3295 27 6 5.8887 2.4456 -1.3109 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 3.9877 0.9298 -0.0005 34 1 3.4828 3.5617 0.8904 35 1 3.4821 3.5626 -0.8896 36 1 5.7401 2.4568 0.8399 37 1 5.5611 4.9061 1.0775 38 1 5.4913 5.0865 -0.6926 39 1 7.8124 3.8957 0.8931 40 1 7.7835 5.5086 0.1412 41 1 9.6270 3.4686 -2.2536 42 1 9.8044 3.5788 -0.4858 43 1 11.6729 3.8546 -1.8490 44 1 12.9269 5.1134 -1.9554 45 1 12.7594 5.4870 0.4902 46 1 11.5054 4.2283 0.5967 47 1 13.1669 3.7926 0.1293 48 1 10.6028 7.8454 -1.1842 49 1 12.3239 7.3937 -1.1332 50 1 12.3140 10.6771 -2.8013 51 1 7.7858 2.0885 -2.2677 52 1 7.8136 1.9238 -0.4958 53 1 5.5632 1.4081 -1.3863 54 1 5.4926 3.0140 -2.1523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222189459.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:56 Heat of formation + Delta-G solvation = -110.376782 kcal Electronic energy + Delta-G solvation = -30081.942975 eV Core-core repulsion = 26051.913082 eV Total energy + Delta-G solvation = -4030.029893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14074 -40.70691 -39.51397 -36.97976 -36.43658 -34.92287 -34.14256 -33.44386 -31.79463 -31.57263 -30.14599 -28.69731 -26.86237 -25.10720 -24.57755 -24.05446 -23.84849 -22.56063 -21.36120 -20.55640 -19.83693 -18.60616 -18.12557 -17.89643 -17.30647 -16.97511 -16.76954 -16.55843 -16.40733 -15.94044 -15.62049 -15.44137 -15.09741 -14.95305 -14.65961 -14.45679 -14.36869 -14.14895 -13.98833 -13.84763 -13.48459 -13.31637 -13.23489 -13.12266 -13.06672 -12.89994 -12.66556 -12.62919 -12.61590 -12.49343 -12.14690 -12.12142 -12.00278 -11.88297 -11.72683 -11.68959 -11.46365 -11.27521 -10.85044 -10.63954 -10.43495 -10.07351 -9.39934 -9.13555 -8.21680 -6.36501 1.35392 1.40188 1.47194 1.68954 1.92143 2.26122 2.27248 2.42233 3.03199 3.07496 3.65705 3.73135 3.81261 3.83583 3.92075 4.13023 4.23484 4.25478 4.29678 4.31206 4.36323 4.38411 4.45382 4.51674 4.57347 4.61016 4.65395 4.70076 4.77472 4.88854 4.90266 4.96338 4.97392 4.99924 5.01968 5.06523 5.06888 5.08975 5.20482 5.22944 5.23808 5.33664 5.39135 5.43555 5.53260 5.59513 5.88430 6.04638 6.08509 6.27157 6.60887 6.72137 6.88261 7.30170 7.32154 7.59451 8.84755 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.001989 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.334701 B =14071.038025 C =14826.754982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.499 3.501 4 O -0.597 6.597 5 N -0.715 5.715 6 C 0.130 3.870 7 C -0.083 4.083 8 C -0.104 4.104 9 C 0.062 3.938 10 N -0.547 5.547 11 C 0.054 3.946 12 C 0.494 3.506 13 O -0.581 6.581 14 N -0.607 5.607 15 C 0.100 3.900 16 C -0.160 4.160 17 C 0.265 3.735 18 C -0.542 4.542 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.967 3.033 23 H -0.279 1.279 24 H -0.279 1.279 25 H -0.259 1.259 26 C 0.057 3.943 27 C -0.106 4.106 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.418 0.582 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.058 0.942 47 H 0.096 0.904 48 H -0.007 1.007 49 H 0.019 0.981 50 H 0.266 0.734 51 H 0.086 0.914 52 H 0.056 0.944 53 H 0.098 0.902 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -28.542 7.663 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.288 3.712 4 O -0.478 6.478 5 N -0.368 5.368 6 C 0.005 3.995 7 C -0.102 4.102 8 C -0.143 4.143 9 C -0.066 4.066 10 N -0.273 5.273 11 C -0.076 4.076 12 C 0.282 3.718 13 O -0.460 6.460 14 N -0.339 5.339 15 C -0.022 4.022 16 C -0.218 4.218 17 C 0.144 3.856 18 C -0.580 4.580 19 H 0.071 0.929 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.791 3.209 23 H -0.205 1.205 24 H -0.204 1.204 25 H -0.183 1.183 26 C -0.069 4.069 27 C -0.144 4.144 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.256 0.744 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.011 0.989 49 H 0.037 0.963 50 H 0.075 0.925 51 H 0.104 0.896 52 H 0.074 0.926 53 H 0.117 0.883 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.951 -27.003 7.276 30.413 hybrid contribution 0.839 0.911 -0.258 1.266 sum -11.112 -26.092 7.017 29.215 Atomic orbital electron populations 1.21548 0.94087 1.02537 1.01605 1.21693 0.97743 0.91270 1.06836 1.21615 0.82075 0.93043 0.74472 1.90703 1.56737 1.48635 1.51739 1.45948 1.07127 1.08970 1.74772 1.21215 0.93838 0.83407 1.00994 1.21329 0.92597 0.96573 0.99680 1.21469 0.94110 0.96825 1.01849 1.22002 0.96136 0.99249 0.89239 1.61432 1.10668 1.19695 1.35495 1.21954 0.89649 0.91703 1.04340 1.21310 0.81967 0.92283 0.76245 1.90633 1.50168 1.54141 1.51068 1.48307 1.06064 1.08568 1.70995 1.21723 0.91314 0.91111 0.98054 1.22146 1.02358 1.01931 0.95329 1.18622 0.93751 0.77804 0.95446 1.21701 1.46951 0.96237 0.93150 0.92895 1.25867 0.94792 0.96037 1.02569 1.70050 1.48022 1.03742 1.35036 0.85484 0.78646 0.77514 0.79261 1.20517 1.20388 1.18297 1.22204 0.96084 0.86342 1.02301 1.21647 0.94286 1.01836 0.96620 0.89589 0.93796 0.93932 0.86267 0.86146 0.74449 0.92625 0.93501 0.88428 0.90738 0.93291 0.93552 0.93438 0.86265 0.89739 0.88070 0.91157 0.94533 0.92304 0.88554 0.98937 0.96260 0.92493 0.89599 0.92603 0.88333 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.96 16 2 C -0.14 -1.09 6.42 29.85 0.19 -0.90 16 3 C 0.50 8.59 7.83 87.66 0.69 9.28 16 4 O -0.60 -16.99 15.98 -3.03 -0.05 -17.04 16 5 N -0.72 -8.97 5.31 -463.06 -2.46 -11.43 16 6 C 0.13 2.28 5.07 86.38 0.44 2.72 16 7 C -0.08 -1.26 2.29 -10.71 -0.02 -1.29 16 8 C -0.10 -2.40 5.38 30.65 0.16 -2.23 16 9 C 0.06 1.66 5.12 86.33 0.44 2.10 16 10 N -0.55 -14.54 4.35 -900.91 -3.92 -18.46 16 11 C 0.05 1.46 3.91 85.55 0.33 1.80 16 12 C 0.49 20.49 7.20 87.66 0.63 21.12 16 13 O -0.58 -30.70 14.29 -3.04 -0.04 -30.74 16 14 N -0.61 -25.62 2.46 -826.16 -2.03 -27.65 16 15 C 0.10 2.95 5.85 86.38 0.50 3.45 16 16 C -0.16 -3.76 10.18 71.98 0.73 -3.03 16 17 C 0.27 14.57 5.16 85.63 0.44 15.01 16 18 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 19 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 20 C 0.01 0.36 5.46 84.65 0.46 0.82 16 21 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 22 Si 0.97 45.80 29.54 68.60 2.03 47.82 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.06 0.94 5.46 86.33 0.47 1.41 16 27 C -0.11 -1.53 5.23 30.65 0.16 -1.37 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 31 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.42 2.08 7.69 -92.71 -0.71 1.37 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.05 1.74 6.06 -2.39 -0.01 1.73 16 41 H 0.12 2.69 7.55 -2.39 -0.02 2.68 16 42 H 0.08 1.78 6.83 -2.38 -0.02 1.76 16 43 H 0.10 2.19 6.61 -2.38 -0.02 2.18 16 44 H 0.07 2.23 8.07 -2.39 -0.02 2.22 16 45 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.06 1.27 7.12 -2.38 -0.02 1.25 16 47 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 48 H -0.01 -0.48 7.42 -2.38 -0.02 -0.50 16 49 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 50 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 51 H 0.09 1.25 8.01 -2.39 -0.02 1.23 16 52 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.10 0.76 7.28 -2.39 -0.02 0.74 16 54 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -86.68 424.54 0.50 -86.17 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.15 Total: 11.93 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 6.54 Total: 16.35 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -8.12 Total: -114.51 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.09 Total: -47.77 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -86.68 0.50 -86.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222189459.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.203 kcal (2) G-P(sol) polarization free energy of solvation -86.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds