Wall clock time and date at job start Sat Apr 11 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47258 * 2 1 4 4 C 1.53002 * 109.47121 * 240.00058 * 2 1 3 5 5 C 1.50694 * 109.47187 * 64.99800 * 4 2 1 6 6 N 1.34779 * 119.99900 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00254 * 359.97438 * 5 4 2 8 8 C 1.50701 * 109.47227 * 119.99539 * 2 1 3 9 9 O 1.21277 * 119.99627 * 105.11831 * 8 2 1 10 10 N 1.34780 * 120.00325 * 285.11784 * 8 2 1 11 11 C 1.46929 * 120.62678 * 5.85037 * 10 8 2 12 12 C 1.53192 * 108.77049 * 126.39152 * 11 10 8 13 13 C 1.53040 * 109.31112 * 54.63884 * 12 11 10 14 14 C 1.53041 * 109.53801 * 298.63015 * 13 12 11 15 15 H 1.09000 * 109.49957 * 181.31972 * 14 13 12 16 16 C 1.53002 * 109.49779 * 301.41507 * 14 13 12 17 17 C 1.46917 * 120.63092 * 185.85723 * 10 8 2 18 18 H 1.08994 * 109.70782 * 113.74921 * 17 10 8 19 19 C 1.52999 * 109.58984 * 353.39357 * 17 10 8 20 20 C 1.52999 * 109.47344 * 180.42289 * 19 17 10 21 21 C 1.53006 * 109.46999 * 175.45491 * 20 19 17 22 22 N 1.46500 * 109.47048 * 180.02562 * 21 20 19 23 23 C 1.36932 * 120.00283 * 180.02562 * 22 21 20 24 24 H 1.08001 * 119.99654 * 359.97438 * 23 22 21 25 25 C 1.38803 * 120.00303 * 180.02562 * 23 22 21 26 26 N 1.31619 * 119.99919 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00167 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47251 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.46957 * 59.99911 * 27 25 23 30 30 H 1.48494 * 109.46772 * 299.99917 * 27 25 23 31 31 H 1.08993 * 109.46974 * 184.54651 * 1 2 3 32 32 H 1.09007 * 109.47027 * 304.55072 * 1 2 3 33 33 H 1.08994 * 109.46882 * 64.54854 * 1 2 3 34 34 H 1.09004 * 109.46830 * 185.00211 * 4 2 1 35 35 H 1.09003 * 109.46629 * 304.99571 * 4 2 1 36 36 H 0.97006 * 119.99740 * 359.97438 * 6 5 4 37 37 H 0.97000 * 120.00333 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.58808 * 6.60909 * 11 10 8 39 39 H 1.08992 * 109.70604 * 246.25048 * 11 10 8 40 40 H 1.09000 * 109.50101 * 294.68217 * 12 11 10 41 41 H 1.09001 * 109.52145 * 174.60042 * 12 11 10 42 42 H 1.09000 * 109.46273 * 178.61208 * 13 12 11 43 43 H 1.09002 * 109.45324 * 58.64271 * 13 12 11 44 44 H 1.09003 * 109.47021 * 179.83311 * 16 14 13 45 45 H 1.08999 * 109.47174 * 299.83740 * 16 14 13 46 46 H 1.09002 * 109.47179 * 59.83876 * 16 14 13 47 47 H 1.08998 * 109.47112 * 60.42039 * 19 17 10 48 48 H 1.09000 * 109.46967 * 300.42377 * 19 17 10 49 49 H 1.09007 * 109.46766 * 55.46052 * 20 19 17 50 50 H 1.08992 * 109.47146 * 295.45402 * 20 19 17 51 51 H 1.08996 * 109.46624 * 60.00215 * 21 20 19 52 52 H 1.09000 * 109.47256 * 300.00272 * 21 20 19 53 53 H 0.97007 * 119.99589 * 0.02562 * 22 21 20 54 54 H 0.97002 * 120.00407 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 7 1.9845 -0.3920 -3.7002 7 8 1.0109 1.0868 -2.3633 8 6 2.0324 -0.7103 1.2305 9 8 2.4928 -1.8286 1.1396 10 7 1.9701 -0.1028 2.4320 11 6 1.3004 1.1966 2.5800 12 6 0.2535 1.0878 3.6930 13 6 0.9242 0.5772 4.9704 14 6 1.5094 -0.8145 4.7201 15 1 1.9664 -1.1873 5.6368 16 6 0.3945 -1.7659 4.2810 17 6 2.5705 -0.7273 3.6186 18 1 3.4095 -0.1246 3.9663 19 6 3.0605 -2.1332 3.2659 20 6 3.6757 -2.7849 4.5059 21 6 4.0625 -4.2298 4.1838 22 7 4.6511 -4.8540 5.3713 23 6 5.0762 -6.1547 5.3216 24 1 4.9773 -6.7205 4.4070 25 6 5.6333 -6.7464 6.4469 26 7 5.7534 -6.0570 7.5616 27 14 6.2139 -8.5206 6.3788 28 1 6.7660 -8.9118 7.7007 29 1 7.2687 -8.6567 5.3425 30 1 5.0692 -9.4032 6.0390 31 1 -0.3633 -1.0244 0.0815 32 1 -0.3633 0.5829 0.8465 33 1 -0.3633 0.4416 -0.9279 34 1 3.1264 -0.7995 -1.2055 35 1 1.6054 -1.7198 -1.2951 36 1 2.4884 -1.2159 -3.7907 37 1 1.7282 0.1091 -4.4902 38 1 0.8114 1.4644 1.6433 39 1 2.0332 1.9601 2.8409 40 1 -0.5289 0.3921 3.3899 41 1 -0.1838 2.0687 3.8789 42 1 0.1864 0.5223 5.7709 43 1 1.7229 1.2605 5.2591 44 1 0.8124 -2.7563 4.1000 45 1 -0.3602 -1.8277 5.0650 46 1 -0.0628 -1.3916 3.3651 47 1 3.8115 -2.0693 2.4786 48 1 2.2202 -2.7343 2.9186 49 1 2.9498 -2.7758 5.3191 50 1 4.5641 -2.2291 4.8056 51 1 4.7883 -4.2388 3.3707 52 1 3.1741 -4.7856 3.8841 53 1 4.7396 -4.3459 6.1929 54 1 5.4523 -5.1355 7.5970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264019713.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:05 Heat of formation + Delta-G solvation = -95.038461 kcal Electronic energy + Delta-G solvation = -31347.011735 eV Core-core repulsion = 27317.646962 eV Total energy + Delta-G solvation = -4029.364773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.08394 -40.57711 -38.91629 -37.55427 -36.07539 -34.77047 -34.63892 -34.21545 -33.02786 -30.91430 -29.10912 -28.20778 -27.23574 -26.00876 -24.78269 -24.56547 -23.14579 -21.99276 -21.64205 -20.53010 -19.39823 -19.24962 -18.47633 -17.97827 -17.42505 -16.93274 -16.86588 -16.44943 -16.40846 -16.18761 -15.79128 -15.54380 -15.38201 -15.17762 -14.97452 -14.89659 -14.51749 -14.26233 -13.83130 -13.71365 -13.59316 -13.34281 -13.21385 -12.93129 -12.81012 -12.64583 -12.60368 -12.48546 -12.27024 -12.17125 -12.06257 -11.97123 -11.88416 -11.80198 -11.62542 -11.42871 -11.21815 -11.13183 -10.96425 -10.94563 -10.60222 -9.96193 -9.47686 -9.16311 -8.45363 -5.38545 1.55843 1.62644 1.65092 1.66873 1.83850 1.92103 2.66150 2.69556 3.35266 3.41350 3.57958 3.76165 3.80307 3.85408 3.90186 3.97688 4.07707 4.12235 4.15600 4.18465 4.23325 4.38894 4.45125 4.51646 4.58559 4.63144 4.64209 4.65703 4.69212 4.77280 4.82107 4.82510 4.93007 4.97338 4.99788 5.02825 5.06035 5.10877 5.21305 5.22302 5.26827 5.33725 5.40992 5.45676 5.51609 5.53703 5.74837 5.92432 6.43335 6.45265 6.48350 7.05425 7.23216 7.34378 7.95560 8.07733 9.07004 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012399 B = 0.002590 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.765375 B =10806.713840 C =12651.016524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.107 0.893 4 C -0.124 4.124 5 C 0.521 3.479 6 N -0.840 5.840 7 O -0.578 6.578 8 C 0.512 3.488 9 O -0.562 6.562 10 N -0.601 5.601 11 C 0.094 3.906 12 C -0.133 4.133 13 C -0.111 4.111 14 C -0.105 4.105 15 H 0.073 0.927 16 C -0.140 4.140 17 C 0.156 3.844 18 H 0.075 0.925 19 C -0.083 4.083 20 C -0.119 4.119 21 C 0.164 3.836 22 N -0.758 5.758 23 C -0.341 4.341 24 H 0.062 0.938 25 C -0.104 4.104 26 N -0.972 5.972 27 Si 1.131 2.869 28 H -0.288 1.288 29 H -0.277 1.277 30 H -0.277 1.277 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.416 0.584 37 H 0.408 0.592 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.055 0.945 51 H 0.008 0.992 52 H 0.008 0.992 53 H 0.361 0.639 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.734 20.783 -19.139 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.125 0.875 4 C -0.164 4.164 5 C 0.307 3.693 6 N -0.404 5.404 7 O -0.458 6.458 8 C 0.301 3.699 9 O -0.441 6.441 10 N -0.333 5.333 11 C -0.027 4.027 12 C -0.171 4.171 13 C -0.149 4.149 14 C -0.124 4.124 15 H 0.091 0.909 16 C -0.198 4.198 17 C 0.053 3.947 18 H 0.093 0.907 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.038 3.962 22 N -0.403 5.403 23 C -0.473 4.473 24 H 0.080 0.920 25 C -0.295 4.295 26 N -0.620 5.620 27 Si 0.955 3.045 28 H -0.213 1.213 29 H -0.203 1.203 30 H -0.203 1.203 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.247 0.753 37 H 0.240 0.760 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.026 0.974 52 H 0.026 0.974 53 H 0.193 0.807 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.226 19.480 -18.305 29.824 hybrid contribution -0.293 0.921 -0.817 1.265 sum -13.519 20.400 -19.122 31.058 Atomic orbital electron populations 1.21949 0.91718 1.02227 1.04347 1.21004 0.98667 1.00678 0.90653 0.87521 1.21437 1.03908 1.00306 0.90752 1.20651 0.77891 0.84726 0.86052 1.43769 1.59158 1.29898 1.07575 1.90696 1.41641 1.26151 1.87326 1.20997 0.77886 0.85934 0.85080 1.90798 1.46960 1.20125 1.86254 1.48134 1.56085 1.21968 1.07116 1.22175 0.95753 0.83480 1.01322 1.21957 0.97748 1.02978 0.94378 1.21539 1.00555 0.94572 0.98214 1.21543 0.95901 0.97235 0.97691 0.90880 1.21812 0.98149 0.98455 1.01342 1.21225 0.94811 0.93442 0.85253 0.90696 1.21828 1.00801 0.94707 0.94748 1.21807 1.00301 0.94277 0.99332 1.20603 0.94189 0.92919 0.88498 1.42623 1.74976 1.11794 1.10904 1.20418 1.36996 0.90508 0.99346 0.92020 1.27362 1.00238 1.10107 0.91803 1.70987 1.52194 1.10610 1.28176 0.82609 0.76435 0.69777 0.75728 1.21338 1.20289 1.20293 0.93169 0.90473 0.90238 0.87846 0.87691 0.75308 0.76040 0.87656 0.89982 0.91521 0.88337 0.90949 0.91024 0.94602 0.92231 0.92263 0.91761 0.91623 0.91900 0.92630 0.97416 0.97396 0.80659 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.62 71.98 0.62 -1.60 16 2 C -0.09 -1.47 1.52 -11.54 -0.02 -1.49 16 3 H 0.11 1.63 7.22 -2.38 -0.02 1.62 16 4 C -0.12 -1.87 4.50 29.85 0.13 -1.74 16 5 C 0.52 7.82 7.78 87.65 0.68 8.50 16 6 N -0.84 -6.69 8.87 -173.54 -1.54 -8.23 16 7 O -0.58 -12.43 14.82 -3.02 -0.04 -12.47 16 8 C 0.51 11.35 6.85 87.66 0.60 11.95 16 9 O -0.56 -16.69 11.49 -3.02 -0.03 -16.73 16 10 N -0.60 -11.64 2.41 -795.04 -1.92 -13.56 16 11 C 0.09 1.16 5.75 86.36 0.50 1.66 16 12 C -0.13 -1.49 5.74 30.67 0.18 -1.32 16 13 C -0.11 -1.62 5.43 30.62 0.17 -1.45 16 14 C -0.10 -2.20 2.30 -10.71 -0.02 -2.23 16 15 H 0.07 1.74 6.66 -2.39 -0.02 1.72 16 16 C -0.14 -3.22 8.20 71.98 0.59 -2.63 16 17 C 0.16 3.64 2.72 44.98 0.12 3.76 16 18 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 19 C -0.08 -2.58 2.65 30.59 0.08 -2.50 16 20 C -0.12 -4.30 5.11 30.60 0.16 -4.15 16 21 C 0.16 7.66 6.26 86.38 0.54 8.20 16 22 N -0.76 -42.43 5.60 -343.46 -1.92 -44.35 16 23 C -0.34 -20.86 9.99 84.03 0.84 -20.02 16 24 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 25 C -0.10 -6.38 5.50 84.86 0.47 -5.91 16 26 N -0.97 -63.26 13.70 21.65 0.30 -62.96 16 27 Si 1.13 54.10 29.92 68.60 2.05 56.15 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 30 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.95 5.86 -2.38 -0.01 0.94 16 33 H 0.08 1.36 5.88 -2.39 -0.01 1.34 16 34 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 36 H 0.42 1.33 8.83 -92.70 -0.82 0.52 16 37 H 0.41 2.45 8.93 -92.71 -0.83 1.62 16 38 H 0.11 1.06 4.17 -2.38 -0.01 1.05 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.85 6.33 -2.39 -0.02 0.84 16 41 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.03 1.02 6.35 -2.39 -0.02 1.00 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.06 1.28 5.97 -2.39 -0.01 1.26 16 47 H 0.06 2.23 6.49 -2.39 -0.02 2.21 16 48 H 0.07 2.26 5.19 -2.39 -0.01 2.25 16 49 H 0.06 2.23 6.34 -2.38 -0.02 2.22 16 50 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 52 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 53 H 0.36 20.46 6.50 -92.70 -0.60 19.86 16 54 H 0.24 15.81 6.77 -92.71 -0.63 15.18 16 Total: -1.00 -80.54 400.02 1.35 -79.20 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -1.17 Total: 33.90 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 5.63 Total: -10.96 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -5.08 Total: -129.09 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.08 Total: -29.20 kcal Atomic # 14 Polarization: 54.10 SS G_CDS: 2.05 Total: 56.15 kcal Total: -80.54 1.35 -79.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264019713.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.843 kcal (2) G-P(sol) polarization free energy of solvation -80.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds