Wall clock time and date at job start Sat Apr 11 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.47330 * 2 1 4 4 O 1.21283 * 119.99666 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00447 * 180.27868 * 3 2 1 6 6 C 1.46498 * 119.99931 * 179.72128 * 5 3 2 7 7 H 1.08998 * 109.47343 * 35.00060 * 6 5 3 8 8 C 1.53002 * 109.47189 * 274.99814 * 6 5 3 9 9 C 1.50703 * 109.46694 * 154.99885 * 6 5 3 10 10 O 1.21277 * 120.00316 * 0.02562 * 9 6 5 11 11 N 1.34782 * 120.00002 * 179.97438 * 9 6 5 12 12 C 1.46497 * 120.00184 * 180.02562 * 11 9 6 13 13 H 1.09001 * 109.48922 * 325.04965 * 12 11 9 14 14 C 1.50881 * 109.49087 * 85.11764 * 12 11 9 15 15 C 1.53977 * 110.11002 * 211.84669 * 14 12 11 16 16 N 1.47604 * 112.11970 * 319.45706 * 15 14 12 17 17 C 1.36933 * 118.64419 * 137.86250 * 16 15 14 18 18 H 1.08007 * 120.00315 * 205.56483 * 17 16 15 19 19 C 1.38821 * 119.99982 * 25.56181 * 17 16 15 20 20 N 1.31617 * 119.99729 * 17.90492 * 19 17 16 21 21 Si 1.86798 * 120.00084 * 197.90573 * 19 17 16 22 22 H 1.48500 * 109.46968 * 89.99706 * 21 19 17 23 23 H 1.48493 * 109.47237 * 210.00034 * 21 19 17 24 24 H 1.48505 * 109.47084 * 330.00365 * 21 19 17 25 25 C 1.44584 * 122.71560 * 317.83662 * 16 15 14 26 26 C 1.54857 * 109.59807 * 90.74867 * 25 16 15 27 27 C 1.53009 * 109.32643 * 168.47416 * 26 25 16 28 28 C 1.52999 * 109.33223 * 49.00035 * 26 25 16 29 29 C 1.47093 * 110.32314 * 288.73212 * 26 25 16 30 30 H 1.08997 * 109.47619 * 59.99806 * 1 2 3 31 31 H 1.09001 * 109.47333 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46762 * 299.99951 * 1 2 3 33 33 H 1.09002 * 109.47467 * 239.99880 * 2 1 3 34 34 H 1.08997 * 109.47619 * 120.00194 * 2 1 3 35 35 H 0.97003 * 119.99688 * 359.72780 * 5 3 2 36 36 H 1.08997 * 109.46948 * 180.02562 * 8 6 5 37 37 H 1.08998 * 109.47179 * 300.00347 * 8 6 5 38 38 H 1.08996 * 109.47137 * 60.00616 * 8 6 5 39 39 H 0.97001 * 119.99692 * 0.02562 * 11 9 6 40 40 H 1.09011 * 109.36557 * 332.04299 * 14 12 11 41 41 H 1.09003 * 109.36583 * 91.65718 * 14 12 11 42 42 H 1.09001 * 108.96470 * 198.77212 * 15 14 12 43 43 H 1.08996 * 108.95220 * 80.12855 * 15 14 12 44 44 H 0.97000 * 119.99439 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.44523 * 330.70578 * 25 16 15 46 46 H 1.09004 * 109.44666 * 210.79068 * 25 16 15 47 47 H 1.08998 * 109.47093 * 180.86844 * 27 26 25 48 48 H 1.09001 * 109.46862 * 300.86704 * 27 26 25 49 49 H 1.09003 * 109.46929 * 60.86933 * 27 26 25 50 50 H 1.09008 * 109.46510 * 299.12914 * 28 26 25 51 51 H 1.08991 * 109.47414 * 59.12659 * 28 26 25 52 52 H 1.08999 * 109.47386 * 179.13363 * 28 26 25 53 53 H 1.08995 * 108.51464 * 301.55367 * 29 26 25 54 54 H 1.09002 * 108.51273 * 184.05931 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0057 6 6 3.8456 3.0484 -0.0118 7 1 3.1752 3.6734 0.5781 8 6 3.8918 3.5666 -1.4507 9 6 5.2293 3.0946 0.5834 10 8 5.7559 2.0743 0.9739 11 7 5.8820 4.2698 0.6809 12 6 7.2274 4.3147 1.2591 13 1 7.3045 3.5775 2.0583 14 6 8.2456 4.0064 0.1892 15 6 9.4583 3.2845 0.8048 16 7 9.8410 3.8556 2.1110 17 6 10.1791 3.0021 3.1270 18 1 10.0621 3.3127 4.1548 19 6 10.6722 1.7375 2.8359 20 7 11.1454 1.4758 1.6360 21 14 10.6640 0.4072 4.1473 22 1 9.3865 -0.3469 4.0794 23 1 11.7997 -0.5214 3.9176 24 1 10.7990 1.0324 5.4875 25 6 9.8740 5.2792 2.3619 26 6 8.4973 5.7444 2.8971 27 6 8.6175 7.1741 3.4288 28 6 8.0576 4.8204 4.0345 29 6 7.4926 5.7071 1.8234 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9877 0.9298 -0.0058 36 1 4.2554 4.5941 -1.4553 37 1 4.5621 2.9416 -2.0406 38 1 2.8910 3.5332 -1.8812 39 1 5.4610 5.0858 0.3683 40 1 7.7915 3.3680 -0.5688 41 1 8.5756 4.9361 -0.2744 42 1 10.3036 3.3662 0.1215 43 1 9.2132 2.2308 0.9375 44 1 11.4896 0.5920 1.4326 45 1 10.0999 5.8059 1.4347 46 1 10.6442 5.4996 3.1010 47 1 7.6534 7.4984 3.8202 48 1 9.3616 7.2043 4.2247 49 1 8.9232 7.8379 2.6201 50 1 7.9630 3.8014 3.6589 51 1 8.8005 4.8462 4.8315 52 1 7.0958 5.1550 4.4233 53 1 7.8299 6.3512 1.0114 54 1 6.5561 6.1073 2.2117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264195517.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:11 Heat of formation + Delta-G solvation = -85.024653 kcal Electronic energy + Delta-G solvation = -31926.996637 eV Core-core repulsion = 27898.066095 eV Total energy + Delta-G solvation = -4028.930542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66168 -40.75256 -39.77322 -36.42543 -36.11668 -35.92100 -33.88051 -33.31283 -32.45571 -31.07121 -28.79440 -28.19154 -27.19413 -26.28997 -25.54051 -24.70656 -23.38954 -21.50763 -21.28629 -21.15451 -19.60734 -18.75002 -18.58737 -17.88161 -17.25726 -16.84617 -16.72269 -16.43773 -16.11304 -15.97357 -15.54626 -15.26458 -15.22305 -14.82502 -14.58419 -14.51383 -14.42243 -13.86643 -13.64196 -13.45850 -13.36352 -13.12448 -13.09431 -12.99373 -12.74735 -12.73310 -12.66882 -12.63549 -12.59116 -12.42106 -12.22976 -12.03918 -11.98469 -11.77441 -11.44593 -11.37377 -11.25784 -11.04927 -10.99080 -10.84078 -10.38449 -10.23244 -10.05310 -8.59057 -7.81564 -5.22926 1.41568 1.46344 1.51018 1.51670 1.59156 1.85284 2.41531 2.53007 3.32143 3.53730 3.70817 3.78093 3.82084 4.00749 4.02181 4.08680 4.18466 4.22036 4.26340 4.36839 4.47006 4.60240 4.62073 4.70949 4.73551 4.78905 4.86196 4.90530 4.92109 4.98301 4.99506 5.00827 5.05625 5.11312 5.12597 5.13985 5.24168 5.26044 5.31711 5.37801 5.39284 5.48613 5.55071 5.60978 5.70195 5.73660 5.82771 5.85944 6.44416 6.45765 6.54251 7.15359 7.23511 7.24342 8.01580 8.39329 9.23644 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.003403 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.496897 B = 8227.119855 C = 9605.095269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.142 4.142 3 C 0.512 3.488 4 O -0.579 6.579 5 N -0.715 5.715 6 C 0.130 3.870 7 H 0.114 0.886 8 C -0.150 4.150 9 C 0.505 3.495 10 O -0.574 6.574 11 N -0.704 5.704 12 C 0.158 3.842 13 H 0.066 0.934 14 C -0.131 4.131 15 C 0.196 3.804 16 N -0.596 5.596 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.946 3.054 22 H -0.297 1.297 23 H -0.296 1.296 24 H -0.267 1.267 25 C 0.162 3.838 26 C -0.083 4.083 27 C -0.127 4.127 28 C -0.126 4.126 29 C -0.095 4.095 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.412 0.588 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.415 0.585 40 H 0.050 0.950 41 H 0.071 0.929 42 H -0.006 1.006 43 H 0.029 0.971 44 H 0.244 0.756 45 H 0.044 0.956 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.049 0.951 49 H 0.066 0.934 50 H 0.043 0.957 51 H 0.036 0.964 52 H 0.048 0.952 53 H 0.078 0.922 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.393 7.388 -5.453 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.181 4.181 3 C 0.301 3.699 4 O -0.459 6.459 5 N -0.368 5.368 6 C 0.021 3.979 7 H 0.132 0.868 8 C -0.208 4.208 9 C 0.290 3.710 10 O -0.453 6.453 11 N -0.356 5.356 12 C 0.053 3.947 13 H 0.084 0.916 14 C -0.171 4.171 15 C 0.070 3.930 16 N -0.317 5.317 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.776 3.224 22 H -0.225 1.225 23 H -0.223 1.223 24 H -0.191 1.191 25 C 0.035 3.965 26 C -0.086 4.086 27 C -0.184 4.184 28 C -0.183 4.183 29 C -0.133 4.133 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.250 0.750 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.252 0.748 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.012 0.988 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.085 0.915 50 H 0.062 0.938 51 H 0.055 0.945 52 H 0.067 0.933 53 H 0.096 0.904 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.472 7.215 -5.238 19.615 hybrid contribution 0.767 -1.348 0.510 1.632 sum -16.705 5.867 -4.729 18.325 Atomic orbital electron populations 1.21519 0.92828 1.02684 1.02132 1.21715 0.98598 0.91478 1.06353 1.21414 0.81191 0.93157 0.74152 1.90664 1.55931 1.47817 1.51491 1.45959 1.07776 1.08194 1.74901 1.20783 0.91649 0.85924 0.99536 0.86814 1.22079 1.03420 1.02707 0.92610 1.20998 0.87843 0.83828 0.78285 1.90772 1.69444 1.35086 1.50001 1.45986 1.17337 1.09649 1.62581 1.20313 0.79850 0.99365 0.95128 0.91615 1.22229 0.96528 1.00592 0.97707 1.20589 0.91656 0.95506 0.85276 1.43771 1.77077 1.01220 1.09674 1.19515 1.33921 0.95459 0.88478 0.91222 1.25599 0.99512 1.01453 0.98092 1.70218 1.44932 1.20745 1.22208 0.85566 0.76276 0.80284 0.80261 1.22497 1.22321 1.19140 1.20946 0.94324 0.83568 0.97647 1.20312 0.97000 0.96048 0.95217 1.21738 1.01940 0.93827 1.00925 1.21836 0.99060 0.99917 0.97509 1.20558 0.99779 0.94122 0.98803 0.92891 0.89792 0.93447 0.86526 0.87432 0.75046 0.88641 0.92065 0.91026 0.74792 0.93109 0.91008 0.98797 0.95193 0.94710 0.93798 0.94678 0.91709 0.93182 0.91545 0.93786 0.94525 0.93326 0.90391 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.20 71.98 0.66 -1.34 16 2 C -0.14 -2.13 6.42 29.85 0.19 -1.94 16 3 C 0.51 11.48 7.79 87.66 0.68 12.16 16 4 O -0.58 -16.54 15.64 -3.04 -0.05 -16.59 16 5 N -0.72 -16.17 4.95 -446.09 -2.21 -18.38 16 6 C 0.13 2.87 2.98 44.25 0.13 3.00 16 7 H 0.11 2.48 7.58 -2.39 -0.02 2.47 16 8 C -0.15 -2.56 9.38 71.98 0.68 -1.88 16 9 C 0.50 14.47 7.04 87.66 0.62 15.08 16 10 O -0.57 -22.58 15.50 -3.02 -0.05 -22.63 16 11 N -0.70 -17.39 4.82 -446.51 -2.15 -19.54 16 12 C 0.16 5.07 1.98 44.16 0.09 5.16 16 13 H 0.07 2.82 4.73 -2.39 -0.01 2.81 16 14 C -0.13 -4.73 5.38 30.24 0.16 -4.57 16 15 C 0.20 9.51 4.69 86.50 0.41 9.91 16 16 N -0.60 -28.54 1.86 -698.30 -1.30 -29.83 16 17 C -0.24 -13.13 7.64 84.04 0.64 -12.49 16 18 H 0.07 3.70 6.44 -2.91 -0.02 3.68 16 19 C -0.05 -2.96 4.81 84.86 0.41 -2.55 16 20 N -0.93 -56.65 11.10 21.65 0.24 -56.41 16 21 Si 0.95 46.97 29.59 68.60 2.03 49.00 16 22 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 23 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 25 C 0.16 6.18 4.70 87.37 0.41 6.59 16 26 C -0.08 -2.47 0.72 -53.38 -0.04 -2.51 16 27 C -0.13 -2.87 8.37 71.99 0.60 -2.27 16 28 C -0.13 -4.38 6.77 71.98 0.49 -3.89 16 29 C -0.09 -2.45 3.40 28.61 0.10 -2.35 16 30 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.41 9.38 7.79 -92.71 -0.72 8.66 16 36 H 0.09 1.16 7.56 -2.39 -0.02 1.14 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.41 6.74 8.02 -92.71 -0.74 5.99 16 40 H 0.05 1.86 7.85 -2.38 -0.02 1.85 16 41 H 0.07 2.24 7.32 -2.39 -0.02 2.22 16 42 H -0.01 -0.32 8.05 -2.39 -0.02 -0.34 16 43 H 0.03 1.72 6.33 -2.39 -0.02 1.71 16 44 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.04 1.56 8.07 -2.39 -0.02 1.54 16 46 H 0.03 1.41 7.95 -2.38 -0.02 1.39 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.04 1.88 4.48 -2.38 -0.01 1.87 16 51 H 0.04 1.31 7.50 -2.39 -0.02 1.29 16 52 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.08 1.72 7.36 -2.39 -0.02 1.70 16 54 H 0.08 1.64 8.01 -2.39 -0.02 1.63 16 Total: -1.00 -74.68 408.86 2.17 -72.51 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.57 Total: 25.74 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.23 Total: 16.13 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.42 Total: -124.16 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.09 Total: -39.21 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -74.68 2.17 -72.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264195517.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.519 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds