Wall clock time and date at job start Sat Apr 11 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47199 * 2 1 4 4 O 1.21274 * 120.00334 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99563 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99677 * 179.97438 * 5 3 2 7 7 H 1.09009 * 109.46892 * 324.99920 * 6 5 3 8 8 C 1.53001 * 109.46971 * 84.99736 * 6 5 3 9 9 C 1.50694 * 109.47092 * 204.99907 * 6 5 3 10 10 O 1.21286 * 119.99886 * 0.02562 * 9 6 5 11 11 N 1.34778 * 120.00289 * 179.97438 * 9 6 5 12 12 C 1.46494 * 120.00249 * 179.97438 * 11 9 6 13 13 H 1.09001 * 110.20951 * 33.07523 * 12 11 9 14 14 C 1.52653 * 110.22178 * 271.00002 * 12 11 9 15 15 C 1.46245 * 114.19851 * 151.65671 * 14 12 11 16 16 N 1.50169 * 107.58650 * 58.38095 * 15 14 12 17 17 C 1.36930 * 120.53886 * 109.53399 * 16 15 14 18 18 H 1.08002 * 119.99956 * 156.67511 * 17 16 15 19 19 C 1.38810 * 120.00150 * 336.67319 * 17 16 15 20 20 N 1.31613 * 120.00190 * 340.41577 * 19 17 16 21 21 Si 1.86802 * 119.99921 * 160.41202 * 19 17 16 22 22 H 1.48499 * 109.47098 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46863 * 120.00179 * 21 19 17 24 24 H 1.48496 * 109.47366 * 239.99961 * 21 19 17 25 25 C 1.43437 * 118.92140 * 289.55500 * 16 15 14 26 26 C 1.54898 * 116.07932 * 91.57069 * 25 16 15 27 27 C 1.52999 * 109.36421 * 78.84313 * 26 25 16 28 28 C 1.53006 * 109.35807 * 198.56889 * 26 25 16 29 29 C 1.50128 * 110.25008 * 155.00633 * 12 11 9 30 30 H 1.09001 * 109.47695 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47403 * 300.00285 * 1 2 3 32 32 H 1.09005 * 109.46767 * 59.99916 * 1 2 3 33 33 H 1.09005 * 109.47023 * 239.99482 * 2 1 3 34 34 H 1.09005 * 109.46767 * 120.00084 * 2 1 3 35 35 H 0.96989 * 120.00342 * 359.97438 * 5 3 2 36 36 H 1.08999 * 109.47126 * 60.00482 * 8 6 5 37 37 H 1.09006 * 109.46567 * 179.97438 * 8 6 5 38 38 H 1.08991 * 109.47482 * 299.99763 * 8 6 5 39 39 H 0.97001 * 119.99404 * 0.02562 * 11 9 6 40 40 H 1.09005 * 108.61883 * 30.40465 * 14 12 11 41 41 H 1.08992 * 108.51064 * 272.83929 * 14 12 11 42 42 H 1.08992 * 109.84839 * 298.83643 * 15 14 12 43 43 H 1.09006 * 109.84549 * 177.91701 * 15 14 12 44 44 H 0.97001 * 120.00335 * 179.97438 * 20 19 17 45 45 H 1.08998 * 108.15739 * 213.28099 * 25 16 15 46 46 H 1.08997 * 108.16046 * 330.05786 * 25 16 15 47 47 H 1.09000 * 109.47035 * 59.99753 * 27 26 25 48 48 H 1.08997 * 109.47363 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.46754 * 299.99692 * 27 26 25 50 50 H 1.08996 * 109.46986 * 59.99993 * 28 26 25 51 51 H 1.09005 * 109.46957 * 179.97438 * 28 26 25 52 52 H 1.08998 * 109.46940 * 299.99383 * 28 26 25 53 53 H 1.08995 * 109.21222 * 96.31074 * 29 12 11 54 54 H 1.09002 * 109.17286 * 336.97910 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6669 0.0005 6 6 3.8459 3.0482 0.0000 7 1 3.1736 3.6710 -0.5903 8 6 3.8966 3.5717 1.4367 9 6 5.2276 3.0921 -0.5998 10 8 5.7526 2.0703 -0.9889 11 7 5.8797 4.2670 -0.7047 12 6 7.2232 4.3096 -1.2873 13 1 7.3215 3.5502 -2.0630 14 6 8.2759 4.1002 -0.2018 15 6 9.5156 3.4885 -0.6790 16 7 10.0760 4.3769 -1.7522 17 6 11.2133 5.1059 -1.5284 18 1 11.8183 5.4321 -2.3615 19 6 11.5886 5.4257 -0.2308 20 7 10.7014 5.3830 0.7404 21 14 13.3531 5.9166 0.1370 22 1 14.1468 5.8872 -1.1177 23 1 13.3770 7.2883 0.7053 24 1 13.9379 4.9651 1.1156 25 6 9.4004 4.4497 -3.0154 26 6 8.3356 5.5661 -3.1548 27 6 9.0330 6.9020 -3.4191 28 6 7.4073 5.2381 -4.3259 29 6 7.5003 5.6714 -1.8552 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9877 0.9297 0.0013 36 1 4.5688 2.9489 2.0269 37 1 4.2604 4.5993 1.4362 38 1 2.8972 3.5400 1.8705 39 1 5.4597 5.0842 -0.3938 40 1 7.8526 3.4636 0.5753 41 1 8.5147 5.0675 0.2399 42 1 9.3069 2.5001 -1.0883 43 1 10.2276 3.4060 0.1423 44 1 10.9637 5.6061 1.6472 45 1 10.1496 4.5959 -3.7934 46 1 8.9104 3.4926 -3.1942 47 1 9.6119 6.8337 -4.3401 48 1 8.2853 7.6891 -3.5171 49 1 9.6985 7.1351 -2.5880 50 1 6.9131 4.2843 -4.1417 51 1 6.6569 6.0225 -4.4254 52 1 7.9902 5.1740 -5.2447 53 1 8.0507 6.2607 -1.1219 54 1 6.5546 6.1664 -2.0760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264195518.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:14 Heat of formation + Delta-G solvation = -81.553897 kcal Electronic energy + Delta-G solvation = -31763.562800 eV Core-core repulsion = 27734.782761 eV Total energy + Delta-G solvation = -4028.780039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.62228 -40.65998 -39.62560 -36.33520 -36.09018 -35.90735 -33.86262 -33.31837 -32.52759 -31.15787 -29.00838 -28.04500 -27.29893 -26.26728 -25.25751 -24.54723 -23.10773 -21.70063 -21.38600 -21.26846 -19.57137 -18.70014 -18.56799 -17.79666 -17.32678 -16.80850 -16.68878 -16.45032 -16.10980 -15.85180 -15.45564 -15.23174 -15.12658 -14.79093 -14.59280 -14.49229 -14.19014 -13.84992 -13.59286 -13.48950 -13.42012 -13.24336 -13.06955 -13.04394 -12.87557 -12.68957 -12.67866 -12.61296 -12.50600 -12.33583 -12.25369 -12.00963 -11.90846 -11.67356 -11.51475 -11.40235 -11.12487 -10.99560 -10.97464 -10.81504 -10.46733 -10.21475 -9.91820 -8.60697 -7.77962 -5.16778 1.47047 1.51002 1.52388 1.59252 1.60252 1.86283 2.43649 2.56987 3.35124 3.51963 3.61143 3.80814 3.97826 4.01960 4.06833 4.07448 4.10614 4.24442 4.29405 4.44305 4.48820 4.55504 4.60527 4.71701 4.76333 4.80031 4.80569 4.90836 4.93818 4.96761 5.01944 5.07884 5.08394 5.11816 5.14318 5.22224 5.26596 5.27252 5.32464 5.35841 5.40621 5.48228 5.54372 5.67038 5.69999 5.73428 5.80552 6.11395 6.46312 6.48169 6.52941 7.16963 7.19933 7.21926 7.94555 8.46601 9.26640 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002752 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.370660 B =10171.096050 C =10951.286073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.140 4.140 3 C 0.511 3.489 4 O -0.581 6.581 5 N -0.712 5.712 6 C 0.131 3.869 7 H 0.114 0.886 8 C -0.152 4.152 9 C 0.511 3.489 10 O -0.572 6.572 11 N -0.703 5.703 12 C 0.163 3.837 13 H 0.072 0.928 14 C -0.115 4.115 15 C 0.173 3.827 16 N -0.595 5.595 17 C -0.243 4.243 18 H 0.061 0.939 19 C -0.041 4.041 20 N -0.914 5.914 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.297 1.297 25 C 0.163 3.837 26 C -0.085 4.085 27 C -0.121 4.121 28 C -0.127 4.127 29 C -0.093 4.093 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.414 0.586 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.411 0.589 40 H 0.021 0.979 41 H 0.079 0.921 42 H 0.007 0.993 43 H 0.060 0.940 44 H 0.245 0.755 45 H 0.029 0.971 46 H 0.029 0.971 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.035 0.965 50 H 0.044 0.956 51 H 0.064 0.936 52 H 0.058 0.942 53 H 0.051 0.949 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.204 -5.516 -2.201 18.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.179 4.179 3 C 0.300 3.700 4 O -0.460 6.460 5 N -0.366 5.366 6 C 0.022 3.978 7 H 0.132 0.868 8 C -0.211 4.211 9 C 0.297 3.703 10 O -0.451 6.451 11 N -0.354 5.354 12 C 0.058 3.942 13 H 0.090 0.910 14 C -0.155 4.155 15 C 0.049 3.951 16 N -0.316 5.316 17 C -0.373 4.373 18 H 0.079 0.921 19 C -0.237 4.237 20 N -0.561 5.561 21 Si 0.780 3.220 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.224 1.224 25 C 0.034 3.966 26 C -0.089 4.089 27 C -0.179 4.179 28 C -0.185 4.185 29 C -0.131 4.131 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.248 0.752 40 H 0.040 0.960 41 H 0.097 0.903 42 H 0.025 0.975 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.063 0.937 51 H 0.083 0.917 52 H 0.078 0.922 53 H 0.069 0.931 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.309 -5.557 -2.331 18.328 hybrid contribution 1.502 0.493 0.752 1.750 sum -15.807 -5.064 -1.579 16.673 Atomic orbital electron populations 1.21531 0.93043 1.02687 1.02042 1.21707 0.98407 0.91277 1.06515 1.21474 0.81176 0.93231 0.74138 1.90673 1.56011 1.47926 1.51431 1.45903 1.07776 1.07915 1.74962 1.20720 0.91858 0.86162 0.99076 0.86804 1.22083 1.03365 1.02412 0.93219 1.20882 0.87698 0.83608 0.78147 1.90681 1.69497 1.34467 1.50476 1.46025 1.17257 1.09762 1.62315 1.20146 0.80433 0.98606 0.94982 0.91040 1.21111 0.94935 1.02774 0.96697 1.19930 0.94343 0.89313 0.91524 1.44290 1.27086 1.48229 1.12016 1.19294 0.98876 1.27233 0.91877 0.92122 1.25394 1.00180 1.01020 0.97057 1.70091 1.32152 1.53615 1.00208 0.85482 0.82490 0.76619 0.77423 1.20022 1.22393 1.22430 1.20616 0.93055 0.95130 0.87758 1.21840 0.95797 0.97183 0.94073 1.21645 0.99584 0.96107 1.00533 1.21761 0.98647 1.00989 0.97087 1.21646 0.99154 0.94976 0.97349 0.89703 0.93169 0.93436 0.86988 0.86521 0.74820 0.92068 0.89472 0.90912 0.75210 0.96006 0.90268 0.97498 0.92206 0.94547 0.95301 0.95291 0.93110 0.92515 0.94558 0.93686 0.91660 0.92250 0.93066 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 71.98 0.66 -1.18 16 2 C -0.14 -1.81 6.42 29.85 0.19 -1.62 16 3 C 0.51 10.71 7.79 87.65 0.68 11.40 16 4 O -0.58 -16.20 15.64 -3.01 -0.05 -16.25 16 5 N -0.71 -14.86 4.95 -446.09 -2.21 -17.07 16 6 C 0.13 2.89 2.98 44.24 0.13 3.02 16 7 H 0.11 2.50 7.58 -2.38 -0.02 2.48 16 8 C -0.15 -2.92 9.38 71.98 0.68 -2.24 16 9 C 0.51 14.25 7.22 87.65 0.63 14.88 16 10 O -0.57 -20.00 15.49 -3.05 -0.05 -20.05 16 11 N -0.70 -19.09 4.84 -447.52 -2.17 -21.26 16 12 C 0.16 5.59 2.16 43.95 0.09 5.69 16 13 H 0.07 2.75 5.15 -2.39 -0.01 2.74 16 14 C -0.12 -4.84 4.75 28.40 0.13 -4.71 16 15 C 0.17 8.18 5.24 83.58 0.44 8.62 16 16 N -0.60 -28.14 2.60 -707.84 -1.84 -29.98 16 17 C -0.24 -12.56 8.94 84.03 0.75 -11.81 16 18 H 0.06 3.17 7.89 -2.91 -0.02 3.15 16 19 C -0.04 -2.14 4.91 84.86 0.42 -1.72 16 20 N -0.91 -49.39 9.43 21.65 0.20 -49.18 16 21 Si 0.95 43.74 29.60 68.60 2.03 45.77 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 C 0.16 6.51 4.01 87.59 0.35 6.86 16 26 C -0.09 -2.83 0.77 -50.90 -0.04 -2.87 16 27 C -0.12 -4.04 8.29 71.98 0.60 -3.44 16 28 C -0.13 -3.40 8.20 71.98 0.59 -2.81 16 29 C -0.09 -3.09 4.15 30.30 0.13 -2.96 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.05 0.78 8.10 -2.38 -0.02 0.76 16 33 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.41 8.19 7.79 -92.72 -0.72 7.47 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.42 7.56 -2.38 -0.02 1.40 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.41 8.77 7.95 -92.71 -0.74 8.03 16 40 H 0.02 0.91 8.02 -2.38 -0.02 0.89 16 41 H 0.08 3.77 5.29 -2.39 -0.01 3.75 16 42 H 0.01 0.32 8.12 -2.39 -0.02 0.30 16 43 H 0.06 3.19 6.06 -2.38 -0.01 3.18 16 44 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 45 H 0.03 1.17 7.83 -2.39 -0.02 1.15 16 46 H 0.03 1.14 6.66 -2.39 -0.02 1.13 16 47 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 48 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.04 1.47 7.45 -2.39 -0.02 1.45 16 50 H 0.04 1.23 7.55 -2.39 -0.02 1.22 16 51 H 0.06 1.51 8.12 -2.38 -0.02 1.49 16 52 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 53 H 0.05 2.06 6.66 -2.39 -0.02 2.04 16 54 H 0.07 1.95 7.67 -2.39 -0.02 1.93 16 Total: -1.00 -64.92 411.27 1.80 -63.12 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.56 Total: 29.81 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 6.44 Total: 15.10 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -6.01 Total: -117.50 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.09 Total: -36.30 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -64.92 1.80 -63.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264195518.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.435 kcal (2) G-P(sol) polarization free energy of solvation -64.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds