Wall clock time and date at job start Sat Apr 11 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47089 * 2 1 4 4 O 1.21281 * 120.00159 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99795 * 179.72436 * 3 2 1 6 6 C 1.46499 * 119.99836 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.47048 * 324.99717 * 6 5 3 8 8 C 1.53001 * 109.47251 * 85.00062 * 6 5 3 9 9 C 1.50703 * 109.46975 * 204.99471 * 6 5 3 10 10 O 1.21275 * 120.00083 * 0.02562 * 9 6 5 11 11 N 1.34781 * 119.99851 * 179.97438 * 9 6 5 12 12 C 1.46494 * 119.99809 * 180.02562 * 11 9 6 13 13 H 1.09001 * 108.45402 * 327.31454 * 12 11 9 14 14 C 1.47095 * 108.51386 * 85.00430 * 12 11 9 15 15 C 1.54859 * 110.32512 * 184.05411 * 14 12 11 16 16 N 1.44579 * 109.60102 * 288.73214 * 15 14 12 17 17 C 1.36939 * 118.64540 * 270.70632 * 16 15 14 18 18 H 1.08002 * 119.99844 * 30.46795 * 17 16 15 19 19 C 1.38804 * 119.99969 * 210.47371 * 17 16 15 20 20 N 1.31621 * 120.00110 * 10.91288 * 19 17 16 21 21 Si 1.86803 * 120.00093 * 190.91371 * 19 17 16 22 22 H 1.48499 * 109.47415 * 89.99705 * 21 19 17 23 23 H 1.48498 * 109.47186 * 210.00272 * 21 19 17 24 24 H 1.48504 * 109.46816 * 330.00038 * 21 19 17 25 25 C 1.47603 * 122.71278 * 90.72346 * 16 15 14 26 26 C 1.53942 * 112.14229 * 317.87229 * 25 16 15 27 27 C 1.53003 * 109.36638 * 79.62600 * 26 25 16 28 28 C 1.53000 * 109.36858 * 199.23991 * 26 25 16 29 29 C 1.50879 * 110.09685 * 319.43231 * 26 25 16 30 30 H 1.09004 * 109.46869 * 60.00680 * 1 2 3 31 31 H 1.09002 * 109.47436 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47532 * 300.00375 * 1 2 3 33 33 H 1.08995 * 109.47532 * 239.99625 * 2 1 3 34 34 H 1.09007 * 109.46630 * 119.99778 * 2 1 3 35 35 H 0.96997 * 120.00130 * 359.97438 * 5 3 2 36 36 H 1.09001 * 109.47624 * 180.02562 * 8 6 5 37 37 H 1.09006 * 109.46895 * 299.99587 * 8 6 5 38 38 H 1.09002 * 109.47124 * 59.99407 * 8 6 5 39 39 H 0.96999 * 119.99564 * 0.02562 * 11 9 6 40 40 H 1.08998 * 109.32584 * 304.32196 * 14 12 11 41 41 H 1.09003 * 109.32476 * 63.79291 * 14 12 11 42 42 H 1.08999 * 109.44773 * 48.77341 * 15 14 12 43 43 H 1.09007 * 109.44814 * 168.69662 * 15 14 12 44 44 H 0.97001 * 119.99789 * 180.02562 * 20 19 17 45 45 H 1.09000 * 108.94312 * 78.55742 * 25 16 15 46 46 H 1.08997 * 108.94889 * 197.18471 * 25 16 15 47 47 H 1.09000 * 109.47469 * 60.13512 * 27 26 25 48 48 H 1.09004 * 109.46893 * 180.13261 * 27 26 25 49 49 H 1.09001 * 109.47284 * 300.12671 * 27 26 25 50 50 H 1.09000 * 109.46696 * 59.99723 * 28 26 25 51 51 H 1.09001 * 109.47793 * 179.97438 * 28 26 25 52 52 H 1.09003 * 109.46914 * 300.00286 * 28 26 25 53 53 H 1.08995 * 109.48619 * 331.91891 * 29 26 25 54 54 H 1.09004 * 109.49014 * 211.85028 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0056 6 6 3.8457 3.0483 0.0050 7 1 3.1759 3.6702 -0.5888 8 6 3.8906 3.5740 1.4412 9 6 5.2300 3.0914 -0.5890 10 8 5.7566 2.0691 -0.9744 11 7 5.8825 4.2661 -0.6929 12 6 7.2279 4.3081 -1.2709 13 1 7.7401 3.3791 -1.0206 14 6 7.1052 4.3941 -2.7342 15 6 8.5043 4.3384 -3.3956 16 7 9.2114 5.5732 -3.1394 17 6 9.0636 6.6096 -4.0222 18 1 8.1386 6.7270 -4.5671 19 6 10.1027 7.5091 -4.2167 20 7 11.2963 7.2522 -3.7249 21 14 9.8072 9.0843 -5.1764 22 1 9.3816 10.1593 -4.2445 23 1 11.0614 9.4898 -5.8604 24 1 8.7437 8.8558 -6.1873 25 6 10.0862 5.7628 -1.9657 26 6 9.4719 5.1738 -0.6830 27 6 9.6914 3.6597 -0.6643 28 6 10.1515 5.7973 0.5378 29 6 7.9923 5.4655 -0.6354 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9877 0.9298 0.0100 36 1 4.2535 4.6018 1.4408 37 1 2.8893 3.5428 1.8709 38 1 4.5603 2.9519 2.0351 39 1 5.4611 5.0838 -0.3850 40 1 6.5020 3.5610 -3.0952 41 1 6.6171 5.3315 -3.0008 42 1 9.0692 3.5038 -2.9802 43 1 8.3922 4.2008 -4.4711 44 1 12.0223 7.8810 -3.8605 45 1 11.0431 5.2767 -2.1555 46 1 10.2558 6.8295 -1.8194 47 1 10.7603 3.4471 -0.6848 48 1 9.2549 3.2405 0.2423 49 1 9.2152 3.2127 -1.5370 50 1 10.0021 6.8769 0.5248 51 1 9.7175 5.3817 1.4472 52 1 11.2189 5.5779 0.5109 53 1 7.7849 6.3837 -1.1848 54 1 7.6780 5.5830 0.4017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264195519.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:17 Heat of formation + Delta-G solvation = -73.833629 kcal Electronic energy + Delta-G solvation = -31561.611612 eV Core-core repulsion = 27533.166349 eV Total energy + Delta-G solvation = -4028.445263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77127 -40.83079 -39.75929 -36.50823 -36.04115 -35.78240 -33.96847 -33.68225 -32.24794 -30.89527 -28.88322 -28.20608 -27.34798 -26.26633 -25.77287 -24.72129 -23.28781 -21.53147 -21.28179 -21.22176 -19.57057 -18.72337 -18.52334 -17.79564 -17.49296 -16.89732 -16.76650 -16.52021 -16.13182 -15.94644 -15.39177 -15.31019 -15.12304 -14.77085 -14.53718 -14.39361 -14.20217 -14.08089 -13.85166 -13.58297 -13.40989 -13.31794 -13.06727 -12.99177 -12.94512 -12.84643 -12.65867 -12.63565 -12.61928 -12.27029 -12.14259 -12.01526 -12.00854 -11.78899 -11.62428 -11.51066 -11.09234 -10.98472 -10.82960 -10.76511 -10.45469 -10.21902 -10.02083 -8.56372 -7.82323 -5.33767 1.45643 1.47164 1.51263 1.55220 1.62126 1.85563 2.43851 2.51679 3.30714 3.54474 3.68850 3.77004 3.82660 4.02253 4.06444 4.09605 4.15650 4.23680 4.24273 4.29367 4.43134 4.46004 4.62386 4.73189 4.74787 4.75116 4.81544 4.83798 4.85865 4.87313 5.00254 5.01472 5.05701 5.07885 5.14042 5.15828 5.20644 5.25658 5.28713 5.31229 5.40597 5.43639 5.51272 5.56359 5.60049 5.68865 5.76057 5.90541 6.45342 6.48990 6.52618 7.16497 7.20932 7.23066 7.98123 8.37852 9.21183 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.002586 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.982466 B =10823.785053 C =11496.029804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.510 3.490 4 O -0.583 6.583 5 N -0.711 5.711 6 C 0.127 3.873 7 H 0.106 0.894 8 C -0.151 4.151 9 C 0.512 3.488 10 O -0.570 6.570 11 N -0.710 5.710 12 C 0.149 3.851 13 H 0.094 0.906 14 C -0.137 4.137 15 C 0.151 3.849 16 N -0.599 5.599 17 C -0.262 4.262 18 H 0.059 0.941 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.960 3.040 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.273 1.273 25 C 0.206 3.794 26 C -0.084 4.084 27 C -0.147 4.147 28 C -0.126 4.126 29 C -0.092 4.092 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.416 0.584 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.410 0.590 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.032 0.968 44 H 0.248 0.752 45 H -0.009 1.009 46 H 0.039 0.961 47 H 0.046 0.954 48 H 0.066 0.934 49 H 0.062 0.938 50 H 0.046 0.954 51 H 0.075 0.925 52 H 0.048 0.952 53 H 0.053 0.947 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 -12.035 13.815 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C 0.298 3.702 4 O -0.463 6.463 5 N -0.364 5.364 6 C 0.018 3.982 7 H 0.123 0.877 8 C -0.209 4.209 9 C 0.298 3.702 10 O -0.449 6.449 11 N -0.360 5.360 12 C 0.046 3.954 13 H 0.112 0.888 14 C -0.178 4.178 15 C 0.023 3.977 16 N -0.320 5.320 17 C -0.393 4.393 18 H 0.076 0.924 19 C -0.239 4.239 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.198 1.198 25 C 0.082 3.918 26 C -0.085 4.085 27 C -0.204 4.204 28 C -0.184 4.184 29 C -0.130 4.130 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.253 0.747 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.009 0.991 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.085 0.915 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.093 0.907 52 H 0.067 0.933 53 H 0.072 0.928 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.988 -12.029 13.524 23.500 hybrid contribution 0.492 1.295 -1.008 1.713 sum -14.496 -10.734 12.516 21.955 Atomic orbital electron populations 1.21535 0.93239 1.02670 1.01965 1.21701 0.98270 0.91288 1.06576 1.21491 0.81315 0.93201 0.74156 1.90684 1.56124 1.48004 1.51447 1.45870 1.07670 1.07964 1.74944 1.20751 0.91963 0.86033 0.99468 0.87673 1.22078 1.03437 1.02565 0.92832 1.20802 0.87641 0.83667 0.78073 1.90674 1.69050 1.34504 1.50699 1.46235 1.17853 1.09652 1.62286 1.20121 0.81815 1.01193 0.92266 0.88817 1.21628 0.99413 1.00412 0.96325 1.20891 0.91259 0.88559 0.96970 1.43771 1.54018 1.10439 1.23822 1.19405 0.96688 1.04810 1.18366 0.92360 1.25797 0.94693 1.02838 1.00538 1.70188 1.00801 1.36508 1.50276 0.85380 0.76592 0.80501 0.78613 1.21097 1.22326 1.19826 1.20815 0.89670 0.97842 0.83523 1.20806 0.95400 0.96011 0.96328 1.22284 1.01069 0.95111 1.01889 1.21758 1.00121 1.00100 0.96411 1.21183 0.93936 0.97422 1.00444 0.93684 0.89692 0.93117 0.87075 0.86237 0.74661 0.89233 0.91394 0.91234 0.75363 0.92976 0.93361 0.92961 0.94995 0.94272 0.99077 0.94263 0.93526 0.91541 0.91963 0.93451 0.90652 0.93297 0.92811 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.20 71.98 0.66 -1.09 16 2 C -0.14 -1.61 6.42 29.85 0.19 -1.42 16 3 C 0.51 9.96 7.79 87.66 0.68 10.65 16 4 O -0.58 -15.84 15.65 -3.03 -0.05 -15.89 16 5 N -0.71 -13.08 4.95 -446.09 -2.21 -15.29 16 6 C 0.13 2.46 2.98 44.25 0.13 2.59 16 7 H 0.11 2.24 7.58 -2.39 -0.02 2.22 16 8 C -0.15 -2.24 9.38 71.98 0.68 -1.57 16 9 C 0.51 12.26 7.07 87.66 0.62 12.88 16 10 O -0.57 -17.20 15.34 -3.01 -0.05 -17.25 16 11 N -0.71 -16.36 4.78 -452.05 -2.16 -18.52 16 12 C 0.15 4.40 1.79 43.01 0.08 4.48 16 13 H 0.09 2.94 3.95 -2.39 -0.01 2.93 16 14 C -0.14 -4.79 5.20 29.39 0.15 -4.64 16 15 C 0.15 6.27 5.58 87.37 0.49 6.75 16 16 N -0.60 -28.82 2.26 -698.39 -1.58 -30.40 16 17 C -0.26 -14.06 9.41 84.03 0.79 -13.27 16 18 H 0.06 3.12 7.85 -2.91 -0.02 3.10 16 19 C -0.04 -2.36 4.97 84.86 0.42 -1.93 16 20 N -0.93 -54.09 11.00 21.65 0.24 -53.86 16 21 Si 0.96 44.59 29.57 68.60 2.03 46.62 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 C 0.21 9.48 3.53 86.49 0.31 9.78 16 26 C -0.08 -2.80 0.75 -52.55 -0.04 -2.84 16 27 C -0.15 -4.53 6.76 71.98 0.49 -4.05 16 28 C -0.13 -3.64 8.15 71.98 0.59 -3.05 16 29 C -0.09 -2.76 4.39 29.76 0.13 -2.63 16 30 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.42 6.85 7.79 -92.71 -0.72 6.13 16 36 H 0.09 1.03 7.57 -2.39 -0.02 1.01 16 37 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.41 7.37 8.03 -92.71 -0.74 6.62 16 40 H 0.05 1.82 7.95 -2.39 -0.02 1.80 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 2.09 5.22 -2.39 -0.01 2.08 16 43 H 0.03 1.39 7.99 -2.38 -0.02 1.38 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 45 H -0.01 -0.46 7.83 -2.39 -0.02 -0.48 16 46 H 0.04 2.05 6.31 -2.39 -0.02 2.03 16 47 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 48 H 0.07 1.73 7.90 -2.38 -0.02 1.71 16 49 H 0.06 2.08 3.16 -2.39 -0.01 2.08 16 50 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 51 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 52 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 53 H 0.05 1.92 7.48 -2.39 -0.02 1.91 16 54 H 0.08 2.03 7.63 -2.38 -0.02 2.01 16 Total: -1.00 -69.55 408.29 2.02 -67.53 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.56 Total: 26.40 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.36 Total: 10.65 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.71 Total: -118.06 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.09 Total: -33.14 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.55 2.02 -67.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264195519.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.306 kcal (2) G-P(sol) polarization free energy of solvation -69.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds