Wall clock time and date at job start Sat Apr 11 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47086 * 2 1 4 4 C 1.53000 * 109.46843 * 119.99872 * 2 1 3 5 5 C 1.53003 * 109.47308 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46901 * 300.00098 * 5 4 2 7 7 C 1.53000 * 109.47220 * 59.99847 * 6 5 4 8 8 H 1.09004 * 109.47131 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47245 * 59.99793 * 7 6 5 10 10 O 1.21283 * 120.00262 * 240.00295 * 9 7 6 11 11 N 1.34777 * 119.99928 * 59.72201 * 9 7 6 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 13 13 C 1.52997 * 109.47555 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47273 * 179.97438 * 13 12 11 15 15 N 1.46903 * 109.47143 * 179.97438 * 14 13 12 16 16 C 1.46906 * 110.99856 * 66.04773 * 15 14 13 17 17 C 1.46897 * 111.00151 * 190.00254 * 15 14 13 18 18 C 1.50699 * 109.47078 * 170.00416 * 17 15 14 19 19 O 1.21291 * 119.99928 * 0.02562 * 18 17 15 20 20 N 1.34777 * 119.99991 * 180.02562 * 18 17 15 21 21 C 1.37101 * 119.99900 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00198 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99839 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00134 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00175 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46780 * 89.99802 * 25 23 21 27 27 H 1.48493 * 109.47362 * 209.99891 * 25 23 21 28 28 H 1.48499 * 109.46983 * 330.00252 * 25 23 21 29 29 C 1.52996 * 109.47166 * 299.99646 * 7 6 5 30 30 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47392 * 300.00122 * 1 2 3 32 32 H 1.09008 * 109.47191 * 60.00215 * 1 2 3 33 33 H 1.08998 * 109.47559 * 300.00107 * 4 2 1 34 34 H 1.09003 * 109.47049 * 59.99945 * 4 2 1 35 35 H 1.09003 * 109.47064 * 60.00011 * 5 4 2 36 36 H 1.08994 * 109.47116 * 180.02562 * 5 4 2 37 37 H 1.08994 * 109.47320 * 299.99601 * 6 5 4 38 38 H 1.09001 * 109.47245 * 179.97438 * 6 5 4 39 39 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 40 40 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 41 41 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 42 42 H 1.08998 * 109.47382 * 300.00439 * 13 12 11 43 43 H 1.09005 * 109.46800 * 60.00640 * 13 12 11 44 44 H 1.08992 * 109.47143 * 300.00104 * 14 13 12 45 45 H 1.08997 * 109.46799 * 60.00311 * 14 13 12 46 46 H 1.09002 * 109.46656 * 59.99564 * 16 15 14 47 47 H 1.08996 * 109.47468 * 179.97438 * 16 15 14 48 48 H 1.09000 * 109.47184 * 300.00164 * 16 15 14 49 49 H 1.09006 * 109.47071 * 290.00136 * 17 15 14 50 50 H 1.09000 * 109.46924 * 50.00079 * 17 15 14 51 51 H 0.96997 * 119.99807 * 359.97438 * 20 18 17 52 52 H 0.96998 * 120.00203 * 179.97438 * 24 23 21 53 53 H 1.09000 * 109.47234 * 179.97438 * 29 7 6 54 54 H 1.08994 * 109.47089 * 300.00072 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7219 1.2491 6 6 4.0794 -1.4435 -0.0001 7 6 3.5695 -0.7223 -1.2494 8 1 3.9328 -1.2361 -2.1394 9 6 4.0723 0.6984 -1.2497 10 8 3.2846 1.6206 -1.2497 11 7 5.3975 0.9442 -1.2443 12 6 5.8863 2.3252 -1.2386 13 6 7.4163 2.3247 -1.2338 14 6 7.9268 3.7670 -1.2285 15 7 9.3958 3.7665 -1.2233 16 6 9.9265 3.2126 -2.4762 17 6 9.9219 5.1162 -0.9799 18 6 11.4074 5.0402 -0.7376 19 8 11.9723 3.9673 -0.7655 20 7 12.1081 6.1646 -0.4900 21 6 13.4594 6.0954 -0.2690 22 1 13.9625 5.1400 -0.2938 23 6 14.1820 7.2545 -0.0143 24 7 15.4771 7.1882 0.1980 25 14 13.3123 8.9073 0.0265 26 1 12.8490 9.1888 1.4091 27 1 14.2522 9.9720 -0.4071 28 1 12.1443 8.8747 -0.8899 29 6 2.0395 -0.7217 -1.2492 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 1.6766 -0.2074 2.1393 34 1 1.6765 -1.7489 1.2493 35 1 3.9337 0.3057 1.2488 36 1 3.9332 -1.2361 2.1388 37 1 3.7157 -2.4710 0.0001 38 1 5.1694 -1.4436 -0.0006 39 1 6.0276 0.2067 -1.2444 40 1 5.5263 2.8418 -2.1283 41 1 5.5200 2.8365 -0.3484 42 1 7.7767 1.8079 -0.3444 43 1 7.7822 1.8135 -2.1244 44 1 7.5664 4.2832 -2.1182 45 1 7.5609 4.2785 -0.3383 46 1 9.5800 3.8157 -3.3155 47 1 11.0160 3.2243 -2.4460 48 1 9.5770 2.1872 -2.5969 49 1 9.7273 5.7443 -1.8493 50 1 9.4325 5.5446 -0.1052 51 1 11.6564 7.0226 -0.4681 52 1 15.9815 7.9975 0.3755 53 1 1.6762 -0.2075 -2.1390 54 1 1.6758 -1.7492 -1.2490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265029147.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:20 Heat of formation + Delta-G solvation = -115.572810 kcal Electronic energy + Delta-G solvation = -29402.034038 eV Core-core repulsion = 25371.778828 eV Total energy + Delta-G solvation = -4030.255210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52259 -40.50664 -38.72711 -38.10507 -36.24231 -35.81150 -33.87770 -33.73844 -32.37866 -31.76348 -29.48964 -27.71518 -27.18706 -26.48449 -24.67734 -23.37570 -22.71118 -21.99910 -21.46569 -21.23807 -20.28435 -20.11339 -17.85272 -17.46344 -17.15034 -16.94013 -16.80131 -16.63093 -16.22167 -15.99644 -15.62457 -15.40710 -15.31761 -15.01385 -14.87983 -14.70416 -14.41721 -14.28359 -14.16091 -13.71004 -13.39828 -13.24951 -13.09497 -13.01353 -12.95830 -12.78289 -12.69148 -12.65255 -12.49795 -12.40980 -12.33422 -12.30382 -11.97450 -11.83551 -11.67092 -11.47752 -11.45636 -10.99601 -10.91821 -10.46823 -10.34364 -10.22263 -9.99229 -9.19931 -8.40511 -6.00995 1.30416 1.35809 1.44386 1.71695 1.97267 2.21154 2.23456 2.68619 3.15412 3.27679 3.67190 3.78471 3.80822 3.97110 4.00493 4.09296 4.13435 4.22371 4.26076 4.31438 4.39607 4.43804 4.50045 4.51902 4.54465 4.60730 4.64008 4.64822 4.70700 4.75993 4.81313 4.83577 4.94709 4.96984 5.08214 5.09561 5.11920 5.17765 5.20590 5.30412 5.32661 5.33209 5.41149 5.46688 5.52950 5.54099 5.74390 5.91001 6.02550 6.21711 6.61034 6.61608 6.89796 7.33747 7.41343 7.98807 8.77110 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026244 B = 0.001577 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.646589 B =17750.457021 C =17956.693018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.125 4.125 6 C -0.106 4.106 7 C -0.106 4.106 8 H 0.119 0.881 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.722 5.722 12 C 0.129 3.871 13 C -0.114 4.114 14 C 0.059 3.941 15 N -0.540 5.540 16 C 0.024 3.976 17 C 0.053 3.947 18 C 0.451 3.549 19 O -0.604 6.604 20 N -0.593 5.593 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.232 1.232 29 C -0.091 4.091 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.413 0.587 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.031 0.969 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.119 0.881 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.052 0.948 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.390 -14.799 -3.012 34.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.143 4.143 7 C -0.127 4.127 8 H 0.137 0.863 9 C 0.302 3.698 10 O -0.456 6.456 11 N -0.374 5.374 12 C 0.004 3.996 13 C -0.153 4.153 14 C -0.069 4.069 15 N -0.265 5.265 16 C -0.124 4.124 17 C -0.078 4.078 18 C 0.239 3.761 19 O -0.488 6.488 20 N -0.235 5.235 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.156 1.156 29 C -0.129 4.129 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.249 0.751 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.104 0.896 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.101 0.899 49 H 0.094 0.906 50 H 0.137 0.863 51 H 0.224 0.776 52 H 0.088 0.912 53 H 0.071 0.929 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -31.207 -15.066 -2.608 34.752 hybrid contribution 0.530 1.461 -0.486 1.628 sum -30.677 -13.605 -3.094 33.701 Atomic orbital electron populations 1.21770 0.95101 1.01917 1.01128 1.21354 0.95738 1.00631 0.94965 0.91518 1.21583 0.95261 1.00942 0.97084 1.21575 0.96066 0.99779 0.98809 1.21559 1.01180 0.99961 0.91638 1.21453 0.97730 0.91518 1.02006 0.86349 1.21158 0.81927 0.92318 0.74367 1.90629 1.56017 1.47958 1.51043 1.45998 1.07222 1.09168 1.75008 1.21133 0.93602 0.83226 1.01609 1.21627 0.92823 0.97035 1.03769 1.22084 0.85397 0.97316 1.02090 1.61489 1.07911 1.20711 1.36359 1.22466 1.00918 1.00315 0.88703 1.21839 0.90721 0.91539 1.03703 1.20902 0.90287 0.83638 0.81261 1.90511 1.72653 1.29876 1.55802 1.42053 1.07447 1.08468 1.65577 1.19000 0.83326 0.95716 1.47577 0.92604 1.26085 0.96127 1.03035 0.96060 1.69799 1.08231 1.31131 1.48394 0.85382 0.79307 0.76699 0.80242 1.18180 1.20081 1.15562 1.21370 0.92567 1.01194 0.97743 0.91768 0.93191 0.93495 0.92875 0.90728 0.94324 0.90799 0.88810 0.90279 0.75071 0.92185 0.92369 0.90647 0.90518 0.93485 0.89637 0.95081 0.93059 0.89912 0.90597 0.86274 0.77583 0.91196 0.92906 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 71.98 0.66 -1.28 16 2 C -0.11 -1.70 2.43 -10.79 -0.03 -1.72 16 3 H 0.07 1.52 5.51 -2.39 -0.01 1.51 16 4 C -0.11 -1.41 5.20 30.60 0.16 -1.25 16 5 C -0.12 -1.52 5.70 30.59 0.17 -1.35 16 6 C -0.11 -0.87 5.35 30.59 0.16 -0.70 16 7 C -0.11 -1.16 3.01 -11.54 -0.03 -1.20 16 8 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 9 C 0.51 8.96 5.64 87.66 0.49 9.46 16 10 O -0.58 -14.86 13.66 -3.04 -0.04 -14.90 16 11 N -0.72 -10.09 5.44 -463.06 -2.52 -12.61 16 12 C 0.13 2.07 5.67 86.38 0.49 2.56 16 13 C -0.11 -1.85 5.25 30.59 0.16 -1.69 16 14 C 0.06 1.16 4.96 86.30 0.43 1.59 16 15 N -0.54 -15.52 4.50 -927.04 -4.17 -19.69 16 16 C 0.02 0.69 8.96 127.69 1.14 1.84 16 17 C 0.05 1.62 5.45 85.56 0.47 2.09 16 18 C 0.45 20.28 7.47 87.66 0.66 20.93 16 19 O -0.60 -33.06 13.91 -3.06 -0.04 -33.10 16 20 N -0.59 -27.97 5.09 -306.99 -1.56 -29.53 16 21 C -0.33 -19.15 10.16 84.04 0.85 -18.30 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.93 -56.41 13.96 21.66 0.30 -56.10 16 25 Si 0.96 38.83 27.74 68.60 1.90 40.73 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 29 C -0.09 -1.16 4.37 30.59 0.13 -1.03 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.04 0.65 7.22 -2.39 -0.02 0.63 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 0.48 7.55 -2.39 -0.02 0.46 16 39 H 0.41 3.70 7.88 -92.71 -0.73 2.97 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.17 6.55 -2.38 -0.02 1.16 16 44 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 45 H 0.09 1.54 7.93 -2.39 -0.02 1.52 16 46 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.05 1.97 5.82 -2.39 -0.01 1.96 16 48 H 0.08 2.00 6.47 -2.39 -0.02 1.98 16 49 H 0.08 1.95 8.12 -2.38 -0.02 1.93 16 50 H 0.12 2.97 7.93 -2.39 -0.02 2.95 16 51 H 0.39 15.18 5.76 -92.71 -0.53 14.64 16 52 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 53 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 54 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -80.04 413.88 -0.18 -80.21 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.44 Total: 35.37 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 6.39 Total: 9.61 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -7.95 Total: -117.93 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -0.08 Total: -48.00 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.73 kcal Total: -80.04 -0.18 -80.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265029147.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.358 kcal (2) G-P(sol) polarization free energy of solvation -80.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds