Wall clock time and date at job start Sat Apr 11 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47078 * 2 1 4 4 C 1.53000 * 109.46861 * 239.99470 * 2 1 3 5 5 C 1.52999 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47563 * 60.00507 * 5 4 2 7 7 C 1.53008 * 109.46852 * 299.99921 * 6 5 4 8 8 H 1.09000 * 109.46974 * 299.99604 * 7 6 5 9 9 C 1.50702 * 109.47319 * 179.97438 * 7 6 5 10 10 O 1.21276 * 120.00025 * 240.00420 * 9 7 6 11 11 N 1.34774 * 119.99866 * 59.99951 * 9 7 6 12 12 C 1.46500 * 120.00019 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47287 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47211 * 179.97438 * 13 12 11 15 15 N 1.46907 * 109.47309 * 180.02562 * 14 13 12 16 16 C 1.46899 * 110.99599 * 66.05074 * 15 14 13 17 17 C 1.46895 * 111.00018 * 190.00145 * 15 14 13 18 18 C 1.50706 * 109.47182 * 170.00113 * 17 15 14 19 19 O 1.21297 * 119.99667 * 0.02562 * 18 17 15 20 20 N 1.34773 * 120.00081 * 179.72734 * 18 17 15 21 21 C 1.37095 * 119.99878 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00160 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00380 * 179.97438 * 21 20 18 24 24 N 1.31404 * 120.00261 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99599 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47644 * 89.99834 * 25 23 21 27 27 H 1.48506 * 109.47143 * 209.99780 * 25 23 21 28 28 H 1.48501 * 109.47120 * 329.99495 * 25 23 21 29 29 C 1.52999 * 109.46972 * 59.99717 * 7 6 5 30 30 H 1.08997 * 109.47376 * 300.00488 * 1 2 3 31 31 H 1.09005 * 109.46940 * 60.00121 * 1 2 3 32 32 H 1.09000 * 109.47584 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47707 * 300.00144 * 4 2 1 34 34 H 1.09002 * 109.47328 * 60.00869 * 4 2 1 35 35 H 1.09001 * 109.47132 * 180.02562 * 5 4 2 36 36 H 1.09006 * 109.47236 * 299.99781 * 5 4 2 37 37 H 1.09000 * 109.47516 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47008 * 59.99505 * 6 5 4 39 39 H 0.97006 * 120.00333 * 359.97438 * 11 9 7 40 40 H 1.09000 * 109.46951 * 59.99742 * 12 11 9 41 41 H 1.08997 * 109.46765 * 300.00088 * 12 11 9 42 42 H 1.09000 * 109.47063 * 60.00145 * 13 12 11 43 43 H 1.09001 * 109.47469 * 300.00444 * 13 12 11 44 44 H 1.08998 * 109.46991 * 60.00718 * 14 13 12 45 45 H 1.08996 * 109.47698 * 300.00268 * 14 13 12 46 46 H 1.08998 * 109.47218 * 183.95834 * 16 15 14 47 47 H 1.09004 * 109.47214 * 303.95234 * 16 15 14 48 48 H 1.08996 * 109.47566 * 63.95524 * 16 15 14 49 49 H 1.09001 * 109.47613 * 50.00459 * 17 15 14 50 50 H 1.08998 * 109.47678 * 290.00354 * 17 15 14 51 51 H 0.96998 * 120.00525 * 359.97438 * 20 18 17 52 52 H 0.97009 * 120.00065 * 180.02562 * 24 23 21 53 53 H 1.09000 * 109.47363 * 60.00125 * 29 7 6 54 54 H 1.08997 * 109.47225 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2488 6 6 4.0795 -1.4435 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9332 0.3054 1.2498 9 6 4.0708 -1.4332 2.4802 10 8 3.2820 -1.8938 3.2780 11 7 5.3957 -1.5573 2.6939 12 6 5.8830 -2.2490 3.8898 13 6 7.4130 -2.2505 3.8902 14 6 7.9220 -2.9723 5.1395 15 7 9.3911 -2.9732 5.1402 16 6 9.9182 -1.6098 5.2853 17 6 9.9164 -3.8553 6.1908 18 6 11.4028 -4.0243 6.0080 19 8 11.9688 -3.4646 5.0928 20 7 12.1041 -4.7926 6.8649 21 6 13.4563 -4.9459 6.6989 22 1 13.9595 -4.4514 5.8812 23 6 14.1795 -5.7375 7.5827 24 7 15.4755 -5.8849 7.4232 25 14 13.3091 -6.5935 8.9966 26 1 12.8524 -7.9362 8.5567 27 1 14.2463 -6.7393 10.1393 28 1 12.1367 -5.7853 9.4180 29 6 2.0394 -0.7216 1.2493 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6766 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.9333 -1.2354 -2.1390 36 1 3.9337 0.3057 -1.2487 37 1 5.1695 -1.4435 0.0008 38 1 3.7157 -2.4710 0.0002 39 1 6.0266 -1.1893 2.0556 40 1 5.5190 -3.2764 3.8890 41 1 5.5196 -1.7355 4.7800 42 1 7.7774 -1.2232 3.8909 43 1 7.7761 -2.7642 3.0000 44 1 7.5578 -3.9996 5.1393 45 1 7.5590 -2.4583 6.0295 46 1 11.0055 -1.6309 5.2123 47 1 9.5133 -0.9776 4.4949 48 1 9.6270 -1.2090 6.2561 49 1 9.4295 -4.8283 6.1255 50 1 9.7183 -3.4148 7.1679 51 1 11.6523 -5.2365 7.5996 52 1 15.9803 -6.4378 8.0400 53 1 1.6757 -1.7491 1.2491 54 1 1.6761 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265029148.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:23 Heat of formation + Delta-G solvation = -121.788298 kcal Electronic energy + Delta-G solvation = -28872.484620 eV Core-core repulsion = 24841.959887 eV Total energy + Delta-G solvation = -4030.524733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25566 -40.49778 -39.00696 -38.25606 -36.27886 -35.81347 -33.85087 -33.73691 -32.50953 -31.73289 -29.48795 -27.73565 -27.20787 -26.48020 -24.75144 -23.38424 -22.60029 -22.03549 -21.23901 -20.96543 -20.58072 -20.15117 -17.94312 -17.85086 -17.12679 -16.94918 -16.80063 -16.52373 -16.13572 -15.98467 -15.62330 -15.44335 -15.23005 -15.11038 -14.88905 -14.74794 -14.61908 -14.28967 -14.08511 -13.71188 -13.58999 -13.32448 -13.26092 -13.07537 -12.82931 -12.73437 -12.69969 -12.51467 -12.40891 -12.36656 -12.31246 -12.11955 -11.97190 -11.85490 -11.63139 -11.46355 -11.45248 -11.34486 -10.97598 -10.65163 -10.35113 -10.22182 -10.08442 -9.19568 -8.40334 -6.00778 1.30622 1.36025 1.44568 1.63408 1.97566 2.15944 2.23565 2.67911 3.15654 3.27820 3.62051 3.70810 3.76345 3.96653 4.01682 4.12909 4.15362 4.17841 4.21682 4.31531 4.39589 4.41419 4.43962 4.53031 4.54036 4.57175 4.61127 4.64565 4.67864 4.74859 4.79279 4.81190 4.88366 4.98832 5.10052 5.11056 5.16282 5.19928 5.20800 5.30352 5.30471 5.34966 5.39017 5.42933 5.47480 5.54255 5.61364 5.91270 6.02706 6.21858 6.55608 6.61372 6.90090 7.25504 7.41629 7.99146 8.77314 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032153 B = 0.001446 C = 0.001418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.625189 B =19357.922815 C =19746.845511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.108 4.108 7 C -0.100 4.100 8 H 0.117 0.883 9 C 0.512 3.488 10 O -0.588 6.588 11 N -0.719 5.719 12 C 0.127 3.873 13 C -0.115 4.115 14 C 0.058 3.942 15 N -0.540 5.540 16 C 0.023 3.977 17 C 0.053 3.947 18 C 0.451 3.549 19 O -0.605 6.605 20 N -0.593 5.593 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.257 1.257 27 H -0.276 1.276 28 H -0.232 1.232 29 C -0.091 4.091 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.415 0.585 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.084 0.916 48 H 0.029 0.971 49 H 0.120 0.880 50 H 0.076 0.924 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.050 0.950 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.226 11.735 -12.438 35.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.146 4.146 7 C -0.121 4.121 8 H 0.135 0.865 9 C 0.299 3.701 10 O -0.468 6.468 11 N -0.371 5.371 12 C 0.002 3.998 13 C -0.153 4.153 14 C -0.069 4.069 15 N -0.265 5.265 16 C -0.125 4.125 17 C -0.078 4.078 18 C 0.239 3.761 19 O -0.489 6.489 20 N -0.235 5.235 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.201 1.201 28 H -0.156 1.156 29 C -0.129 4.129 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.048 0.952 49 H 0.137 0.863 50 H 0.094 0.906 51 H 0.224 0.776 52 H 0.088 0.912 53 H 0.068 0.932 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -31.039 11.514 -12.871 35.519 hybrid contribution 0.459 -0.319 1.485 1.587 sum -30.579 11.195 -11.386 34.497 Atomic orbital electron populations 1.21823 0.94995 1.01691 1.02028 1.21136 0.95749 0.99777 0.93981 0.90229 1.21636 0.95789 1.00467 0.97523 1.21523 0.95372 1.01401 0.96973 1.21540 1.01272 0.98944 0.92825 1.21382 0.97502 1.01305 0.91888 0.86497 1.21242 0.82086 0.79041 0.87690 1.90682 1.56472 1.50616 1.49004 1.45983 1.07090 1.58330 1.25696 1.21181 0.93750 0.97129 0.87736 1.21637 0.92686 1.01949 0.99016 1.22083 0.85415 1.01922 0.97514 1.61486 1.08014 1.10020 1.46963 1.22478 1.01132 0.88735 1.00136 1.21846 0.90702 1.00329 0.94909 1.20909 0.90313 0.81615 0.83261 1.90510 1.72663 1.50818 1.34887 1.42049 1.07357 1.45977 1.28150 1.19004 0.83241 1.29708 1.13692 0.92602 1.26077 0.96109 0.97740 1.01316 1.69802 1.08188 1.40097 1.39494 0.85383 0.79313 0.79554 0.77387 1.18187 1.20087 1.15563 1.21357 0.92799 1.00684 0.98077 0.92904 0.91644 0.93242 0.92698 0.90891 0.90855 0.90563 0.90025 0.92682 0.74861 0.92170 0.92074 0.90442 0.90530 0.89552 0.93468 0.93021 0.89729 0.95227 0.86251 0.90590 0.77576 0.91196 0.93158 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.09 -0.85 2.72 -10.79 -0.03 -0.88 16 3 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 4 C -0.12 -0.96 5.20 30.59 0.16 -0.81 16 5 C -0.12 -0.80 5.92 30.59 0.18 -0.62 16 6 C -0.11 -1.00 5.10 30.60 0.16 -0.84 16 7 C -0.10 -1.19 2.53 -11.54 -0.03 -1.22 16 8 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 9 C 0.51 9.41 7.15 87.66 0.63 10.04 16 10 O -0.59 -16.21 15.98 -3.02 -0.05 -16.26 16 11 N -0.72 -10.24 5.45 -463.07 -2.52 -12.76 16 12 C 0.13 2.05 5.67 86.38 0.49 2.54 16 13 C -0.11 -1.84 5.26 30.59 0.16 -1.68 16 14 C 0.06 1.14 4.96 86.30 0.43 1.57 16 15 N -0.54 -15.47 4.50 -927.06 -4.17 -19.64 16 16 C 0.02 0.67 9.01 127.69 1.15 1.82 16 17 C 0.05 1.62 5.45 85.56 0.47 2.09 16 18 C 0.45 20.26 7.51 87.66 0.66 20.91 16 19 O -0.60 -33.07 13.88 -3.08 -0.04 -33.11 16 20 N -0.59 -27.93 5.09 -306.98 -1.56 -29.49 16 21 C -0.33 -19.15 10.16 84.04 0.85 -18.30 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.93 -56.40 13.96 21.66 0.30 -56.09 16 25 Si 0.96 38.79 27.74 68.60 1.90 40.69 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 27 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 29 C -0.09 -1.29 3.77 30.59 0.12 -1.17 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 36 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.08 0.54 7.56 -2.39 -0.02 0.52 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.41 3.69 7.89 -92.70 -0.73 2.95 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.17 6.47 -2.39 -0.02 1.15 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.53 7.93 -2.39 -0.02 1.52 16 45 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 46 H 0.05 1.99 5.88 -2.39 -0.01 1.97 16 47 H 0.08 2.00 6.30 -2.38 -0.02 1.98 16 48 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.12 2.97 7.93 -2.39 -0.02 2.95 16 50 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 51 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16 52 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 53 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 54 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -80.59 420.30 -0.07 -80.66 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.45 Total: 33.63 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.52 Total: 12.38 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -7.96 Total: -117.99 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.09 Total: -49.37 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.69 kcal Total: -80.59 -0.07 -80.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265029148.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.124 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds