Wall clock time and date at job start Sat Apr 11 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47368 * 2 1 4 4 C 1.53000 * 109.47328 * 240.00211 * 2 1 3 5 5 C 1.52996 * 109.47518 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46972 * 59.99713 * 5 4 2 7 7 C 1.52997 * 109.47415 * 300.00140 * 6 5 4 8 8 H 1.08998 * 109.47624 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47084 * 299.99965 * 7 6 5 10 10 O 1.21279 * 119.99926 * 120.00038 * 9 7 6 11 11 N 1.34775 * 119.99773 * 299.99639 * 9 7 6 12 12 C 1.46496 * 119.99642 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 N 1.46896 * 109.47114 * 179.97438 * 14 13 12 16 16 C 1.46896 * 111.00256 * 293.95380 * 15 14 13 17 17 C 1.46909 * 111.00113 * 169.99735 * 15 14 13 18 18 C 1.50695 * 109.47163 * 190.00161 * 17 15 14 19 19 O 1.21293 * 119.99982 * 0.02562 * 18 17 15 20 20 N 1.34775 * 119.99845 * 180.02562 * 18 17 15 21 21 C 1.37104 * 119.99803 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99999 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99761 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00185 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99807 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47065 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46731 * 120.00504 * 25 23 21 28 28 H 1.48497 * 109.47020 * 240.00220 * 25 23 21 29 29 C 1.53002 * 109.47346 * 119.99812 * 2 1 3 30 30 H 1.09004 * 109.47108 * 299.99899 * 1 2 3 31 31 H 1.09001 * 109.47367 * 59.99598 * 1 2 3 32 32 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46968 * 299.99723 * 4 2 1 34 34 H 1.09001 * 109.46741 * 59.99807 * 4 2 1 35 35 H 1.08992 * 109.47534 * 179.97438 * 5 4 2 36 36 H 1.09000 * 109.47054 * 300.00013 * 5 4 2 37 37 H 1.09002 * 109.47070 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.46986 * 60.00258 * 6 5 4 39 39 H 0.96998 * 120.00166 * 0.02562 * 11 9 7 40 40 H 1.09001 * 109.47464 * 60.00642 * 12 11 9 41 41 H 1.09001 * 109.47459 * 300.00357 * 12 11 9 42 42 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 43 43 H 1.08993 * 109.46955 * 60.00138 * 13 12 11 44 44 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 45 45 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 46 46 H 1.08999 * 109.47174 * 60.00032 * 16 15 14 47 47 H 1.08998 * 109.47389 * 179.97438 * 16 15 14 48 48 H 1.09008 * 109.47155 * 299.99883 * 16 15 14 49 49 H 1.08999 * 109.46856 * 310.00530 * 17 15 14 50 50 H 1.09001 * 109.46406 * 70.00169 * 17 15 14 51 51 H 0.96994 * 120.00074 * 0.02562 * 20 18 17 52 52 H 0.97000 * 120.00062 * 179.97438 * 24 23 21 53 53 H 1.09000 * 109.46986 * 60.00254 * 29 2 1 54 54 H 1.08988 * 109.47229 * 299.99867 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7204 1.2489 8 1 3.9338 -1.2341 2.1389 9 6 4.0724 0.7007 1.2486 10 8 3.2840 1.6222 1.2487 11 7 5.3974 0.9473 1.2484 12 6 5.8852 2.3287 1.2486 13 6 7.4152 2.3292 1.2476 14 6 7.9247 3.7719 1.2486 15 7 9.3937 3.7724 1.2482 16 6 9.9207 3.2149 2.5009 17 6 9.9197 5.1234 1.0108 18 6 11.4059 5.0492 0.7730 19 8 11.9713 3.9765 0.7983 20 7 12.1068 6.1750 0.5323 21 6 13.4591 6.1075 0.3165 22 1 13.9625 5.1523 0.3390 23 6 14.1815 7.2680 0.0678 24 7 13.5688 8.4303 0.0400 25 14 16.0239 7.1761 -0.2270 26 1 16.4685 5.7617 -0.1439 27 1 16.3369 7.7146 -1.5750 28 1 16.7306 7.9789 0.8031 29 6 2.0400 -0.7212 1.2493 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.9333 -1.2348 -2.1393 36 1 3.9329 0.3071 -1.2498 37 1 5.1705 -1.4408 -0.0004 38 1 3.7175 -2.4693 -0.0002 39 1 6.0279 0.2103 1.2480 40 1 5.5220 2.8421 2.1389 41 1 5.5214 2.8427 0.3590 42 1 7.7793 1.8152 2.1372 43 1 7.7781 1.8160 0.3572 44 1 7.5606 4.2864 0.3593 45 1 7.5618 4.2848 2.1392 46 1 9.5716 2.1888 2.6172 47 1 11.0103 3.2266 2.4739 48 1 9.5712 3.8150 3.3411 49 1 9.4327 5.5543 0.1360 50 1 9.7217 5.7484 1.8817 51 1 11.6547 7.0329 0.5125 52 1 14.0733 9.2404 -0.1333 53 1 1.6767 -1.7489 1.2493 54 1 1.6768 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265029150.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:29 Heat of formation + Delta-G solvation = -120.475580 kcal Electronic energy + Delta-G solvation = -29340.782575 eV Core-core repulsion = 25310.314765 eV Total energy + Delta-G solvation = -4030.467810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52127 -40.38278 -38.71261 -38.07752 -36.23089 -35.77567 -33.86910 -33.27308 -32.36477 -31.75418 -29.36032 -27.70843 -27.18584 -26.58332 -24.73499 -23.41155 -22.71132 -22.01945 -21.46760 -20.96805 -20.24781 -19.84040 -17.85718 -17.46102 -17.15387 -16.95656 -16.61699 -16.57013 -16.22592 -16.08549 -15.68823 -15.36955 -15.33885 -15.05187 -14.97417 -14.69168 -14.40762 -14.16415 -13.75063 -13.48162 -13.39065 -13.24700 -13.03866 -13.01355 -12.95497 -12.77921 -12.69078 -12.65198 -12.50437 -12.38022 -12.33182 -12.31077 -12.10585 -11.83408 -11.67675 -11.47675 -11.44891 -10.99343 -10.91730 -10.46172 -10.26592 -9.99939 -9.98667 -9.19784 -8.45760 -5.94391 1.37115 1.42253 1.56466 1.71804 2.06595 2.20098 2.30959 2.82661 3.21205 3.43593 3.67192 3.78572 3.80971 3.96830 4.01195 4.11637 4.14232 4.26153 4.28252 4.34260 4.40585 4.49126 4.50239 4.52873 4.55368 4.60870 4.64072 4.64702 4.70953 4.76402 4.80687 4.83659 4.94856 4.97004 5.08105 5.09372 5.11724 5.17862 5.20024 5.29814 5.32848 5.33386 5.41241 5.42311 5.46482 5.52926 5.74501 5.89246 6.08124 6.23177 6.61573 6.61971 7.14194 7.33902 7.57836 8.13608 8.71906 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029358 B = 0.001504 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.507096 B =18612.108920 C =18638.649933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.125 4.125 6 C -0.106 4.106 7 C -0.106 4.106 8 H 0.119 0.881 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.721 5.721 12 C 0.129 3.871 13 C -0.112 4.112 14 C 0.058 3.942 15 N -0.537 5.537 16 C 0.025 3.975 17 C 0.056 3.944 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.271 1.271 29 C -0.091 4.091 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.413 0.587 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.027 0.973 49 H 0.108 0.892 50 H 0.066 0.934 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.087 0.913 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.381 -19.125 2.177 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.163 4.163 6 C -0.143 4.143 7 C -0.127 4.127 8 H 0.137 0.863 9 C 0.302 3.698 10 O -0.457 6.457 11 N -0.373 5.373 12 C 0.004 3.996 13 C -0.151 4.151 14 C -0.070 4.070 15 N -0.261 5.261 16 C -0.123 4.123 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.129 4.129 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.250 0.750 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.126 0.874 50 H 0.084 0.916 51 H 0.229 0.771 52 H 0.086 0.914 53 H 0.106 0.894 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.323 -19.280 1.778 31.089 hybrid contribution 0.831 1.300 0.455 1.609 sum -23.493 -17.980 2.233 29.668 Atomic orbital electron populations 1.21767 0.95095 1.01932 1.01108 1.21357 0.95744 1.00621 0.95001 0.91594 1.21581 0.95259 1.00960 0.97054 1.21577 0.96071 0.99755 0.98851 1.21561 1.01190 0.99977 0.91589 1.21462 0.97732 0.91426 1.02050 0.86284 1.21180 0.81911 0.92363 0.74361 1.90630 1.55969 1.48053 1.51034 1.45985 1.07246 1.09081 1.75020 1.21124 0.93629 0.83280 1.01547 1.21613 0.92809 0.96771 1.03861 1.22087 0.85661 0.97457 1.01807 1.61512 1.07813 1.20373 1.36407 1.22465 1.01106 1.00193 0.88527 1.21746 0.91657 0.91249 1.02835 1.20771 0.90096 0.83941 0.82276 1.90456 1.72544 1.29688 1.57240 1.41955 1.08026 1.08308 1.63054 1.19705 0.84287 0.94858 1.47260 0.90244 1.26036 1.04722 0.94033 0.96547 1.69683 1.38435 0.98552 1.49618 0.84865 0.76937 0.78268 0.78223 1.19731 1.19699 1.19662 1.21381 0.92562 1.01218 0.97711 0.93531 0.93207 0.91714 0.90652 0.92916 0.90756 0.94410 0.90252 0.88732 0.75023 0.92247 0.92486 0.90357 0.90523 0.90019 0.93797 0.89720 0.92774 0.95477 0.87374 0.91644 0.77092 0.91369 0.89434 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 2 C -0.11 -1.76 2.42 -10.79 -0.03 -1.79 16 3 H 0.07 1.55 5.51 -2.39 -0.01 1.54 16 4 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16 5 C -0.12 -1.58 5.70 30.59 0.17 -1.41 16 6 C -0.11 -0.90 5.36 30.59 0.16 -0.74 16 7 C -0.11 -1.21 3.01 -11.52 -0.03 -1.24 16 8 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 9 C 0.51 9.36 5.64 87.66 0.49 9.85 16 10 O -0.58 -15.42 13.66 -3.03 -0.04 -15.46 16 11 N -0.72 -10.70 5.45 -463.06 -2.52 -13.23 16 12 C 0.13 2.25 5.67 86.38 0.49 2.75 16 13 C -0.11 -1.98 5.25 30.60 0.16 -1.82 16 14 C 0.06 1.29 4.96 86.30 0.43 1.71 16 15 N -0.54 -16.70 4.50 -927.05 -4.17 -20.88 16 16 C 0.02 0.76 8.96 127.69 1.14 1.91 16 17 C 0.06 1.95 5.45 85.55 0.47 2.41 16 18 C 0.44 21.02 7.47 87.66 0.66 21.68 16 19 O -0.61 -33.59 13.91 -3.07 -0.04 -33.63 16 20 N -0.58 -29.68 5.29 -306.99 -1.62 -31.30 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.74 5.50 84.92 0.47 -0.28 16 24 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 25 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 C -0.09 -1.20 4.38 30.61 0.13 -1.07 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.04 0.66 7.22 -2.39 -0.02 0.65 16 37 H 0.08 0.51 7.56 -2.39 -0.02 0.49 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.41 3.95 7.89 -92.71 -0.73 3.22 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.28 6.55 -2.39 -0.02 1.27 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.08 1.73 7.93 -2.39 -0.02 1.71 16 45 H 0.04 0.90 8.12 -2.38 -0.02 0.88 16 46 H 0.08 2.12 6.47 -2.39 -0.02 2.10 16 47 H 0.05 2.13 5.83 -2.39 -0.01 2.12 16 48 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.11 3.31 7.93 -2.39 -0.02 3.29 16 50 H 0.07 2.04 8.12 -2.39 -0.02 2.03 16 51 H 0.40 19.41 7.90 -92.71 -0.73 18.67 16 52 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 53 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 Total: -1.00 -72.25 417.02 -0.32 -72.57 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.58 Total: 35.30 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.35 Total: 11.25 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -8.03 Total: -115.07 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -0.08 Total: -49.09 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.25 -0.32 -72.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265029150.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.906 kcal (2) G-P(sol) polarization free energy of solvation -72.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds