Wall clock time and date at job start Sat Apr 11 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.82080 * 2 1 4 4 C 1.54381 * 109.83278 * 120.97690 * 2 1 3 5 5 C 1.55310 * 102.25231 * 140.87164 * 4 2 1 6 6 C 1.54945 * 100.93797 * 325.86891 * 5 4 2 7 7 H 1.09002 * 110.39528 * 277.48298 * 6 5 4 8 8 C 1.53002 * 110.30771 * 155.36270 * 6 5 4 9 9 C 1.52996 * 109.47457 * 177.82987 * 8 6 5 10 10 C 1.50698 * 109.47124 * 179.97438 * 9 8 6 11 11 O 1.21284 * 120.00592 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00002 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00264 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47244 * 180.02562 * 13 12 10 15 15 N 1.46900 * 109.47218 * 180.02562 * 14 13 12 16 16 C 1.46900 * 110.99876 * 294.30187 * 15 14 13 17 17 C 1.53239 * 109.34098 * 172.74649 * 16 15 14 18 18 N 1.47084 * 108.52085 * 53.82826 * 17 16 15 19 19 C 1.36935 * 120.88037 * 128.79367 * 18 17 16 20 20 H 1.08004 * 120.00145 * 206.93187 * 19 18 17 21 21 C 1.38810 * 120.00120 * 26.93992 * 19 18 17 22 22 N 1.31617 * 120.00137 * 17.11005 * 21 19 18 23 23 Si 1.86803 * 120.00101 * 197.12189 * 21 19 18 24 24 H 1.48500 * 109.47590 * 94.11949 * 23 21 19 25 25 H 1.48498 * 109.47316 * 214.12270 * 23 21 19 26 26 H 1.48501 * 109.46706 * 334.12158 * 23 21 19 27 27 C 1.47076 * 118.23715 * 308.81501 * 18 17 16 28 28 C 1.46900 * 111.00380 * 169.99781 * 15 14 13 29 29 O 1.43241 * 109.82901 * 239.11507 * 2 1 3 30 30 H 1.08997 * 109.47058 * 179.42957 * 1 2 3 31 31 H 1.09004 * 109.47345 * 299.43485 * 1 2 3 32 32 H 1.09003 * 109.47162 * 59.43472 * 1 2 3 33 33 H 1.08997 * 110.84540 * 259.06321 * 4 2 1 34 34 H 1.08997 * 110.84729 * 22.48046 * 4 2 1 35 35 H 1.09002 * 111.11991 * 207.95010 * 5 4 2 36 36 H 1.08996 * 111.12238 * 83.78510 * 5 4 2 37 37 H 1.09000 * 109.47373 * 57.82918 * 8 6 5 38 38 H 1.09004 * 109.47061 * 297.83120 * 8 6 5 39 39 H 1.08999 * 109.46700 * 60.00152 * 9 8 6 40 40 H 1.08995 * 109.47059 * 299.99870 * 9 8 6 41 41 H 0.97007 * 119.99646 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.47262 * 300.00250 * 13 12 10 43 43 H 1.09000 * 109.47244 * 60.00092 * 13 12 10 44 44 H 1.09004 * 109.46886 * 300.00101 * 14 13 12 45 45 H 1.09000 * 109.47233 * 59.99707 * 14 13 12 46 46 H 1.09006 * 109.49039 * 292.70559 * 16 15 14 47 47 H 1.08998 * 109.49425 * 52.78252 * 16 15 14 48 48 H 1.09003 * 109.62787 * 294.12151 * 17 16 15 49 49 H 1.08998 * 109.62902 * 173.53542 * 17 16 15 50 50 H 0.97004 * 120.00213 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.62963 * 291.47925 * 27 18 17 52 52 H 1.09001 * 109.79217 * 170.99045 * 27 18 17 53 53 H 1.09002 * 109.48943 * 307.21613 * 28 15 14 54 54 H 1.08997 * 109.48932 * 67.29175 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7475 1.2451 5 6 3.2731 -1.5226 0.6755 6 6 2.7747 -1.8437 -0.7560 7 1 2.1405 -2.7302 -0.7475 8 6 3.9626 -2.0507 -1.6979 9 6 3.4502 -2.4194 -3.0916 10 6 4.6202 -2.6227 -4.0194 11 8 5.7525 -2.4866 -3.6065 12 7 4.4085 -2.9567 -5.3078 13 6 5.5458 -3.1549 -6.2096 14 6 5.0335 -3.5235 -7.6034 15 7 6.1740 -3.7228 -8.5075 16 6 6.9054 -2.4662 -8.7172 17 6 8.1835 -2.7497 -9.5135 18 7 7.8179 -3.4692 -10.7432 19 6 8.2560 -3.0375 -11.9667 20 1 7.6819 -3.2581 -12.8545 21 6 9.4381 -2.3167 -12.0659 22 7 10.3027 -2.3306 -11.0735 23 14 9.8019 -1.3266 -13.6076 24 1 9.3558 0.0762 -13.4119 25 1 11.2620 -1.3487 -13.8772 26 1 9.0768 -1.9204 -14.7596 27 6 6.9688 -4.6641 -10.6240 28 6 5.7385 -4.3052 -9.7839 29 8 2.0159 -0.6917 -1.1564 30 1 -0.3633 -1.0276 -0.0102 31 1 -0.3634 0.5050 0.8950 32 1 -0.3634 0.5226 -0.8849 33 1 2.3671 -0.0440 2.0165 34 1 1.3000 -1.4336 1.6313 35 1 3.4572 -2.4358 1.2415 36 1 4.1620 -0.8924 0.6499 37 1 4.5919 -2.8554 -1.3176 38 1 4.5446 -1.1309 -1.7563 39 1 2.8210 -1.6147 -3.4719 40 1 2.8683 -3.3392 -3.0332 41 1 3.5029 -3.0659 -5.6380 42 1 6.1277 -2.2350 -6.2683 43 1 6.1754 -3.9593 -5.8291 44 1 4.4514 -4.4433 -7.5450 45 1 4.4041 -2.7188 -7.9836 46 1 6.2782 -1.7686 -9.2722 47 1 7.1669 -2.0322 -7.7521 48 1 8.8580 -3.3639 -8.9169 49 1 8.6709 -1.8093 -9.7707 50 1 11.1286 -1.8266 -11.1427 51 1 7.5265 -5.4623 -10.1339 52 1 6.6529 -4.9928 -11.6141 53 1 5.1537 -5.2049 -9.5923 54 1 5.1276 -3.5820 -10.3240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266297094.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:48 Heat of formation + Delta-G solvation = -90.028069 kcal Electronic energy + Delta-G solvation = -29233.436130 eV Core-core repulsion = 25204.288623 eV Total energy + Delta-G solvation = -4029.147507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.97798 -40.39625 -39.70356 -36.88015 -35.41517 -34.88849 -33.30909 -33.16901 -31.69387 -31.65869 -30.24572 -28.03447 -26.96104 -25.05009 -24.33299 -23.92314 -22.57413 -22.42785 -21.61040 -21.08511 -20.80735 -18.75270 -18.09176 -17.94131 -17.31211 -16.89462 -16.77114 -16.61535 -16.06549 -15.89158 -15.39808 -15.32824 -15.25308 -15.18711 -14.88256 -14.59047 -14.57521 -14.30309 -14.17311 -13.90879 -13.32220 -13.22130 -13.06906 -13.01573 -12.83474 -12.64442 -12.63747 -12.61315 -12.55927 -12.22193 -12.04800 -12.01260 -11.86906 -11.78564 -11.68796 -11.59056 -11.56968 -11.43458 -10.88570 -10.60521 -10.41740 -10.09402 -9.31667 -8.69827 -7.88618 -5.34007 1.45759 1.46932 1.56607 1.66182 2.09909 2.49960 2.84832 3.08736 3.26967 3.59396 3.66483 3.73256 3.82411 3.88908 3.91541 4.06657 4.15594 4.18376 4.28785 4.33545 4.35490 4.42425 4.45359 4.51159 4.53868 4.57845 4.64106 4.69862 4.74568 4.78447 4.80379 4.84254 4.92179 4.93152 4.99501 5.00806 5.03457 5.08248 5.14115 5.19537 5.26228 5.32381 5.35571 5.38097 5.43282 5.60356 5.65379 6.12572 6.19958 6.22063 6.36058 6.57376 7.11649 7.28611 7.82639 8.37258 9.18384 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024075 B = 0.001554 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.756076 B =18013.772933 C =18280.118530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.065 3.935 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.154 4.154 6 C 0.081 3.919 7 H 0.087 0.913 8 C -0.100 4.100 9 C -0.125 4.125 10 C 0.506 3.494 11 O -0.591 6.591 12 N -0.716 5.716 13 C 0.129 3.871 14 C 0.055 3.945 15 N -0.543 5.543 16 C 0.050 3.950 17 C 0.185 3.815 18 N -0.614 5.614 19 C -0.264 4.264 20 H 0.071 0.929 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.141 3.859 28 C 0.058 3.942 29 O -0.396 6.396 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.418 0.582 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.045 0.955 46 H 0.023 0.977 47 H 0.073 0.927 48 H -0.004 1.004 49 H 0.054 0.946 50 H 0.250 0.750 51 H 0.015 0.985 52 H 0.064 0.936 53 H 0.102 0.898 54 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.635 0.079 24.425 34.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.008 3.992 3 H 0.091 0.909 4 C -0.183 4.183 5 C -0.192 4.192 6 C 0.024 3.976 7 H 0.104 0.896 8 C -0.138 4.138 9 C -0.165 4.165 10 C 0.294 3.706 11 O -0.472 6.472 12 N -0.369 5.369 13 C 0.004 3.996 14 C -0.073 4.073 15 N -0.269 5.269 16 C -0.079 4.079 17 C 0.059 3.941 18 N -0.338 5.338 19 C -0.394 4.394 20 H 0.088 0.912 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.015 3.985 28 C -0.071 4.071 29 O -0.317 6.317 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.140 0.860 41 H 0.255 0.745 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.122 0.878 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.014 0.986 49 H 0.072 0.928 50 H 0.059 0.941 51 H 0.033 0.967 52 H 0.082 0.918 53 H 0.120 0.880 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -23.417 -0.043 24.685 34.025 hybrid contribution 0.245 1.165 -1.253 1.728 sum -23.172 1.122 23.432 32.973 Atomic orbital electron populations 1.22115 0.94076 1.02693 1.02661 1.22869 0.95001 0.96251 0.85124 0.90911 1.23180 0.97658 0.99939 0.97557 1.23320 0.98582 1.01942 0.95339 1.23060 0.91752 0.89433 0.93333 0.89558 1.21448 0.96619 1.02179 0.93553 1.21619 0.95333 1.05664 0.93841 1.21444 0.91328 0.74961 0.82849 1.90709 1.26771 1.52741 1.76939 1.45836 1.10583 1.70765 1.09754 1.21090 0.88820 1.00469 0.89236 1.22190 0.92106 1.02208 0.90791 1.61758 1.24561 1.26604 1.13941 1.22604 0.96230 0.90153 0.98944 1.20588 0.92088 0.95862 0.85545 1.44400 1.58599 1.27833 1.02976 1.19579 1.02321 1.30824 0.86707 0.91179 1.25840 0.95022 1.03330 1.00643 1.70206 1.09320 1.44271 1.34541 0.85214 0.76579 0.78732 0.79693 1.21379 1.22200 1.18977 1.21171 0.91043 0.88535 0.97713 1.22478 0.96633 0.99277 0.88707 1.88419 1.70828 1.41012 1.31393 0.92071 0.90156 0.92736 0.89129 0.89248 0.88406 0.91057 0.90237 0.92910 0.87407 0.85968 0.74520 0.93633 0.92361 0.87813 0.93644 0.95920 0.90849 0.98593 0.92758 0.94115 0.96702 0.91760 0.88020 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.44 71.98 0.68 -0.77 16 2 C 0.06 0.77 4.16 31.06 0.13 0.90 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.15 -1.19 6.55 31.86 0.21 -0.98 16 5 C -0.15 -1.59 6.57 32.05 0.21 -1.38 16 6 C 0.08 1.04 3.43 31.26 0.11 1.15 16 7 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 8 C -0.10 -1.66 4.25 30.59 0.13 -1.53 16 9 C -0.13 -1.84 5.61 29.85 0.17 -1.68 16 10 C 0.51 11.72 7.83 87.66 0.69 12.40 16 11 O -0.59 -19.85 15.98 -3.04 -0.05 -19.90 16 12 N -0.72 -14.04 5.56 -463.06 -2.57 -16.61 16 13 C 0.13 3.36 5.60 86.38 0.48 3.84 16 14 C 0.06 1.32 5.08 86.30 0.44 1.76 16 15 N -0.54 -18.29 4.63 -895.25 -4.14 -22.44 16 16 C 0.05 2.00 5.46 86.38 0.47 2.47 16 17 C 0.19 9.50 5.42 86.35 0.47 9.96 16 18 N -0.61 -32.00 3.04 -698.13 -2.12 -34.11 16 19 C -0.26 -14.87 9.63 84.03 0.81 -14.06 16 20 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 21 C -0.05 -3.04 4.93 84.86 0.42 -2.62 16 22 N -0.94 -57.32 11.19 21.65 0.24 -57.08 16 23 Si 0.97 45.74 29.59 68.60 2.03 47.77 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 C 0.14 5.93 6.69 86.35 0.58 6.51 16 28 C 0.06 1.90 5.62 86.38 0.49 2.38 16 29 O -0.40 -6.46 10.35 -148.98 -1.54 -8.01 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.09 0.53 7.85 -2.39 -0.02 0.51 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 37 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 39 H 0.11 1.47 7.91 -2.39 -0.02 1.45 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.42 4.95 8.47 -92.70 -0.79 4.17 16 42 H 0.05 1.42 6.40 -2.38 -0.02 1.41 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 44 H 0.10 1.93 7.97 -2.38 -0.02 1.91 16 45 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 46 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.07 2.77 6.16 -2.39 -0.01 2.76 16 48 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 49 H 0.05 3.11 6.15 -2.39 -0.01 3.10 16 50 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 51 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 52 H 0.06 2.55 7.96 -2.39 -0.02 2.53 16 53 H 0.10 2.57 7.99 -2.39 -0.02 2.55 16 54 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.48 419.17 -1.61 -77.09 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.07 Total: 14.95 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.47 Total: 18.34 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -8.59 Total: -130.24 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.59 Total: -27.91 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -75.48 -1.61 -77.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266297094.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.938 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds