Wall clock time and date at job start Sat Apr 11 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50709 * 109.47078 * 2 1 4 4 O 1.21278 * 119.99587 * 359.97438 * 3 2 1 5 5 N 1.34770 * 119.99948 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63444 * 5.54437 * 5 3 2 7 7 C 1.53194 * 108.77775 * 233.63401 * 6 5 3 8 8 C 1.53042 * 109.30716 * 305.36109 * 7 6 5 9 9 C 1.53345 * 109.60946 * 61.37671 * 8 7 6 10 10 C 1.46926 * 120.63198 * 185.56604 * 5 3 2 11 11 H 1.09005 * 109.58890 * 246.15966 * 10 5 3 12 12 C 1.52997 * 109.58477 * 6.43877 * 10 5 3 13 13 N 1.46904 * 109.47118 * 178.22989 * 12 10 5 14 14 C 1.46903 * 110.99938 * 185.01923 * 13 12 10 15 15 C 1.50694 * 109.47089 * 179.97438 * 14 13 12 16 16 O 1.21279 * 120.00247 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00136 * 180.02562 * 15 14 13 18 18 C 1.46495 * 119.99780 * 359.97438 * 17 15 14 19 19 C 1.53000 * 109.47076 * 90.00250 * 18 17 15 20 20 C 1.46500 * 119.99908 * 180.02562 * 17 15 14 21 21 C 1.50693 * 109.47617 * 89.99735 * 20 17 15 22 22 H 1.08003 * 119.99771 * 359.97438 * 21 20 17 23 23 C 1.37871 * 120.00231 * 179.97438 * 21 20 17 24 24 N 1.31518 * 119.99994 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99985 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47105 * 89.99920 * 25 23 21 27 27 H 1.48500 * 109.47254 * 209.99397 * 25 23 21 28 28 H 1.48496 * 109.47282 * 329.99912 * 25 23 21 29 29 H 1.09005 * 109.46635 * 300.00391 * 1 2 3 30 30 H 1.08991 * 109.46904 * 60.00201 * 1 2 3 31 31 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47130 * 240.00089 * 2 1 3 33 33 H 1.08999 * 109.47105 * 119.99561 * 2 1 3 34 34 H 1.09007 * 109.58464 * 353.41546 * 6 5 3 35 35 H 1.08996 * 109.59338 * 113.83909 * 6 5 3 36 36 H 1.08996 * 109.50000 * 65.30807 * 7 6 5 37 37 H 1.08994 * 109.49741 * 185.41357 * 7 6 5 38 38 H 1.09006 * 109.45598 * 181.38760 * 8 7 6 39 39 H 1.09004 * 109.46007 * 301.34129 * 8 7 6 40 40 H 1.09001 * 109.68456 * 178.74957 * 9 8 7 41 41 H 1.08995 * 109.47575 * 58.54316 * 9 8 7 42 42 H 1.09007 * 109.47466 * 298.23038 * 12 10 5 43 43 H 1.09001 * 109.47371 * 58.22732 * 12 10 5 44 44 H 1.00901 * 110.99857 * 61.07197 * 13 12 10 45 45 H 1.09003 * 109.47453 * 300.00309 * 14 13 12 46 46 H 1.08994 * 109.46978 * 59.99831 * 14 13 12 47 47 H 1.09003 * 109.47491 * 209.99904 * 18 17 15 48 48 H 1.08996 * 109.47617 * 330.00592 * 18 17 15 49 49 H 1.09008 * 109.46960 * 299.99766 * 19 18 17 50 50 H 1.08998 * 109.47308 * 59.99457 * 19 18 17 51 51 H 1.09002 * 109.47422 * 179.97438 * 19 18 17 52 52 H 1.09003 * 109.46378 * 210.00082 * 20 17 15 53 53 H 1.08999 * 109.47267 * 329.99460 * 20 17 15 54 54 H 0.97005 * 119.99769 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.3233 0.5669 -0.1232 7 6 5.3165 0.6505 1.0402 8 6 5.9502 2.0433 1.0654 9 6 4.8610 3.1005 1.2833 10 6 3.8635 3.0410 0.1221 11 1 4.3620 3.3308 -0.8030 12 6 2.6987 3.9941 0.3972 13 7 3.2123 5.3606 0.5614 14 6 2.1367 6.2848 0.9446 15 6 2.7004 7.6732 1.1041 16 8 3.8818 7.8733 0.9165 17 7 1.8917 8.6927 1.4553 18 6 0.4646 8.4511 1.6813 19 6 0.2338 8.0986 3.1522 20 6 2.4397 10.0425 1.6097 21 6 2.3648 10.7691 0.2916 22 1 1.9507 10.2746 -0.5747 23 6 2.8247 12.0649 0.1916 24 7 2.7588 12.6992 -0.9586 25 14 3.5415 12.9199 1.6898 26 1 5.0039 12.6688 1.7506 27 1 3.2938 14.3808 1.5919 28 1 2.8968 12.3897 2.9180 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7971 -0.3871 -0.0865 35 1 4.8593 0.6547 -1.0683 36 1 4.7927 0.4722 1.9792 37 1 6.0949 -0.1010 0.9087 38 1 6.6755 2.0976 1.8773 39 1 6.4529 2.2308 0.1165 40 1 5.3137 4.0912 1.3236 41 1 4.3412 2.8990 2.2199 42 1 2.0009 3.9663 -0.4398 43 1 2.1853 3.6869 1.3084 44 1 3.6776 5.6751 -0.2769 45 1 1.3694 6.2904 0.1704 46 1 1.6981 5.9605 1.8883 47 1 -0.1002 9.3489 1.4300 48 1 0.1319 7.6248 1.0532 49 1 0.7986 7.2007 3.4036 50 1 0.5665 8.9248 3.7804 51 1 -0.8281 7.9193 3.3206 52 1 1.8619 10.5857 2.3575 53 1 3.4795 9.9780 1.9304 54 1 3.0828 13.6108 -1.0291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001402519925.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:05 Heat of formation + Delta-G solvation = -85.931435 kcal Electronic energy + Delta-G solvation = -30819.372393 eV Core-core repulsion = 26790.402530 eV Total energy + Delta-G solvation = -4028.969863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.61553 -40.76622 -38.49707 -37.20490 -36.62459 -34.87702 -34.18557 -33.48099 -32.36578 -31.81483 -30.04045 -28.37716 -26.71479 -25.20837 -24.93764 -24.38950 -23.57621 -22.54180 -21.64109 -20.12247 -19.69169 -19.11680 -18.35565 -17.77078 -17.36695 -17.03238 -16.83682 -16.58428 -16.26966 -15.51931 -15.40675 -15.22202 -15.11837 -15.00808 -14.73434 -14.66046 -14.50085 -14.39450 -14.13202 -13.76863 -13.63503 -13.52894 -13.34626 -13.18571 -13.05206 -12.97960 -12.72289 -12.55467 -12.54127 -12.38087 -12.06467 -12.03403 -11.97860 -11.91622 -11.89637 -11.75577 -11.60055 -11.41394 -10.84420 -10.67614 -10.46221 -9.58994 -9.42748 -9.21506 -8.35444 -6.40485 1.31233 1.35599 1.44223 1.65728 1.78266 1.91772 2.25295 2.29998 2.98702 3.22335 3.59666 3.66821 3.81062 3.89816 4.01336 4.05540 4.10850 4.20365 4.22204 4.28043 4.28533 4.33716 4.36966 4.43062 4.55364 4.60622 4.66656 4.69024 4.77718 4.83714 4.87121 4.90957 4.96145 4.98751 4.98946 4.99666 5.03937 5.08697 5.13190 5.22864 5.27566 5.34834 5.37954 5.45187 5.47489 5.61196 5.65405 5.86823 6.23204 6.24368 6.48868 6.60259 6.70382 7.20099 7.24182 7.42037 8.81673 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002435 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.748559 B =11494.837693 C =12381.903873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.499 3.501 4 O -0.576 6.576 5 N -0.609 5.609 6 C 0.102 3.898 7 C -0.130 4.130 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.150 3.850 11 H 0.067 0.933 12 C 0.083 3.917 13 N -0.685 5.685 14 C 0.065 3.935 15 C 0.499 3.501 16 O -0.579 6.579 17 N -0.602 5.602 18 C 0.099 3.901 19 C -0.159 4.159 20 C 0.227 3.773 21 C -0.535 4.535 22 H 0.026 0.974 23 C 0.011 3.989 24 N -0.946 5.946 25 Si 0.949 3.051 26 H -0.276 1.276 27 H -0.273 1.273 28 H -0.239 1.239 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.340 0.660 45 H 0.063 0.937 46 H 0.114 0.886 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.057 0.943 50 H 0.049 0.951 51 H 0.093 0.907 52 H 0.048 0.952 53 H 0.018 0.982 54 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 -33.010 6.480 33.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.289 3.711 4 O -0.456 6.456 5 N -0.342 5.342 6 C -0.019 4.019 7 C -0.168 4.168 8 C -0.160 4.160 9 C -0.152 4.152 10 C 0.047 3.953 11 H 0.085 0.915 12 C -0.045 4.045 13 N -0.319 5.319 14 C -0.067 4.067 15 C 0.288 3.712 16 O -0.459 6.459 17 N -0.334 5.334 18 C -0.024 4.024 19 C -0.217 4.217 20 C 0.104 3.896 21 C -0.574 4.574 22 H 0.045 0.955 23 C -0.187 4.187 24 N -0.586 5.586 25 Si 0.772 3.228 26 H -0.201 1.201 27 H -0.198 1.198 28 H -0.162 1.162 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.158 0.842 45 H 0.081 0.919 46 H 0.132 0.868 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.112 0.888 52 H 0.066 0.934 53 H 0.036 0.964 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.637 -32.390 6.949 33.133 hybrid contribution -0.040 1.437 -0.865 1.678 sum -0.677 -30.952 6.084 31.552 Atomic orbital electron populations 1.21531 0.93765 1.02473 1.01686 1.21743 0.97862 0.91699 1.06270 1.21600 0.81600 0.93126 0.74749 1.90720 1.56567 1.46798 1.51512 1.48353 1.06061 1.07526 1.72282 1.22078 0.90761 0.89671 0.99411 1.21909 0.99041 0.97191 0.98612 1.21621 0.97250 0.94667 1.02439 1.21802 0.96398 1.00098 0.96895 1.21093 0.94258 0.81215 0.98776 0.91531 1.22376 0.94564 0.85991 1.01527 1.60147 1.27990 1.02200 1.41535 1.21651 0.93416 0.88493 1.03151 1.21122 0.86264 0.87473 0.76364 1.90618 1.18199 1.85249 1.51805 1.48053 1.09807 1.08164 1.67334 1.21743 0.79832 1.02581 0.98215 1.22145 1.03369 1.01546 0.94664 1.19282 0.94549 0.80189 0.95535 1.21547 1.41255 0.98549 0.96038 0.95539 1.25862 0.95419 0.97949 0.99505 1.70056 1.48491 1.13057 1.26975 0.85693 0.79152 0.77899 0.80075 1.20133 1.19824 1.16239 0.93724 0.93807 0.89731 0.86550 0.86597 0.86628 0.90314 0.91662 0.88286 0.91292 0.91638 0.91506 0.92811 0.93543 0.91529 0.84215 0.91921 0.86779 0.90735 0.89363 0.92363 0.93139 0.88783 0.93391 0.96415 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.03 16 2 C -0.14 -1.31 4.77 29.85 0.14 -1.17 16 3 C 0.50 9.37 7.53 87.66 0.66 10.03 16 4 O -0.58 -15.77 11.53 -3.02 -0.03 -15.81 16 5 N -0.61 -10.00 2.97 -795.02 -2.36 -12.36 16 6 C 0.10 0.83 6.35 86.36 0.55 1.38 16 7 C -0.13 -1.08 6.08 30.67 0.19 -0.89 16 8 C -0.12 -1.69 5.89 30.72 0.18 -1.51 16 9 C -0.11 -2.33 5.14 30.77 0.16 -2.18 16 10 C 0.15 3.27 3.18 44.97 0.14 3.42 16 11 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 12 C 0.08 2.28 3.56 86.30 0.31 2.59 16 13 N -0.69 -21.82 5.40 -517.93 -2.80 -24.62 16 14 C 0.07 2.15 4.71 85.55 0.40 2.55 16 15 C 0.50 21.79 7.71 87.65 0.68 22.46 16 16 O -0.58 -30.56 15.78 -3.03 -0.05 -30.61 16 17 N -0.60 -26.00 2.46 -826.18 -2.03 -28.03 16 18 C 0.10 3.18 5.93 86.38 0.51 3.69 16 19 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 20 C 0.23 11.57 4.23 85.63 0.36 11.94 16 21 C -0.54 -32.64 9.94 25.60 0.25 -32.38 16 22 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 23 C 0.01 0.64 5.47 84.65 0.46 1.10 16 24 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 25 Si 0.95 45.80 27.47 68.60 1.88 47.69 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 28 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 29 H 0.04 0.70 8.10 -2.38 -0.02 0.69 16 30 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.12 0.55 7.71 -2.39 -0.02 0.53 16 33 H 0.12 0.59 7.92 -2.39 -0.02 0.57 16 34 H 0.12 0.27 5.93 -2.38 -0.01 0.25 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 1.71 7.76 -2.39 -0.02 1.69 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 1.45 6.24 -2.38 -0.01 1.43 16 43 H 0.07 1.96 7.22 -2.39 -0.02 1.94 16 44 H 0.34 11.67 8.49 -89.69 -0.76 10.91 16 45 H 0.06 1.97 7.40 -2.39 -0.02 1.95 16 46 H 0.11 3.26 7.18 -2.39 -0.02 3.25 16 47 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 48 H 0.09 2.45 6.44 -2.39 -0.02 2.44 16 49 H 0.06 1.39 7.22 -2.38 -0.02 1.37 16 50 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 53 H 0.02 0.97 6.85 -2.39 -0.02 0.96 16 54 H 0.27 16.11 8.31 -92.70 -0.77 15.34 16 Total: -1.00 -83.39 415.82 1.36 -82.03 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.05 Total: 25.85 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 6.40 Total: 16.77 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -6.89 Total: -125.91 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.08 Total: -46.42 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.69 kcal Total: -83.39 1.36 -82.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001402519925.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.900 kcal (2) G-P(sol) polarization free energy of solvation -83.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds