Wall clock time and date at job start Sat Apr 11 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.46948 * 2 1 4 4 O 1.21277 * 119.99954 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99765 * 179.97438 * 3 2 1 6 6 C 1.46495 * 119.99868 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47050 * 180.02562 * 6 5 3 8 8 C 1.52999 * 109.47282 * 180.02562 * 7 6 5 9 9 H 1.09001 * 110.34864 * 307.14191 * 8 7 6 10 10 C 1.54596 * 110.30958 * 69.28148 * 8 7 6 11 11 C 1.54936 * 102.92094 * 140.87540 * 10 8 7 12 12 N 1.48522 * 103.22897 * 322.58548 * 11 10 8 13 13 C 1.46902 * 111.00355 * 159.71945 * 12 11 10 14 14 C 1.50706 * 109.46577 * 52.60488 * 13 12 11 15 15 O 1.21274 * 120.00042 * 359.72339 * 14 13 12 16 16 N 1.34777 * 119.99766 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99854 * 0.02562 * 16 14 13 18 18 C 1.53000 * 109.47304 * 89.99731 * 17 16 14 19 19 C 1.46496 * 120.00266 * 179.97438 * 16 14 13 20 20 C 1.50703 * 109.47077 * 90.00076 * 19 16 14 21 21 H 1.08005 * 119.99703 * 0.02562 * 20 19 16 22 22 C 1.37872 * 120.00292 * 180.02562 * 20 19 16 23 23 N 1.31518 * 119.99761 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47206 * 59.99702 * 24 22 20 26 26 H 1.48496 * 109.47019 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46839 * 299.99831 * 24 22 20 28 28 C 1.47901 * 105.82179 * 39.20847 * 12 11 10 29 29 H 1.09002 * 109.47036 * 60.00297 * 1 2 3 30 30 H 1.09001 * 109.47569 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47725 * 300.00293 * 1 2 3 32 32 H 1.08993 * 109.47113 * 239.99852 * 2 1 3 33 33 H 1.09002 * 109.47036 * 119.99703 * 2 1 3 34 34 H 0.96999 * 119.99966 * 0.02562 * 5 3 2 35 35 H 1.08996 * 109.47440 * 59.99651 * 6 5 3 36 36 H 1.09002 * 109.47043 * 299.99918 * 6 5 3 37 37 H 1.09000 * 109.47725 * 59.99811 * 7 6 5 38 38 H 1.09002 * 109.47036 * 299.99807 * 7 6 5 39 39 H 1.09005 * 110.72455 * 259.23239 * 10 8 7 40 40 H 1.09000 * 110.72420 * 22.33714 * 10 8 7 41 41 H 1.08999 * 110.66258 * 204.14667 * 11 10 8 42 42 H 1.08998 * 110.66589 * 81.02369 * 11 10 8 43 43 H 1.09000 * 109.47263 * 292.60688 * 13 12 11 44 44 H 1.09001 * 109.47582 * 172.59968 * 13 12 11 45 45 H 1.09001 * 109.47076 * 209.99400 * 17 16 14 46 46 H 1.08996 * 109.47068 * 329.99428 * 17 16 14 47 47 H 1.08994 * 109.47070 * 299.99586 * 18 17 16 48 48 H 1.08996 * 109.47306 * 59.99842 * 18 17 16 49 49 H 1.09007 * 109.46888 * 179.97438 * 18 17 16 50 50 H 1.08997 * 109.47682 * 210.00272 * 19 16 14 51 51 H 1.09004 * 109.47271 * 330.00368 * 19 16 14 52 52 H 0.96999 * 119.99754 * 180.02562 * 23 22 20 53 53 H 1.08994 * 109.92305 * 94.02253 * 28 12 11 54 54 H 1.09002 * 109.92207 * 215.31879 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3756 3.0483 0.0001 8 6 5.8857 4.4908 0.0001 9 1 5.4303 5.0539 -0.8146 10 6 5.5809 5.1677 1.3562 11 6 6.8547 6.0102 1.6170 12 7 7.9465 5.1425 1.1061 13 6 9.1545 5.9286 0.8217 14 6 9.5197 6.7447 2.0349 15 8 8.8378 6.6819 3.0358 16 7 10.6013 7.5483 2.0057 17 6 11.4216 7.6288 0.7945 18 6 10.8881 8.7417 -0.1098 19 6 10.9561 8.3422 3.1847 20 6 11.8844 7.5461 4.0655 21 1 12.1807 6.5488 3.7758 22 6 12.3553 8.0910 5.2412 23 7 11.9948 9.3057 5.5938 24 14 13.5064 7.1045 6.3327 25 1 14.7382 6.7664 5.5753 26 1 13.8660 7.9091 7.5278 27 1 12.8306 5.8540 6.7623 28 6 7.4203 4.5152 -0.1256 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9877 0.9299 0.0005 35 1 3.4819 3.5627 0.8894 36 1 3.4828 3.5616 -0.8905 37 1 5.7392 2.5341 -0.8896 38 1 5.7389 2.5349 0.8904 39 1 4.7032 5.8095 1.2783 40 1 5.4425 4.4206 2.1377 41 1 6.9798 6.1983 2.6833 42 1 6.8165 6.9474 1.0618 43 1 8.9650 6.5942 -0.0204 44 1 9.9762 5.2560 0.5756 45 1 12.4538 7.8469 1.0686 46 1 11.3798 6.6778 0.2636 47 1 9.8560 8.5236 -0.3839 48 1 10.9298 9.6927 0.4211 49 1 11.4987 8.8018 -1.0108 50 1 11.4527 9.2597 2.8691 51 1 10.0522 8.5911 3.7407 52 1 12.3265 9.6891 6.4207 53 1 7.7123 5.1031 -0.9957 54 1 7.8016 3.4981 -0.2165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001404452403.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:08 Heat of formation + Delta-G solvation = -104.876110 kcal Electronic energy + Delta-G solvation = -29618.561304 eV Core-core repulsion = 25588.769938 eV Total energy + Delta-G solvation = -4029.791366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17352 -40.70251 -39.53928 -37.01424 -36.44141 -34.94963 -34.18654 -33.53375 -31.64405 -31.15503 -29.65815 -28.91254 -27.13521 -25.31568 -24.68796 -23.95603 -23.37530 -22.18027 -21.52968 -20.69101 -19.91036 -18.60977 -18.11083 -17.86741 -17.48233 -16.94098 -16.85353 -16.63034 -16.51560 -16.02591 -15.81059 -15.39659 -15.00805 -14.89570 -14.69589 -14.45674 -14.27773 -14.21039 -13.84589 -13.69152 -13.34796 -13.29060 -13.23102 -13.13147 -12.98838 -12.85470 -12.65613 -12.63639 -12.51717 -12.41140 -12.31898 -12.12649 -12.01613 -11.86276 -11.78306 -11.72318 -11.62465 -11.45348 -10.85218 -10.64348 -10.34414 -10.06745 -9.46022 -9.27431 -8.22203 -6.37217 1.35774 1.40435 1.47613 1.67659 1.85942 2.23962 2.29382 2.42150 3.06930 3.11778 3.56831 3.65221 3.83201 3.85122 3.91277 4.10897 4.18225 4.20787 4.26655 4.30421 4.30833 4.36539 4.43542 4.45487 4.58803 4.64639 4.65043 4.73272 4.77140 4.82036 4.92685 4.96593 4.98044 4.99984 5.04138 5.05454 5.07347 5.11005 5.21350 5.22347 5.30067 5.33545 5.36600 5.39960 5.51351 5.59026 5.85767 5.92931 6.07037 6.07900 6.60128 6.70823 6.83314 7.29271 7.30943 7.54167 8.84368 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.001833 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.038513 B =15271.529926 C =16146.340591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.138 4.138 3 C 0.499 3.501 4 O -0.596 6.596 5 N -0.721 5.721 6 C 0.119 3.881 7 C -0.106 4.106 8 C -0.087 4.087 9 H 0.090 0.910 10 C -0.116 4.116 11 C 0.035 3.965 12 N -0.520 5.520 13 C 0.043 3.957 14 C 0.493 3.507 15 O -0.580 6.580 16 N -0.605 5.605 17 C 0.099 3.901 18 C -0.160 4.160 19 C 0.265 3.735 20 C -0.543 4.543 21 H 0.053 0.947 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.259 1.259 26 H -0.279 1.279 27 H -0.278 1.278 28 C 0.041 3.959 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.418 0.582 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.056 0.944 48 H 0.036 0.964 49 H 0.097 0.903 50 H 0.020 0.980 51 H -0.006 1.006 52 H 0.266 0.734 53 H 0.061 0.939 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.830 -18.414 -20.403 30.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.288 3.712 4 O -0.477 6.477 5 N -0.373 5.373 6 C -0.005 4.005 7 C -0.143 4.143 8 C -0.106 4.106 9 H 0.108 0.892 10 C -0.154 4.154 11 C -0.093 4.093 12 N -0.245 5.245 13 C -0.088 4.088 14 C 0.282 3.718 15 O -0.460 6.460 16 N -0.337 5.337 17 C -0.023 4.023 18 C -0.218 4.218 19 C 0.144 3.856 20 C -0.582 4.582 21 H 0.071 0.929 22 C -0.192 4.192 23 N -0.568 5.568 24 Si 0.792 3.208 25 H -0.183 1.183 26 H -0.204 1.204 27 H -0.204 1.204 28 C -0.086 4.086 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.255 0.745 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.102 0.898 44 H 0.139 0.861 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.115 0.885 50 H 0.038 0.962 51 H 0.012 0.988 52 H 0.075 0.925 53 H 0.080 0.920 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.513 -18.025 -19.383 29.719 hybrid contribution 0.689 0.819 0.748 1.306 sum -12.824 -17.206 -18.635 28.421 Atomic orbital electron populations 1.21545 0.93996 1.02531 1.01661 1.21694 0.97833 0.91474 1.06708 1.21575 0.82169 0.92984 0.74519 1.90694 1.56696 1.48534 1.51751 1.46008 1.07152 1.09411 1.74744 1.21305 0.94878 0.83070 1.01219 1.21740 0.92388 0.96089 1.04112 1.21908 0.94809 0.96566 0.97334 0.89207 1.22600 0.96220 0.98878 0.97732 1.23280 0.90761 0.94062 1.01196 1.64606 1.03437 1.28955 1.27542 1.22250 0.96164 0.96605 0.93794 1.21214 0.80384 0.80086 0.90146 1.90593 1.52426 1.66592 1.36379 1.48288 1.26905 1.43313 1.15168 1.21747 0.95139 1.00871 0.84531 1.22146 1.01826 0.97945 0.99875 1.18639 0.93804 0.90263 0.82915 1.21698 1.28462 1.01439 1.06563 0.92862 1.25869 0.98315 0.96108 0.98906 1.70052 1.45888 1.16310 1.24587 0.85470 0.79094 0.78207 0.78056 1.18340 1.20376 1.20411 1.23096 0.94087 1.01113 0.90336 0.93596 0.89673 0.93961 0.86130 0.86613 0.74528 0.93378 0.92291 0.88673 0.90787 0.90760 0.91398 0.91348 0.95187 0.89765 0.86116 0.90995 0.88053 0.92456 0.94469 0.88480 0.96244 0.98828 0.92473 0.92022 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.96 16 2 C -0.14 -1.16 6.42 29.85 0.19 -0.96 16 3 C 0.50 8.47 7.83 87.66 0.69 9.16 16 4 O -0.60 -16.43 15.98 -3.02 -0.05 -16.48 16 5 N -0.72 -8.77 5.56 -463.07 -2.57 -11.35 16 6 C 0.12 1.79 5.54 86.38 0.48 2.27 16 7 C -0.11 -1.21 4.48 30.59 0.14 -1.07 16 8 C -0.09 -1.36 3.00 -9.91 -0.03 -1.39 16 9 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 10 C -0.12 -2.63 5.87 31.80 0.19 -2.44 16 11 C 0.03 1.07 5.30 86.65 0.46 1.53 16 12 N -0.52 -14.54 5.26 -887.59 -4.67 -19.21 16 13 C 0.04 1.20 4.07 85.56 0.35 1.55 16 14 C 0.49 20.63 7.39 87.66 0.65 21.28 16 15 O -0.58 -30.28 13.09 -3.01 -0.04 -30.32 16 16 N -0.60 -25.72 2.46 -826.15 -2.03 -27.75 16 17 C 0.10 2.97 5.93 86.38 0.51 3.49 16 18 C -0.16 -3.88 10.24 71.98 0.74 -3.14 16 19 C 0.27 14.57 5.16 85.63 0.44 15.01 16 20 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 21 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 22 C 0.01 0.40 5.46 84.65 0.46 0.87 16 23 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 24 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 28 C 0.04 0.71 6.36 86.45 0.55 1.26 16 29 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.42 2.18 8.47 -92.71 -0.79 1.40 16 35 H 0.05 0.95 7.58 -2.39 -0.02 0.93 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.94 7.99 -2.39 -0.02 0.92 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.07 1.63 7.76 -2.39 -0.02 1.61 16 41 H 0.07 2.79 5.97 -2.39 -0.01 2.78 16 42 H 0.03 0.92 8.02 -2.39 -0.02 0.90 16 43 H 0.08 1.91 6.86 -2.39 -0.02 1.89 16 44 H 0.12 2.85 7.40 -2.39 -0.02 2.83 16 45 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 46 H 0.10 2.27 6.44 -2.39 -0.02 2.25 16 47 H 0.06 1.29 7.22 -2.39 -0.02 1.27 16 48 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 50 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 51 H -0.01 -0.41 7.42 -2.38 -0.02 -0.43 16 52 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 53 H 0.06 0.89 7.57 -2.39 -0.02 0.87 16 54 H 0.10 1.40 7.68 -2.39 -0.02 1.38 16 Total: -1.00 -84.92 426.24 -0.26 -85.18 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.08 Total: 14.29 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.71 Total: 14.84 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -8.99 Total: -115.08 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -0.09 Total: -46.80 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -84.92 -0.26 -85.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001404452403.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.700 kcal (2) G-P(sol) polarization free energy of solvation -84.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds