Wall clock time and date at job start Sat Apr 11 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.47192 * 2 1 4 4 O 1.21274 * 119.99929 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99866 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.62936 * 359.97438 * 5 3 2 7 7 C 1.53189 * 108.77461 * 126.41660 * 6 5 3 8 8 C 1.53046 * 109.33895 * 54.61555 * 7 6 5 9 9 H 1.08997 * 109.43182 * 58.68783 * 8 7 6 10 10 N 1.46905 * 109.48591 * 178.64543 * 8 7 6 11 11 C 1.46894 * 111.00216 * 275.08762 * 10 8 7 12 12 C 1.50700 * 109.47318 * 179.97438 * 11 10 8 13 13 O 1.21275 * 119.99611 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99877 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00057 * 0.02562 * 14 12 11 16 16 C 1.52998 * 109.47121 * 89.99677 * 15 14 12 17 17 C 1.46494 * 119.99809 * 179.97438 * 14 12 11 18 18 C 1.50701 * 109.47200 * 90.00554 * 17 14 12 19 19 H 1.08005 * 119.99658 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00332 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99610 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47252 * 59.99753 * 22 20 18 24 24 H 1.48503 * 109.47319 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47402 * 299.99550 * 22 20 18 26 26 C 1.53041 * 109.54076 * 298.68413 * 8 7 6 27 27 H 1.09002 * 109.49287 * 301.34773 * 26 8 7 28 28 C 1.52997 * 109.49790 * 181.28579 * 26 8 7 29 29 C 1.46927 * 120.62834 * 180.02562 * 5 3 2 30 30 H 1.08994 * 109.47048 * 299.99989 * 1 2 3 31 31 H 1.09000 * 109.46597 * 60.00438 * 1 2 3 32 32 H 1.08996 * 109.46979 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47230 * 239.99710 * 2 1 3 34 34 H 1.08999 * 109.47297 * 119.99823 * 2 1 3 35 35 H 1.09002 * 109.57977 * 246.20181 * 6 5 3 36 36 H 1.08993 * 109.59036 * 6.48236 * 6 5 3 37 37 H 1.09000 * 109.49772 * 174.57938 * 7 6 5 38 38 H 1.09002 * 109.49978 * 294.65387 * 7 6 5 39 39 H 1.00897 * 110.99884 * 151.12712 * 10 8 7 40 40 H 1.09006 * 109.47035 * 300.00412 * 11 10 8 41 41 H 1.09003 * 109.47173 * 59.99428 * 11 10 8 42 42 H 1.09001 * 109.46504 * 209.99456 * 15 14 12 43 43 H 1.08998 * 109.47272 * 329.99193 * 15 14 12 44 44 H 1.08993 * 109.47397 * 60.00115 * 16 15 14 45 45 H 1.09008 * 109.47028 * 179.97438 * 16 15 14 46 46 H 1.09001 * 109.47252 * 299.99322 * 16 15 14 47 47 H 1.09000 * 109.47489 * 210.00454 * 17 14 12 48 48 H 1.09009 * 109.47375 * 330.00481 * 17 14 12 49 49 H 0.97002 * 119.99636 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.47153 * 300.06266 * 28 26 8 51 51 H 1.09001 * 109.46832 * 180.02562 * 28 26 8 52 52 H 1.09004 * 109.47261 * 60.06438 * 28 26 8 53 53 H 1.08998 * 109.58697 * 113.79911 * 29 5 3 54 54 H 1.09002 * 109.58716 * 353.36663 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.3244 0.5608 -0.0005 7 6 5.2968 0.7559 -1.1681 8 6 5.9313 2.1454 -1.0725 9 1 6.4513 2.2417 -0.1195 10 7 6.8886 2.3237 -2.1724 11 6 8.2022 1.7670 -1.8225 12 6 9.1553 1.9674 -2.9724 13 8 8.7776 2.5201 -3.9837 14 7 10.4277 1.5334 -2.8766 15 6 10.8840 0.8663 -1.6547 16 6 10.6494 -0.6405 -1.7783 17 6 11.3540 1.7278 -3.9947 18 6 12.0595 3.0503 -3.8385 19 1 11.8395 3.6829 -2.9912 20 6 12.9851 3.4531 -4.7777 21 7 13.2526 2.6829 -5.8096 22 14 13.8590 5.0927 -4.5843 23 1 14.6164 5.1023 -3.3070 24 1 14.7981 5.2898 -5.7176 25 1 12.8577 6.1892 -4.5743 26 6 4.8400 3.2141 -1.1681 27 1 4.3036 3.1030 -2.1105 28 6 5.4785 4.6030 -1.1046 29 6 3.8625 3.0468 0.0000 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.8772 0.5588 0.9390 36 1 3.7967 -0.3858 -0.1160 37 1 6.0769 -0.0041 -1.1228 38 1 4.7563 0.6669 -2.1105 39 1 6.9652 3.2959 -2.4311 40 1 8.5877 2.2739 -0.9378 41 1 8.1018 0.7014 -1.6156 42 1 11.9475 1.0579 -1.5118 43 1 10.3273 1.2519 -0.8007 44 1 11.2061 -1.0261 -2.6323 45 1 10.9894 -1.1369 -0.8693 46 1 9.5859 -0.8321 -1.9213 47 1 12.0888 0.9227 -4.0020 48 1 10.7983 1.7210 -4.9325 49 1 13.9041 2.9662 -6.4702 50 1 6.0147 4.7137 -0.1621 51 1 4.7008 5.3638 -1.1723 52 1 6.1748 4.7211 -1.9349 53 1 4.3777 3.2470 0.9395 54 1 3.0301 3.7406 -0.1178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001405981174.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:22 Heat of formation + Delta-G solvation = -102.348750 kcal Electronic energy + Delta-G solvation = -30622.860048 eV Core-core repulsion = 26593.178276 eV Total energy + Delta-G solvation = -4029.681771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40551 -40.68340 -39.22233 -36.96419 -36.19550 -34.92405 -34.37747 -33.29645 -32.13316 -31.53220 -29.54469 -28.13093 -27.58643 -25.61023 -24.68467 -24.14429 -23.75643 -22.95155 -21.18828 -20.01623 -19.72497 -18.61888 -18.30819 -17.81381 -17.39911 -17.05059 -16.81656 -16.63618 -16.36431 -15.86094 -15.48118 -15.18387 -14.94026 -14.86187 -14.62698 -14.52468 -14.20033 -14.06587 -13.83734 -13.66745 -13.56280 -13.38812 -13.31238 -13.18381 -13.04371 -12.93005 -12.81686 -12.64035 -12.56578 -12.47423 -12.30096 -12.11377 -12.03900 -11.93802 -11.87471 -11.78303 -11.71669 -11.29422 -10.77631 -10.64215 -10.52161 -9.66447 -9.41021 -9.33578 -8.21878 -6.36849 1.35619 1.39959 1.47151 1.63401 1.89669 2.03359 2.26989 2.42730 3.07156 3.18500 3.52205 3.70587 3.74591 3.84639 3.89869 4.12915 4.17966 4.20222 4.26994 4.28462 4.37543 4.40121 4.41200 4.48140 4.51324 4.61085 4.68040 4.70096 4.75625 4.77958 4.83309 4.88833 4.97161 4.99594 5.02765 5.06779 5.07933 5.08233 5.16012 5.23663 5.25029 5.34346 5.39815 5.43233 5.55732 5.58932 5.87279 6.05067 6.08061 6.33323 6.42429 6.71561 6.86675 7.18602 7.29461 7.55555 8.84733 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.002215 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.780285 B =12639.174617 C =13441.477920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.503 3.497 4 O -0.594 6.594 5 N -0.613 5.613 6 C 0.108 3.892 7 C -0.123 4.123 8 C 0.096 3.904 9 H 0.066 0.934 10 N -0.689 5.689 11 C 0.060 3.940 12 C 0.492 3.508 13 O -0.590 6.590 14 N -0.605 5.605 15 C 0.100 3.900 16 C -0.161 4.161 17 C 0.263 3.737 18 C -0.541 4.541 19 H 0.054 0.946 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.280 1.280 25 H -0.278 1.278 26 C -0.099 4.099 27 H 0.059 0.941 28 C -0.151 4.151 29 C 0.122 3.878 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.343 0.657 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.034 0.966 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.020 0.980 48 H -0.007 1.007 49 H 0.266 0.734 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.049 0.951 53 H 0.085 0.915 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.051 -9.455 20.134 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.294 3.706 4 O -0.475 6.475 5 N -0.345 5.345 6 C -0.014 4.014 7 C -0.161 4.161 8 C -0.013 4.013 9 H 0.083 0.917 10 N -0.324 5.324 11 C -0.071 4.071 12 C 0.281 3.719 13 O -0.470 6.470 14 N -0.337 5.337 15 C -0.023 4.023 16 C -0.219 4.219 17 C 0.142 3.858 18 C -0.579 4.579 19 H 0.072 0.928 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.792 3.208 23 H -0.183 1.183 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.119 4.119 27 H 0.077 0.923 28 C -0.209 4.209 29 C -0.001 4.001 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.165 0.835 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.053 0.947 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.038 0.962 48 H 0.011 0.989 49 H 0.075 0.925 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.068 0.932 53 H 0.103 0.897 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.710 -9.285 19.122 28.318 hybrid contribution 1.151 1.814 -0.407 2.186 sum -17.559 -7.471 18.715 26.728 Atomic orbital electron populations 1.21540 0.93745 1.02581 1.01661 1.21743 0.97961 0.91664 1.06439 1.21551 0.81594 0.93034 0.74436 1.90666 1.56091 1.48413 1.52303 1.48318 1.05878 1.07814 1.72509 1.22038 0.90420 0.89733 0.99207 1.21947 0.99015 0.96499 0.98682 1.21606 0.91755 0.95587 0.92370 0.91660 1.60221 1.07653 1.24826 1.39708 1.21858 0.88100 1.03596 0.93584 1.21359 0.82871 0.78113 0.89589 1.90643 1.77520 1.44535 1.34292 1.48285 1.10377 1.57231 1.17771 1.21753 1.01252 0.93306 0.85956 1.22154 1.02154 0.94774 1.02785 1.18650 0.87034 0.95442 0.84710 1.21679 1.22456 1.04849 1.08929 0.92822 1.25887 0.97713 1.01231 0.94574 1.70053 1.34781 1.39240 1.12774 0.85474 0.78074 0.78945 0.78351 1.18336 1.20489 1.20385 1.21536 0.96092 0.95390 0.98853 0.92274 1.21825 1.01003 0.95769 1.02303 1.21564 0.96953 0.83481 0.98123 0.93430 0.94051 0.89609 0.86928 0.85987 0.88883 0.86765 0.89012 0.92558 0.83484 0.90395 0.85883 0.91254 0.87984 0.94651 0.88507 0.91835 0.96181 0.98933 0.92471 0.91036 0.91634 0.93210 0.89690 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.20 71.98 0.66 -1.06 16 2 C -0.14 -1.41 4.77 29.85 0.14 -1.27 16 3 C 0.50 9.46 7.70 87.66 0.67 10.13 16 4 O -0.59 -16.78 15.39 -3.01 -0.05 -16.82 16 5 N -0.61 -9.35 2.97 -818.83 -2.43 -11.78 16 6 C 0.11 0.92 6.34 86.36 0.55 1.47 16 7 C -0.12 -1.66 5.59 30.67 0.17 -1.49 16 8 C 0.10 1.65 1.95 44.94 0.09 1.74 16 9 H 0.07 0.91 7.80 -2.39 -0.02 0.89 16 10 N -0.69 -17.76 5.93 -495.42 -2.94 -20.70 16 11 C 0.06 1.53 4.52 85.56 0.39 1.92 16 12 C 0.49 19.87 7.71 87.66 0.68 20.54 16 13 O -0.59 -30.71 15.78 -3.01 -0.05 -30.75 16 14 N -0.60 -24.87 2.46 -826.17 -2.03 -26.90 16 15 C 0.10 2.81 5.93 86.38 0.51 3.32 16 16 C -0.16 -3.60 10.24 71.98 0.74 -2.86 16 17 C 0.26 14.24 5.16 85.63 0.44 14.68 16 18 C -0.54 -31.13 9.39 25.60 0.24 -30.89 16 19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 20 C 0.00 0.28 5.46 84.66 0.46 0.74 16 21 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 22 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 23 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 C -0.10 -1.83 2.55 -10.70 -0.03 -1.86 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 C -0.15 -2.75 8.94 71.98 0.64 -2.10 16 29 C 0.12 2.07 5.72 86.38 0.49 2.57 16 30 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.77 7.69 -2.39 -0.02 0.75 16 34 H 0.12 0.54 7.94 -2.39 -0.02 0.52 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.11 0.43 5.93 -2.39 -0.01 0.41 16 37 H 0.09 1.02 7.42 -2.39 -0.02 1.00 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.34 10.19 5.79 -89.70 -0.52 9.67 16 40 H 0.08 1.61 7.31 -2.38 -0.02 1.59 16 41 H 0.12 2.41 6.46 -2.39 -0.02 2.39 16 42 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 43 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 47 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 48 H -0.01 -0.47 7.42 -2.38 -0.02 -0.49 16 49 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 51 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.05 1.09 6.17 -2.38 -0.01 1.08 16 53 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 54 H 0.07 1.58 7.01 -2.39 -0.02 1.56 16 Total: -1.00 -83.49 420.19 2.02 -81.47 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.35 Total: 19.28 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.85 Total: 15.59 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -7.12 Total: -115.76 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.09 Total: -47.58 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -83.49 2.02 -81.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001405981174.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.882 kcal (2) G-P(sol) polarization free energy of solvation -83.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds