Wall clock time and date at job start Sat Apr 11 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47126 * 2 1 4 4 O 1.21280 * 120.00200 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99819 * 179.97438 * 3 2 1 6 6 C 1.47422 * 125.64738 * 0.04700 * 5 3 2 7 7 C 1.55121 * 104.94309 * 203.96399 * 6 5 3 8 8 C 1.55161 * 101.48569 * 323.22286 * 7 6 5 9 9 C 1.52993 * 110.72149 * 276.82910 * 8 7 6 10 10 C 1.52999 * 110.71882 * 153.72987 * 8 7 6 11 11 N 1.46905 * 109.47181 * 63.84752 * 10 8 7 12 12 C 1.46899 * 110.99937 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.46784 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00027 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99714 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00337 * 359.97438 * 15 13 12 17 17 C 1.53000 * 109.46840 * 270.00307 * 16 15 13 18 18 C 1.46502 * 120.00005 * 179.97438 * 15 13 12 19 19 C 1.50701 * 109.47310 * 270.00108 * 18 15 13 20 20 H 1.07997 * 119.99940 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00037 * 179.97438 * 19 18 15 22 22 N 1.31516 * 119.99860 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47093 * 60.00167 * 23 21 19 25 25 H 1.48503 * 109.47145 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47483 * 300.00005 * 23 21 19 27 27 C 1.47022 * 125.64910 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.47385 * 59.99967 * 1 2 3 29 29 H 1.09001 * 109.47538 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47215 * 299.99972 * 1 2 3 31 31 H 1.08999 * 109.47188 * 240.00502 * 2 1 3 32 32 H 1.08998 * 109.47208 * 120.00325 * 2 1 3 33 33 H 1.09000 * 110.37239 * 322.92856 * 6 5 3 34 34 H 1.09007 * 110.37028 * 85.25321 * 6 5 3 35 35 H 1.08999 * 111.16788 * 205.12848 * 7 6 5 36 36 H 1.08996 * 110.93626 * 81.21587 * 7 6 5 37 37 H 1.09005 * 109.47187 * 296.15915 * 9 8 7 38 38 H 1.09002 * 109.47281 * 56.15398 * 9 8 7 39 39 H 1.08994 * 109.47319 * 176.15485 * 9 8 7 40 40 H 1.08997 * 109.47960 * 303.84406 * 10 8 7 41 41 H 1.09002 * 109.47032 * 183.84416 * 10 8 7 42 42 H 1.00895 * 110.99997 * 56.03926 * 11 10 8 43 43 H 1.08992 * 109.47324 * 59.99452 * 12 11 10 44 44 H 1.09002 * 109.46941 * 299.99218 * 12 11 10 45 45 H 1.09002 * 109.47391 * 149.99977 * 16 15 13 46 46 H 1.09001 * 109.46813 * 30.00033 * 16 15 13 47 47 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 48 48 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 49 49 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 50 50 H 1.08998 * 109.46888 * 29.99915 * 18 15 13 51 51 H 1.08994 * 109.47490 * 149.99977 * 18 15 13 52 52 H 0.97000 * 119.99433 * 179.97438 * 22 21 19 53 53 H 1.09002 * 109.88330 * 59.55950 * 27 5 3 54 54 H 1.09001 * 109.87810 * 298.39579 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4210 0.6462 0.0001 7 6 5.6578 1.3569 0.6097 8 6 5.5101 2.7876 0.0275 9 6 6.0914 2.8595 -1.3859 10 6 6.1822 3.8153 0.9401 11 7 7.6269 3.5540 0.9915 12 6 8.3068 4.5241 1.8601 13 6 9.7836 4.2253 1.8874 14 8 10.2261 3.2954 1.2467 15 7 10.6126 4.9914 2.6237 16 6 10.0783 6.1149 3.3972 17 6 10.0903 7.3789 2.5352 18 6 12.0483 4.7005 2.6507 19 6 12.3454 3.7410 3.7741 20 1 11.5451 3.3839 4.4052 21 6 13.6391 3.3191 3.9963 22 7 14.6137 3.7536 3.2275 23 14 14.0076 2.1302 5.3893 24 1 13.2505 0.8703 5.1780 25 1 15.4626 1.8344 5.4158 26 1 13.6024 2.7404 6.6810 27 6 3.9816 2.9982 0.0011 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 4.1300 -0.2051 0.6155 34 1 4.6364 0.3231 -1.0184 35 1 6.5844 0.8919 0.2733 36 1 5.6021 1.3704 1.6981 37 1 7.1634 2.6653 -1.3482 38 1 5.6088 2.1122 -2.0157 39 1 5.9163 3.8521 -1.8007 40 1 5.7633 3.7394 1.9435 41 1 6.0080 4.8176 0.5487 42 1 8.0277 3.5550 0.0656 43 1 7.9026 4.4534 2.8699 44 1 8.1474 5.5312 1.4746 45 1 10.6948 6.2727 4.2822 46 1 9.0556 5.8926 3.7018 47 1 9.4739 7.2212 1.6503 48 1 9.6932 8.2150 3.1109 49 1 11.1130 7.6013 2.2306 50 1 12.3462 4.2532 1.7025 51 1 12.6035 5.6254 2.8065 52 1 15.5238 3.4570 3.3841 53 1 3.6685 3.5541 0.8849 54 1 3.6979 3.5410 -0.9006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001407232939.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:38 Heat of formation + Delta-G solvation = -100.980759 kcal Electronic energy + Delta-G solvation = -30080.990388 eV Core-core repulsion = 26051.367937 eV Total energy + Delta-G solvation = -4029.622451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.35849 -40.67218 -39.35718 -37.05010 -36.47152 -34.89794 -34.04411 -33.24216 -31.59670 -30.59545 -29.71215 -28.18061 -27.98316 -25.90984 -24.73982 -24.21568 -23.71275 -23.49209 -20.38720 -20.04928 -19.69484 -18.61929 -18.22895 -17.76037 -17.46403 -17.25683 -16.73405 -16.48635 -16.20009 -15.86756 -15.71001 -15.31055 -15.00061 -14.73727 -14.59371 -14.41734 -14.18630 -14.09928 -13.79686 -13.58155 -13.51827 -13.34289 -13.24770 -13.15160 -13.10604 -13.01329 -12.85261 -12.64314 -12.60737 -12.51318 -12.41480 -12.14098 -12.05217 -11.87380 -11.82652 -11.71044 -11.57951 -11.48529 -10.91101 -10.62521 -10.50157 -9.67898 -9.43289 -9.29228 -8.20418 -6.35011 1.37328 1.41643 1.48813 1.60922 1.89970 1.98320 2.29071 2.43845 3.08592 3.13920 3.51010 3.61072 3.71828 3.79001 3.86542 4.13095 4.17588 4.20309 4.22356 4.24445 4.33618 4.38162 4.46470 4.48733 4.58044 4.62019 4.65047 4.68124 4.73026 4.76803 4.91115 4.95244 4.96205 5.00130 5.00280 5.02350 5.06931 5.07422 5.17902 5.23977 5.26843 5.31491 5.36829 5.39157 5.42967 5.60113 5.85860 5.98840 6.09262 6.36636 6.51308 6.73102 6.86905 7.13428 7.31080 7.55855 8.86098 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.002063 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.865406 B =13572.149409 C =14464.162563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.134 4.134 3 C 0.516 3.484 4 O -0.593 6.593 5 N -0.618 5.618 6 C 0.097 3.903 7 C -0.109 4.109 8 C -0.063 4.063 9 C -0.139 4.139 10 C 0.079 3.921 11 N -0.682 5.682 12 C 0.058 3.942 13 C 0.494 3.506 14 O -0.585 6.585 15 N -0.605 5.605 16 C 0.100 3.900 17 C -0.160 4.160 18 C 0.263 3.737 19 C -0.541 4.541 20 H 0.052 0.948 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.967 3.033 24 H -0.277 1.277 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.119 3.881 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.346 0.654 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.037 0.963 50 H -0.004 1.004 51 H 0.019 0.981 52 H 0.266 0.734 53 H 0.061 0.939 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.858 -2.298 -5.802 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.307 3.693 4 O -0.474 6.474 5 N -0.351 5.351 6 C -0.025 4.025 7 C -0.147 4.147 8 C -0.063 4.063 9 C -0.196 4.196 10 C -0.050 4.050 11 N -0.315 5.315 12 C -0.074 4.074 13 C 0.283 3.717 14 O -0.465 6.465 15 N -0.337 5.337 16 C -0.022 4.022 17 C -0.218 4.218 18 C 0.142 3.858 19 C -0.579 4.579 20 H 0.071 0.929 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.791 3.209 24 H -0.203 1.203 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.005 4.005 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.166 0.834 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.118 0.882 47 H 0.079 0.921 48 H 0.112 0.888 49 H 0.056 0.944 50 H 0.014 0.986 51 H 0.037 0.963 52 H 0.075 0.925 53 H 0.079 0.921 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.968 -2.777 -5.666 25.753 hybrid contribution 0.962 0.447 0.006 1.061 sum -24.006 -2.329 -5.661 24.774 Atomic orbital electron populations 1.21540 0.93395 1.02669 1.01828 1.21684 0.98097 0.91274 1.06299 1.21227 0.80187 0.93045 0.74847 1.90679 1.55649 1.48493 1.52574 1.48654 1.05410 1.08622 1.72448 1.22638 0.86082 0.91399 1.02340 1.22753 0.97624 0.93748 1.00588 1.21488 0.92179 0.96323 0.96355 1.21827 1.01068 1.02434 0.94275 1.21931 0.86588 0.96653 0.99819 1.60091 1.03041 1.51425 1.16986 1.21783 0.88901 0.95780 1.00901 1.21273 0.89842 0.81663 0.78947 1.90634 1.78751 1.31341 1.45731 1.48276 1.08481 1.30537 1.46417 1.21724 1.00331 0.85580 0.94601 1.22147 1.01598 0.97513 1.00572 1.18660 0.76854 0.94896 0.95412 1.21683 0.93376 1.27721 1.15142 0.92924 1.25866 0.95956 0.98167 0.99310 1.70049 1.00792 1.45751 1.40241 0.85482 0.77103 0.78914 0.79401 1.20286 1.20432 1.18531 1.21910 0.91800 0.85185 1.01573 0.93517 0.89556 0.93598 0.86739 0.86829 0.88414 0.89806 0.89494 0.90971 0.92166 0.91633 0.92032 0.90263 0.93683 0.83360 0.86896 0.90090 0.91191 0.88163 0.92148 0.88769 0.94406 0.98591 0.96255 0.92485 0.92052 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.20 71.98 0.66 -1.07 16 2 C -0.13 -1.50 5.43 29.85 0.16 -1.34 16 3 C 0.52 10.21 7.85 87.66 0.69 10.90 16 4 O -0.59 -17.08 16.31 -3.03 -0.05 -17.13 16 5 N -0.62 -10.41 3.33 -811.36 -2.70 -13.11 16 6 C 0.10 1.14 6.38 86.93 0.55 1.70 16 7 C -0.11 -1.69 5.81 32.06 0.19 -1.51 16 8 C -0.06 -0.98 0.70 -51.00 -0.04 -1.02 16 9 C -0.14 -2.11 8.08 71.98 0.58 -1.52 16 10 C 0.08 1.37 4.56 86.30 0.39 1.76 16 11 N -0.68 -16.57 5.85 -517.93 -3.03 -19.60 16 12 C 0.06 1.50 4.72 85.56 0.40 1.91 16 13 C 0.49 19.75 7.71 87.66 0.68 20.42 16 14 O -0.58 -29.50 15.78 -3.04 -0.05 -29.54 16 15 N -0.61 -24.98 2.46 -826.16 -2.03 -27.00 16 16 C 0.10 2.93 5.93 86.38 0.51 3.44 16 17 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 18 C 0.26 14.18 5.16 85.63 0.44 14.62 16 19 C -0.54 -31.20 9.39 25.60 0.24 -30.96 16 20 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 21 C 0.01 0.34 5.46 84.65 0.46 0.80 16 22 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 23 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 27 C 0.12 2.07 6.05 86.73 0.52 2.60 16 28 H 0.05 0.72 8.10 -2.38 -0.02 0.70 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.72 8.10 -2.38 -0.02 0.70 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.83 7.85 -2.39 -0.02 0.81 16 33 H 0.10 0.78 7.48 -2.39 -0.02 0.76 16 34 H 0.08 0.80 7.74 -2.38 -0.02 0.78 16 35 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 36 H 0.07 1.25 8.05 -2.39 -0.02 1.23 16 37 H 0.06 1.07 6.64 -2.38 -0.02 1.06 16 38 H 0.06 0.90 7.49 -2.39 -0.02 0.88 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.35 9.02 6.54 -89.70 -0.59 8.43 16 43 H 0.11 2.54 7.40 -2.39 -0.02 2.52 16 44 H 0.08 1.65 7.19 -2.39 -0.02 1.63 16 45 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 46 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16 47 H 0.06 1.29 7.22 -2.39 -0.02 1.28 16 48 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 49 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 51 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 52 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 53 H 0.06 1.17 7.82 -2.39 -0.02 1.15 16 54 H 0.06 1.17 7.84 -2.39 -0.02 1.15 16 Total: -1.00 -80.36 427.13 1.92 -78.44 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.28 Total: 19.32 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 7.19 Total: 17.67 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -7.48 Total: -115.77 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.10 Total: -46.67 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -80.36 1.92 -78.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001407232939.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.540 kcal (2) G-P(sol) polarization free energy of solvation -80.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds