Wall clock time and date at job start Sat Apr 11 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50703 * 109.46716 * 2 1 4 4 O 1.21277 * 120.00265 * 0.02562 * 3 2 1 5 5 N 1.34785 * 120.00005 * 180.02562 * 3 2 1 6 6 C 1.47021 * 125.64730 * 359.95782 * 5 3 2 7 7 C 1.54320 * 107.27339 * 178.97957 * 6 5 3 8 8 C 1.55161 * 102.93801 * 337.80572 * 7 6 5 9 9 H 1.09008 * 111.00516 * 277.38744 * 8 7 6 10 10 C 1.52997 * 111.00122 * 153.58292 * 8 7 6 11 11 N 1.46892 * 109.47900 * 64.27883 * 10 8 7 12 12 C 1.46904 * 111.00538 * 199.63708 * 11 10 8 13 13 C 1.46902 * 110.99863 * 75.68055 * 11 10 8 14 14 C 1.50705 * 109.46953 * 190.00454 * 13 11 10 15 15 O 1.21280 * 120.00347 * 359.97438 * 14 13 11 16 16 N 1.34772 * 119.99802 * 180.02562 * 14 13 11 17 17 C 1.46506 * 120.00044 * 359.97438 * 16 14 13 18 18 C 1.52997 * 109.46781 * 90.00268 * 17 16 14 19 19 C 1.46496 * 120.00260 * 180.02562 * 16 14 13 20 20 C 1.50701 * 109.47468 * 89.99585 * 19 16 14 21 21 H 1.08003 * 119.99685 * 0.02562 * 20 19 16 22 22 C 1.37878 * 120.00025 * 180.02562 * 20 19 16 23 23 N 1.31516 * 120.00388 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47106 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47424 * 119.99806 * 24 22 20 27 27 H 1.48501 * 109.47167 * 240.00291 * 24 22 20 28 28 C 1.47417 * 125.64984 * 179.97438 * 5 3 2 29 29 H 1.09003 * 109.47721 * 299.99844 * 1 2 3 30 30 H 1.09001 * 109.47561 * 59.99995 * 1 2 3 31 31 H 1.09004 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47499 * 240.00587 * 2 1 3 33 33 H 1.08995 * 109.47376 * 119.99643 * 2 1 3 34 34 H 1.09005 * 109.88268 * 59.55406 * 6 5 3 35 35 H 1.09007 * 109.88069 * 298.39807 * 6 5 3 36 36 H 1.09001 * 110.72081 * 219.44645 * 7 6 5 37 37 H 1.08996 * 110.72651 * 96.16896 * 7 6 5 38 38 H 1.08999 * 109.47339 * 184.28462 * 10 8 7 39 39 H 1.09002 * 109.46937 * 304.27410 * 10 8 7 40 40 H 1.08993 * 109.46798 * 65.04990 * 12 11 10 41 41 H 1.08995 * 109.47037 * 185.04882 * 12 11 10 42 42 H 1.09005 * 109.46513 * 305.04891 * 12 11 10 43 43 H 1.09000 * 109.47186 * 310.00226 * 13 11 10 44 44 H 1.09000 * 109.47240 * 70.00559 * 13 11 10 45 45 H 1.09001 * 109.47088 * 209.99648 * 17 16 14 46 46 H 1.08992 * 109.47192 * 330.00101 * 17 16 14 47 47 H 1.09006 * 109.46658 * 180.02562 * 18 17 16 48 48 H 1.08997 * 109.47470 * 299.99340 * 18 17 16 49 49 H 1.09000 * 109.47438 * 60.00280 * 18 17 16 50 50 H 1.08999 * 109.47767 * 210.00106 * 19 16 14 51 51 H 1.09011 * 109.47108 * 329.99728 * 19 16 14 52 52 H 0.96994 * 120.00422 * 180.02562 * 23 22 20 53 53 H 1.09001 * 110.36708 * 85.25239 * 28 5 3 54 54 H 1.09000 * 110.46266 * 322.98057 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0321 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3573 1.6673 -0.0005 6 6 4.4181 0.6493 -0.0002 7 6 5.7688 1.3951 -0.0273 8 6 5.3888 2.7810 -0.6124 9 1 5.3407 2.7457 -1.7009 10 6 6.3667 3.8606 -0.1445 11 7 7.7057 3.5720 -0.6752 12 6 8.7402 4.2759 0.0945 13 6 7.7902 3.9096 -2.1024 14 6 9.0820 3.3785 -2.6685 15 8 9.8562 2.7783 -1.9535 16 7 9.3774 3.5714 -3.9693 17 6 8.4425 4.2969 -4.8330 18 6 8.7727 5.7904 -4.8007 19 6 10.6328 3.0546 -4.5198 20 6 10.4166 1.6556 -5.0366 21 1 9.4414 1.1974 -4.9627 22 6 11.4637 0.9607 -5.6037 23 7 12.6514 1.5185 -5.6932 24 14 11.1955 -0.7732 -6.2449 25 1 9.7808 -1.1683 -6.0268 26 1 11.5040 -0.8173 -7.6968 27 1 12.0886 -1.7126 -5.5202 28 6 3.9830 3.0020 -0.0011 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.3256 0.0173 -0.8836 35 1 4.3482 0.0414 0.9019 36 1 6.4788 0.8836 -0.6773 37 1 6.1722 1.4992 0.9799 38 1 6.0343 4.8335 -0.5065 39 1 6.4022 3.8711 0.9449 40 1 8.7600 3.8903 1.1137 41 1 9.7119 4.1171 -0.3730 42 1 8.5160 5.3424 0.1136 43 1 6.9498 3.4612 -2.6323 44 1 7.7592 4.9925 -2.2221 45 1 8.5303 3.9274 -5.8547 46 1 7.4241 4.1421 -4.4769 47 1 8.0768 6.3303 -5.4430 48 1 8.6848 6.1600 -3.7791 49 1 9.7911 5.9452 -5.1569 50 1 10.9630 3.6966 -5.3364 51 1 11.3932 3.0400 -3.7389 52 1 13.3879 1.0298 -6.0925 53 1 4.0678 3.3817 1.0171 54 1 3.4063 3.6930 -0.6160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420907542.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:52 Heat of formation + Delta-G solvation = -89.468386 kcal Electronic energy + Delta-G solvation = -30612.938006 eV Core-core repulsion = 26583.814769 eV Total energy + Delta-G solvation = -4029.123237 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21623 -40.78284 -39.05907 -37.53211 -36.69569 -34.88332 -33.92712 -32.80495 -31.61906 -30.47339 -30.13238 -28.29012 -27.82543 -25.51706 -24.85382 -24.15033 -23.54263 -22.95065 -21.13592 -20.07446 -19.76283 -18.61829 -18.21103 -18.09824 -17.28728 -17.21335 -16.69424 -16.50069 -16.32980 -15.90686 -15.59948 -15.37034 -15.01818 -14.64164 -14.57466 -14.47303 -14.35644 -13.97435 -13.83700 -13.72521 -13.54733 -13.42039 -13.26644 -13.13068 -13.07812 -12.83334 -12.67217 -12.61307 -12.60618 -12.51885 -12.44044 -12.14195 -12.05559 -11.96510 -11.82645 -11.80232 -11.64927 -11.44877 -10.91880 -10.63133 -10.42240 -9.67019 -9.39694 -9.16761 -8.20154 -6.34618 1.37378 1.39703 1.51459 1.60376 1.92438 1.99422 2.27503 2.43174 2.98743 3.09364 3.50492 3.67294 3.75941 3.80965 3.90839 4.10630 4.19550 4.19914 4.24213 4.29605 4.34453 4.43058 4.43879 4.45570 4.53718 4.60416 4.61904 4.68108 4.70788 4.78467 4.81463 4.93183 4.96180 4.97114 4.99073 4.99883 5.07218 5.07484 5.18448 5.19528 5.24667 5.31087 5.35189 5.38063 5.41872 5.61367 5.88263 5.99352 6.09829 6.17616 6.50789 6.74261 6.88396 7.12966 7.32067 7.59567 8.86861 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.002639 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.605971 B =10607.845538 C =11888.972585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C 0.517 3.483 4 O -0.591 6.591 5 N -0.621 5.621 6 C 0.098 3.902 7 C -0.110 4.110 8 C -0.090 4.090 9 H 0.078 0.922 10 C 0.072 3.928 11 N -0.537 5.537 12 C 0.028 3.972 13 C 0.051 3.949 14 C 0.497 3.503 15 O -0.576 6.576 16 N -0.607 5.607 17 C 0.101 3.899 18 C -0.160 4.160 19 C 0.265 3.735 20 C -0.536 4.536 21 H 0.053 0.947 22 C 0.006 3.994 23 N -0.930 5.930 24 Si 0.967 3.033 25 H -0.265 1.265 26 H -0.271 1.271 27 H -0.282 1.282 28 C 0.113 3.887 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.058 0.942 49 H 0.037 0.963 50 H 0.018 0.982 51 H -0.005 1.005 52 H 0.266 0.734 53 H 0.075 0.925 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.765 2.651 11.204 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.308 3.692 4 O -0.473 6.473 5 N -0.355 5.355 6 C -0.024 4.024 7 C -0.148 4.148 8 C -0.110 4.110 9 H 0.097 0.903 10 C -0.056 4.056 11 N -0.262 5.262 12 C -0.119 4.119 13 C -0.080 4.080 14 C 0.286 3.714 15 O -0.455 6.455 16 N -0.339 5.339 17 C -0.022 4.022 18 C -0.218 4.218 19 C 0.143 3.857 20 C -0.575 4.575 21 H 0.071 0.929 22 C -0.193 4.193 23 N -0.570 5.570 24 Si 0.791 3.209 25 H -0.189 1.189 26 H -0.196 1.196 27 H -0.208 1.208 28 C -0.010 4.010 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.132 0.868 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.077 0.923 49 H 0.057 0.943 50 H 0.036 0.964 51 H 0.013 0.987 52 H 0.075 0.925 53 H 0.094 0.906 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.589 2.273 11.556 23.719 hybrid contribution 0.651 0.090 -0.696 0.957 sum -19.938 2.364 10.860 22.827 Atomic orbital electron populations 1.21536 0.93298 1.02654 1.01901 1.21682 0.98186 0.91438 1.06186 1.21168 0.80239 0.92977 0.74798 1.90673 1.55544 1.48417 1.52617 1.48689 1.05383 1.08875 1.72506 1.22273 0.85972 0.90960 1.03174 1.22478 0.95187 0.94794 1.02369 1.22267 0.92470 0.95844 1.00384 0.90332 1.22051 0.86356 0.96524 1.00662 1.61466 1.04437 1.59448 1.00803 1.22392 0.95238 0.95667 0.98649 1.22008 0.95050 1.00249 0.90650 1.21170 0.88876 0.79714 0.81678 1.90614 1.52394 1.43019 1.59495 1.48296 1.21560 1.54752 1.09330 1.21700 0.92980 0.92131 0.95365 1.22146 1.01973 0.95132 1.02580 1.18646 0.81750 0.93144 0.92156 1.21727 0.96243 1.00707 1.38805 0.92883 1.25862 0.94619 1.02630 0.96185 1.70060 1.01795 1.39462 1.45731 0.85376 0.78436 0.78959 0.78091 1.18930 1.19641 1.20829 1.22167 0.92551 0.85063 1.01264 0.93330 0.93586 0.89644 0.87180 0.86732 0.90390 0.89315 0.90864 0.90027 0.92714 0.88993 0.90459 0.93119 0.94493 0.86796 0.90143 0.91132 0.88417 0.88776 0.92307 0.94340 0.96401 0.98662 0.92517 0.90646 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.20 71.98 0.66 -1.22 16 2 C -0.14 -1.73 5.61 29.85 0.17 -1.56 16 3 C 0.52 10.77 7.85 87.66 0.69 11.46 16 4 O -0.59 -17.35 16.24 -3.02 -0.05 -17.40 16 5 N -0.62 -11.13 3.33 -811.85 -2.70 -13.83 16 6 C 0.10 1.34 6.49 86.73 0.56 1.91 16 7 C -0.11 -1.86 6.20 31.78 0.20 -1.66 16 8 C -0.09 -1.50 3.05 -9.41 -0.03 -1.53 16 9 H 0.08 1.43 6.87 -2.38 -0.02 1.42 16 10 C 0.07 1.20 4.45 86.30 0.38 1.58 16 11 N -0.54 -13.33 4.20 -927.06 -3.89 -17.22 16 12 C 0.03 0.72 9.16 127.69 1.17 1.89 16 13 C 0.05 1.35 3.83 85.56 0.33 1.68 16 14 C 0.50 19.87 7.32 87.66 0.64 20.51 16 15 O -0.58 -28.83 13.96 -3.03 -0.04 -28.87 16 16 N -0.61 -25.10 2.46 -826.15 -2.03 -27.12 16 17 C 0.10 2.97 5.93 86.38 0.51 3.49 16 18 C -0.16 -3.85 10.24 71.98 0.74 -3.11 16 19 C 0.26 14.21 5.16 85.63 0.44 14.65 16 20 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 21 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 22 C 0.01 0.32 5.46 84.65 0.46 0.78 16 23 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 24 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 28 C 0.11 1.94 6.37 86.85 0.55 2.49 16 29 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 30 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 38 H 0.05 0.78 8.00 -2.39 -0.02 0.76 16 39 H 0.09 1.33 7.94 -2.39 -0.02 1.31 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.74 5.79 -2.39 -0.01 1.72 16 42 H 0.04 0.77 8.13 -2.38 -0.02 0.75 16 43 H 0.11 2.59 5.93 -2.39 -0.01 2.58 16 44 H 0.08 1.74 7.16 -2.39 -0.02 1.73 16 45 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 46 H 0.10 2.19 6.44 -2.39 -0.02 2.18 16 47 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 48 H 0.06 1.30 7.22 -2.39 -0.02 1.28 16 49 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 51 H 0.00 -0.30 7.42 -2.38 -0.02 -0.31 16 52 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 53 H 0.08 1.19 8.04 -2.39 -0.02 1.17 16 54 H 0.07 1.30 8.04 -2.39 -0.02 1.29 16 Total: -1.00 -80.00 426.77 2.16 -77.84 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.85 Total: 15.10 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 7.72 Total: 20.87 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -8.34 Total: -114.31 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.09 Total: -46.28 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -80.00 2.16 -77.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420907542.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.627 kcal (2) G-P(sol) polarization free energy of solvation -80.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds