Wall clock time and date at job start Sat Apr 11 2020 05:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.48140 * 127.83741 * 359.68437 * 5 3 2 7 7 C 1.54799 * 104.41587 * 140.36493 * 6 5 3 8 8 H 1.08998 * 110.20070 * 142.94062 * 7 6 5 9 9 N 1.46896 * 110.61499 * 265.17973 * 7 6 5 10 10 C 1.46906 * 111.00077 * 270.64896 * 9 7 6 11 11 C 1.50698 * 109.47300 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00000 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99880 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00180 * 359.97438 * 13 11 10 15 15 C 1.53005 * 109.47021 * 90.00329 * 14 13 11 16 16 C 1.46503 * 119.99855 * 179.97438 * 13 11 10 17 17 C 1.50700 * 109.47275 * 89.99821 * 16 13 11 18 18 H 1.08002 * 119.99727 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00176 * 180.02562 * 17 16 13 20 20 N 1.31512 * 120.00054 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47131 * 89.99725 * 21 19 17 23 23 H 1.48500 * 109.46831 * 210.00162 * 21 19 17 24 24 H 1.48505 * 109.47000 * 329.99619 * 21 19 17 25 25 C 1.54284 * 104.91656 * 24.16520 * 7 6 5 26 26 C 1.53005 * 110.34059 * 240.93367 * 25 7 6 27 27 C 1.53003 * 110.34311 * 118.68070 * 25 7 6 28 28 C 1.48145 * 127.83524 * 180.02562 * 5 3 2 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 32 32 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 34 34 H 1.08996 * 110.40666 * 259.19123 * 6 5 3 35 35 H 1.08997 * 110.41094 * 21.62946 * 6 5 3 36 36 H 1.00900 * 111.00111 * 34.60077 * 9 7 6 37 37 H 1.09005 * 109.46928 * 299.99902 * 10 9 7 38 38 H 1.09004 * 109.46926 * 59.99588 * 10 9 7 39 39 H 1.09002 * 109.47111 * 210.00325 * 14 13 11 40 40 H 1.08997 * 109.47301 * 330.00546 * 14 13 11 41 41 H 1.09002 * 109.47175 * 299.99957 * 15 14 13 42 42 H 1.08997 * 109.46906 * 59.99975 * 15 14 13 43 43 H 1.08996 * 109.47031 * 179.97438 * 15 14 13 44 44 H 1.09004 * 109.47115 * 209.99459 * 16 13 11 45 45 H 1.09002 * 109.46981 * 329.99591 * 16 13 11 46 46 H 0.97000 * 120.00340 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.47003 * 176.99345 * 26 25 7 48 48 H 1.08994 * 109.47400 * 296.99508 * 26 25 7 49 49 H 1.09004 * 109.46830 * 56.99718 * 26 25 7 50 50 H 1.08993 * 109.46657 * 303.00681 * 27 25 7 51 51 H 1.08998 * 109.47140 * 63.00688 * 27 25 7 52 52 H 1.09000 * 109.47137 * 183.00713 * 27 25 7 53 53 H 1.09000 * 110.41001 * 338.37202 * 28 5 3 54 54 H 1.09004 * 110.40419 * 100.80260 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4646 0.6828 0.0076 7 6 5.5211 1.2843 -0.9506 8 1 6.5253 1.0856 -0.5762 9 7 5.3639 0.7355 -2.3041 10 6 6.1590 -0.4883 -2.4716 11 6 5.9733 -1.0207 -3.8691 12 8 5.2494 -0.4383 -4.6487 13 7 6.6108 -2.1446 -4.2523 14 6 7.4847 -2.8484 -3.3105 15 6 6.6684 -3.8826 -2.5326 16 6 6.4298 -2.6625 -5.6108 17 6 7.4713 -2.0629 -6.5199 18 1 8.1954 -1.3654 -6.1254 19 6 7.4992 -2.4038 -7.8556 20 7 6.6166 -3.2520 -8.3363 21 14 8.7899 -1.6600 -8.9827 22 1 9.9967 -2.5251 -8.9921 23 1 8.2441 -1.5567 -10.3599 24 1 9.1548 -0.3066 -8.4921 25 6 5.2392 2.8012 -0.9508 26 6 4.8785 3.2749 -2.3603 27 6 6.4544 3.5682 -0.4255 28 6 4.0371 2.9834 0.0011 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.8745 0.5791 1.0122 35 1 4.1183 -0.2816 -0.3641 36 1 4.3917 0.5668 -2.5152 37 1 7.2125 -0.2626 -2.3063 38 1 5.8303 -1.2368 -1.7506 39 1 8.2802 -3.3520 -3.8598 40 1 7.9210 -2.1318 -2.6147 41 1 5.8729 -3.3790 -1.9833 42 1 6.2321 -4.5991 -3.2284 43 1 7.3187 -4.4065 -1.8322 44 1 6.5354 -3.7474 -5.6031 45 1 5.4361 -2.3967 -5.9715 46 1 6.6364 -3.4922 -9.2759 47 1 4.6305 4.3361 -2.3346 48 1 5.7274 3.1162 -3.0253 49 1 4.0206 2.7100 -2.7250 50 1 6.7065 3.2097 0.5725 51 1 7.3010 3.4091 -1.0933 52 1 6.2213 4.6320 -0.3813 53 1 3.3679 3.7569 -0.3754 54 1 4.3813 3.2329 1.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423425899.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:55 Heat of formation + Delta-G solvation = -93.145075 kcal Electronic energy + Delta-G solvation = -31316.302325 eV Core-core repulsion = 27287.019655 eV Total energy + Delta-G solvation = -4029.282670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50128 -40.58800 -39.41718 -36.92125 -35.60320 -34.86347 -34.68562 -33.52955 -31.58869 -30.29972 -29.06891 -28.20688 -27.87871 -26.62239 -24.77424 -24.53404 -23.89026 -23.12816 -20.48098 -20.03068 -19.59812 -18.60196 -18.16095 -17.82077 -17.57919 -17.08004 -16.61086 -16.39470 -16.08907 -15.86790 -15.65567 -15.20504 -14.84087 -14.70783 -14.55995 -14.30626 -14.22522 -14.05455 -13.69911 -13.58846 -13.39089 -13.28801 -13.25962 -13.13301 -13.01788 -12.97724 -12.68703 -12.65855 -12.58324 -12.50788 -12.44929 -12.14628 -12.11222 -11.84519 -11.78890 -11.69279 -11.64878 -11.52642 -10.91271 -10.63239 -10.48465 -9.90121 -9.38811 -9.16208 -8.21239 -6.35774 1.35877 1.39386 1.49387 1.57948 1.92887 1.96134 2.30017 2.43808 3.08104 3.19787 3.37126 3.58894 3.78068 3.81797 4.04062 4.09707 4.14823 4.17970 4.18599 4.30693 4.35861 4.42240 4.50432 4.57144 4.59572 4.64342 4.70611 4.73188 4.76800 4.80806 4.91710 4.93572 4.98487 4.99724 5.04491 5.04972 5.10005 5.15808 5.19840 5.25204 5.29713 5.30847 5.44291 5.47820 5.55815 5.60664 5.89246 6.08812 6.10174 6.29150 6.52754 6.73400 6.90327 7.11153 7.31152 7.59620 8.85367 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.002833 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.480887 B = 9879.972162 C =10516.535353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.522 3.478 4 O -0.592 6.592 5 N -0.623 5.623 6 C 0.071 3.929 7 C 0.084 3.916 8 H 0.126 0.874 9 N -0.675 5.675 10 C 0.058 3.942 11 C 0.491 3.509 12 O -0.590 6.590 13 N -0.605 5.605 14 C 0.099 3.901 15 C -0.160 4.160 16 C 0.265 3.735 17 C -0.540 4.540 18 H 0.053 0.947 19 C 0.006 3.994 20 N -0.929 5.929 21 Si 0.966 3.034 22 H -0.262 1.262 23 H -0.283 1.283 24 H -0.273 1.273 25 C -0.063 4.063 26 C -0.109 4.109 27 C -0.130 4.130 28 C 0.110 3.890 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.340 0.660 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.095 0.905 44 H 0.019 0.981 45 H -0.008 1.008 46 H 0.266 0.734 47 H 0.043 0.957 48 H 0.052 0.948 49 H 0.027 0.973 50 H 0.080 0.920 51 H 0.060 0.940 52 H 0.059 0.941 53 H 0.056 0.944 54 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 4.577 25.934 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.175 4.175 3 C 0.313 3.687 4 O -0.474 6.474 5 N -0.356 5.356 6 C -0.053 4.053 7 C -0.027 4.027 8 H 0.144 0.856 9 N -0.306 5.306 10 C -0.073 4.073 11 C 0.280 3.720 12 O -0.471 6.471 13 N -0.337 5.337 14 C -0.023 4.023 15 C -0.218 4.218 16 C 0.143 3.857 17 C -0.578 4.578 18 H 0.071 0.929 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.790 3.210 22 H -0.187 1.187 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.065 4.065 26 C -0.167 4.167 27 C -0.187 4.187 28 C -0.013 4.013 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.159 0.841 37 H 0.138 0.862 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.114 0.886 44 H 0.037 0.963 45 H 0.010 0.990 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.098 0.902 51 H 0.079 0.921 52 H 0.078 0.922 53 H 0.075 0.925 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.377 5.614 25.082 25.706 hybrid contribution -0.428 -0.323 -1.168 1.285 sum -0.051 5.292 23.914 24.492 Atomic orbital electron populations 1.21528 0.93416 1.02619 1.01844 1.21662 0.98222 0.91728 1.05879 1.21061 0.80295 0.92681 0.74639 1.90676 1.55550 1.48434 1.52691 1.49066 1.04711 1.09604 1.72222 1.23530 0.86819 0.92539 1.02426 1.22865 1.00252 0.93500 0.86083 0.85649 1.60222 1.14745 1.29301 1.26328 1.21901 1.01477 0.92536 0.91423 1.21418 0.79597 0.80005 0.90982 1.90661 1.40977 1.58806 1.56624 1.48278 1.46052 1.25641 1.13703 1.21752 0.92784 0.96039 0.91701 1.22150 1.01008 0.98698 0.99929 1.18618 0.95053 0.93150 0.78887 1.21731 1.15106 1.26365 0.94640 0.92915 1.25852 0.98272 0.95505 0.99624 1.70050 1.36860 1.34977 1.15055 0.85443 0.79080 0.78839 0.77618 1.18686 1.20872 1.19827 1.21513 0.95263 0.94971 0.94751 1.21425 1.00729 0.98544 0.96012 1.21790 0.95488 0.99790 1.01674 1.22576 0.92986 0.85576 1.00159 0.89730 0.92808 0.94171 0.88233 0.86088 0.86998 0.89374 0.84092 0.86185 0.89129 0.91493 0.87676 0.91697 0.94811 0.88621 0.96273 0.98960 0.92516 0.93774 0.92854 0.95422 0.90155 0.92137 0.92222 0.92505 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.20 71.98 0.66 -1.78 16 2 C -0.14 -2.19 5.39 29.85 0.16 -2.03 16 3 C 0.52 12.23 7.91 87.66 0.69 12.93 16 4 O -0.59 -19.37 16.25 -3.03 -0.05 -19.42 16 5 N -0.62 -11.43 3.31 -807.11 -2.67 -14.11 16 6 C 0.07 0.79 6.40 86.68 0.55 1.34 16 7 C 0.08 1.19 3.01 45.97 0.14 1.33 16 8 H 0.13 1.15 7.39 -2.39 -0.02 1.13 16 9 N -0.67 -15.64 4.16 -490.15 -2.04 -17.68 16 10 C 0.06 1.31 4.58 85.56 0.39 1.70 16 11 C 0.49 18.95 7.71 87.66 0.68 19.63 16 12 O -0.59 -30.00 15.78 -3.05 -0.05 -30.05 16 13 N -0.60 -24.06 2.46 -826.15 -2.03 -26.09 16 14 C 0.10 2.67 5.93 86.38 0.51 3.18 16 15 C -0.16 -3.32 10.24 71.98 0.74 -2.58 16 16 C 0.26 14.12 5.16 85.63 0.44 14.56 16 17 C -0.54 -31.10 9.39 25.60 0.24 -30.86 16 18 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 21 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 25 C -0.06 -1.04 1.03 -51.26 -0.05 -1.09 16 26 C -0.11 -2.64 7.44 71.98 0.54 -2.11 16 27 C -0.13 -1.51 8.24 71.98 0.59 -0.92 16 28 C 0.11 1.94 6.14 86.54 0.53 2.47 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 32 H 0.10 1.51 7.96 -2.39 -0.02 1.49 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.89 7.20 -2.39 -0.02 0.87 16 36 H 0.34 9.38 7.69 -89.69 -0.69 8.69 16 37 H 0.12 2.20 7.33 -2.38 -0.02 2.18 16 38 H 0.09 1.37 7.18 -2.39 -0.02 1.35 16 39 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 40 H 0.11 1.96 6.44 -2.39 -0.02 1.94 16 41 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 42 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.02 1.05 8.07 -2.38 -0.02 1.03 16 45 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 46 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.05 1.47 7.96 -2.39 -0.02 1.45 16 49 H 0.03 0.80 7.40 -2.39 -0.02 0.79 16 50 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.06 1.32 7.60 -2.39 -0.02 1.30 16 54 H 0.09 1.22 7.86 -2.38 -0.02 1.20 16 Total: -1.00 -84.48 427.74 2.92 -81.55 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.17 Total: 18.30 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 7.28 Total: 16.59 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -6.46 Total: -114.23 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.10 Total: -49.47 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -84.48 2.92 -81.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423425899.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.593 kcal (2) G-P(sol) polarization free energy of solvation -84.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds