Wall clock time and date at job start Sat Apr 11 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47145 * 2 1 4 4 O 1.21279 * 119.99991 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99885 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99757 * 359.97438 * 5 3 2 7 7 C 1.53010 * 109.46878 * 270.00249 * 6 5 3 8 8 C 1.46499 * 120.00036 * 180.02562 * 5 3 2 9 9 H 1.08996 * 110.64239 * 178.30139 * 8 5 3 10 10 C 1.54599 * 110.71995 * 301.44561 * 8 5 3 11 11 C 1.53998 * 105.13665 * 140.31498 * 10 8 5 12 12 N 1.47902 * 107.05933 * 1.22566 * 11 10 8 13 13 C 1.46900 * 111.00006 * 214.15187 * 12 11 10 14 14 C 1.50703 * 109.46876 * 176.64103 * 13 12 11 15 15 O 1.21278 * 120.00125 * 6.11412 * 14 13 12 16 16 N 1.34780 * 119.99369 * 185.84197 * 14 13 12 17 17 C 1.46495 * 120.00158 * 359.97438 * 16 14 13 18 18 C 1.53008 * 109.46771 * 90.00238 * 17 16 14 19 19 C 1.46501 * 119.99500 * 179.97438 * 16 14 13 20 20 C 1.50703 * 109.46880 * 90.00150 * 19 16 14 21 21 H 1.08001 * 120.00137 * 359.97438 * 20 19 16 22 22 C 1.37877 * 120.00176 * 180.02562 * 20 19 16 23 23 N 1.31512 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00191 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47124 * 59.99627 * 24 22 20 26 26 H 1.48504 * 109.47274 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47296 * 299.99886 * 24 22 20 28 28 C 1.48533 * 105.82009 * 334.66708 * 12 11 10 29 29 H 1.09007 * 109.47285 * 300.00740 * 1 2 3 30 30 H 1.09003 * 109.47257 * 59.99828 * 1 2 3 31 31 H 1.08993 * 109.47597 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46802 * 239.99804 * 2 1 3 33 33 H 1.09002 * 109.46871 * 119.99796 * 2 1 3 34 34 H 1.09002 * 109.47539 * 30.00273 * 6 5 3 35 35 H 1.08998 * 109.46646 * 150.00788 * 6 5 3 36 36 H 1.09003 * 109.46613 * 180.02562 * 7 6 5 37 37 H 1.08989 * 109.47152 * 299.99964 * 7 6 5 38 38 H 1.08998 * 109.47042 * 60.00781 * 7 6 5 39 39 H 1.09004 * 110.30857 * 21.40310 * 10 8 5 40 40 H 1.08991 * 110.39265 * 259.27203 * 10 8 5 41 41 H 1.08997 * 109.91620 * 241.86926 * 11 10 8 42 42 H 1.09006 * 109.91443 * 120.57562 * 11 10 8 43 43 H 1.09000 * 109.46532 * 56.63953 * 13 12 11 44 44 H 1.08995 * 109.46948 * 296.64017 * 13 12 11 45 45 H 1.08998 * 109.46839 * 209.99739 * 17 16 14 46 46 H 1.08993 * 109.47628 * 330.00170 * 17 16 14 47 47 H 1.09004 * 109.46341 * 179.97438 * 18 17 16 48 48 H 1.08998 * 109.47031 * 299.99383 * 18 17 16 49 49 H 1.08996 * 109.47164 * 60.00122 * 18 17 16 50 50 H 1.08997 * 109.47299 * 209.99736 * 19 16 14 51 51 H 1.09000 * 109.47337 * 330.00548 * 19 16 14 52 52 H 0.97000 * 120.00308 * 179.97438 * 23 22 20 53 53 H 1.09003 * 110.66497 * 157.64027 * 28 12 11 54 54 H 1.08997 * 110.66518 * 280.77414 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.3094 0.5535 -0.0005 7 6 4.6412 0.1662 1.4421 8 6 3.8458 3.0483 0.0000 9 1 4.9352 3.0706 0.0297 10 6 3.3164 3.8161 -1.2329 11 6 2.9713 5.2238 -0.7122 12 7 3.3181 5.2517 0.7253 13 6 2.3835 6.1010 1.4759 14 6 2.7173 6.0395 2.9442 15 8 3.7074 5.4463 3.3166 16 7 1.9185 6.6485 3.8428 17 6 0.7261 7.3705 3.3922 18 6 -0.4679 6.4142 3.3614 19 6 2.2426 6.5883 5.2702 20 6 3.1210 7.7571 5.6356 21 1 3.4092 8.4730 4.8800 22 6 3.5574 7.9121 6.9342 23 7 3.2068 7.0402 7.8542 24 14 4.6455 9.3613 7.3873 25 1 3.9285 10.6287 7.0960 26 1 4.9742 9.3003 8.8342 27 1 5.8983 9.3074 6.5918 28 6 3.2445 3.8419 1.1871 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8689 -0.3012 -0.5140 35 1 5.2218 0.8556 -0.5146 36 1 5.3498 -0.6620 1.4420 37 1 5.0817 1.0208 1.9555 38 1 3.7288 -0.1359 1.9562 39 1 2.4243 3.3295 -1.6273 40 1 4.0858 3.8756 -2.0025 41 1 1.9063 5.4166 -0.8412 42 1 3.5546 5.9717 -1.2495 43 1 1.3647 5.7463 1.3196 44 1 2.4675 7.1302 1.1269 45 1 0.5170 8.1908 4.0789 46 1 0.8986 7.7687 2.3924 47 1 -1.3551 6.9516 3.0265 48 1 -0.2587 5.5940 2.6747 49 1 -0.6404 6.0161 4.3612 50 1 1.3229 6.6286 5.8537 51 1 2.7684 5.6578 5.4845 52 1 3.5142 7.1490 8.7678 53 1 3.8429 3.7002 2.0871 54 1 2.2096 3.5478 1.3616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438256378.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:18 Heat of formation + Delta-G solvation = -83.390295 kcal Electronic energy + Delta-G solvation = -31742.166973 eV Core-core repulsion = 27713.307302 eV Total energy + Delta-G solvation = -4028.859671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70058 -40.76705 -38.88064 -37.01225 -36.77390 -34.95961 -33.98890 -32.77460 -31.66898 -31.02023 -29.64067 -29.26111 -27.38025 -25.62352 -24.75128 -24.07257 -23.92038 -22.46513 -21.99736 -19.95508 -19.68634 -18.64519 -18.31313 -17.78754 -17.57697 -17.17320 -16.66118 -16.58933 -16.24698 -16.07256 -15.33903 -15.07775 -14.88519 -14.82211 -14.66938 -14.60381 -14.49365 -14.19808 -13.96424 -13.74519 -13.48588 -13.31083 -13.24820 -13.09798 -13.04896 -12.92736 -12.71578 -12.66149 -12.57127 -12.51950 -12.33357 -12.31648 -12.22054 -12.12613 -11.91896 -11.89675 -11.73757 -11.68459 -10.65654 -10.56879 -10.51160 -9.67604 -9.50194 -9.34726 -8.23321 -6.38595 1.35074 1.40070 1.47336 1.63196 1.81200 1.93955 2.21628 2.40601 3.05481 3.09523 3.52315 3.56810 3.70954 3.83340 4.00391 4.05342 4.11800 4.15929 4.19137 4.20968 4.30597 4.33712 4.37754 4.38862 4.48350 4.54824 4.57515 4.63995 4.70495 4.82578 4.85081 4.87194 4.90616 4.93332 4.96149 4.99624 4.99879 5.04447 5.08078 5.15053 5.17355 5.29608 5.32201 5.36399 5.55587 5.57199 5.79616 5.86580 5.95004 6.05210 6.44399 6.68600 6.77833 7.21482 7.27065 7.48628 8.83764 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.002934 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.063985 B = 9539.410525 C = 9825.649147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.500 3.500 4 O -0.574 6.574 5 N -0.607 5.607 6 C 0.102 3.898 7 C -0.174 4.174 8 C 0.148 3.852 9 H 0.109 0.891 10 C -0.124 4.124 11 C 0.043 3.957 12 N -0.512 5.512 13 C 0.046 3.954 14 C 0.497 3.503 15 O -0.577 6.577 16 N -0.606 5.606 17 C 0.101 3.899 18 C -0.159 4.159 19 C 0.267 3.733 20 C -0.543 4.543 21 H 0.053 0.947 22 C 0.007 3.993 23 N -0.929 5.929 24 Si 0.970 3.030 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.278 1.278 28 C 0.033 3.967 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.046 0.954 49 H 0.039 0.961 50 H 0.020 0.980 51 H -0.008 1.008 52 H 0.267 0.733 53 H 0.056 0.944 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -14.093 -22.938 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.178 4.178 3 C 0.290 3.710 4 O -0.454 6.454 5 N -0.339 5.339 6 C -0.019 4.019 7 C -0.232 4.232 8 C 0.043 3.957 9 H 0.127 0.873 10 C -0.163 4.163 11 C -0.085 4.085 12 N -0.236 5.236 13 C -0.085 4.085 14 C 0.286 3.714 15 O -0.457 6.457 16 N -0.338 5.338 17 C -0.021 4.021 18 C -0.217 4.217 19 C 0.145 3.855 20 C -0.581 4.581 21 H 0.071 0.929 22 C -0.192 4.192 23 N -0.569 5.569 24 Si 0.794 3.206 25 H -0.184 1.184 26 H -0.202 1.202 27 H -0.203 1.203 28 C -0.096 4.096 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.139 0.861 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.037 0.963 51 H 0.010 0.990 52 H 0.076 0.924 53 H 0.075 0.925 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.577 -13.738 -22.465 26.458 hybrid contribution -0.281 0.482 1.181 1.306 sum -2.858 -13.256 -21.284 25.237 Atomic orbital electron populations 1.21519 0.93688 1.02497 1.01605 1.21771 0.97963 0.91897 1.06145 1.21500 0.81666 0.93012 0.74789 1.90646 1.56173 1.47888 1.50660 1.48186 1.06295 1.06638 1.72780 1.21906 0.93535 0.89027 0.97445 1.22242 1.02147 1.01904 0.96936 1.21903 0.99047 0.80800 0.93921 0.87272 1.22630 1.02016 0.94236 0.97396 1.22892 0.99859 0.98434 0.87309 1.64530 1.47751 1.08002 1.03365 1.22165 0.95610 1.01088 0.89681 1.21055 0.82687 0.78613 0.89084 1.90593 1.28485 1.44928 1.81652 1.48287 1.25706 1.52128 1.07671 1.21715 0.84027 0.95030 1.01349 1.22135 0.98520 0.99745 1.01309 1.18648 0.94714 0.95521 0.76578 1.21672 1.31627 1.10139 0.94709 0.92871 1.25892 0.97568 0.99648 0.96095 1.70054 1.46536 1.37474 1.02845 0.85437 0.78778 0.79257 0.77150 1.18375 1.20191 1.20310 1.23429 0.99818 0.88061 0.98281 0.94552 0.93058 0.89641 0.85814 0.87683 0.87025 0.88486 0.88974 0.94713 0.93169 0.91194 0.88530 0.93584 0.88485 0.91139 0.86055 0.90422 0.88471 0.88370 0.93486 0.94156 0.96251 0.98958 0.92386 0.92525 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.20 71.98 0.66 -1.53 16 2 C -0.14 -1.94 4.97 29.85 0.15 -1.80 16 3 C 0.50 11.42 6.80 87.66 0.60 12.01 16 4 O -0.57 -17.87 12.31 -3.03 -0.04 -17.91 16 5 N -0.61 -12.23 2.54 -791.13 -2.01 -14.24 16 6 C 0.10 1.20 5.91 86.38 0.51 1.71 16 7 C -0.17 -2.55 10.24 71.99 0.74 -1.82 16 8 C 0.15 3.67 3.55 46.20 0.16 3.83 16 9 H 0.11 2.49 7.88 -2.39 -0.02 2.47 16 10 C -0.12 -2.70 6.16 31.48 0.19 -2.50 16 11 C 0.04 1.05 6.70 86.45 0.58 1.63 16 12 N -0.51 -17.09 5.11 -887.55 -4.54 -21.62 16 13 C 0.05 1.57 3.77 85.56 0.32 1.90 16 14 C 0.50 23.01 7.31 87.66 0.64 23.65 16 15 O -0.58 -32.19 13.88 -3.02 -0.04 -32.24 16 16 N -0.61 -28.03 2.46 -826.15 -2.03 -30.06 16 17 C 0.10 3.44 5.85 86.38 0.51 3.95 16 18 C -0.16 -4.67 10.18 71.98 0.73 -3.93 16 19 C 0.27 15.31 5.16 85.63 0.44 15.75 16 20 C -0.54 -32.75 9.39 25.60 0.24 -32.50 16 21 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 22 C 0.01 0.40 5.46 84.65 0.46 0.87 16 23 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 24 Si 0.97 46.35 29.54 68.60 2.03 48.38 16 25 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 28 C 0.03 1.15 4.92 86.65 0.43 1.58 16 29 H 0.04 0.77 8.10 -2.38 -0.02 0.75 16 30 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 0.92 7.40 -2.39 -0.02 0.90 16 33 H 0.11 1.24 7.19 -2.39 -0.02 1.22 16 34 H 0.11 0.63 6.44 -2.39 -0.02 0.61 16 35 H 0.10 0.87 7.96 -2.39 -0.02 0.85 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.81 7.22 -2.39 -0.02 0.79 16 39 H 0.07 1.67 6.32 -2.38 -0.02 1.66 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 42 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.07 2.26 6.72 -2.39 -0.02 2.24 16 44 H 0.12 3.56 7.70 -2.39 -0.02 3.54 16 45 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 46 H 0.10 2.64 6.60 -2.39 -0.02 2.62 16 47 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 48 H 0.05 1.41 7.12 -2.39 -0.02 1.39 16 49 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 51 H -0.01 -0.51 7.43 -2.39 -0.02 -0.53 16 52 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 53 H 0.06 2.45 6.43 -2.39 -0.02 2.44 16 54 H 0.04 1.61 5.63 -2.39 -0.01 1.59 16 Total: -1.00 -84.16 417.18 1.88 -82.28 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.86 Total: 20.41 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 7.36 Total: 22.80 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -8.29 Total: -123.72 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.08 Total: -50.14 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -84.16 1.88 -82.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438256378.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.114 kcal (2) G-P(sol) polarization free energy of solvation -84.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds