Wall clock time and date at job start Sat Apr 11 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47022 * 2 1 4 4 O 1.21280 * 119.99843 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00001 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99974 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.50406 * 325.07656 * 6 5 3 8 8 C 1.53115 * 109.50321 * 85.19810 * 6 5 3 9 9 C 1.53113 * 109.16378 * 62.28485 * 8 6 5 10 10 C 1.53037 * 109.27796 * 57.65733 * 9 8 6 11 11 N 1.46848 * 109.52190 * 300.82028 * 10 9 8 12 12 C 1.46898 * 110.99739 * 185.84241 * 11 10 9 13 13 C 1.50695 * 109.46909 * 300.37501 * 12 11 10 14 14 O 1.21277 * 120.00486 * 354.46142 * 13 12 11 15 15 N 1.34782 * 119.99740 * 174.18244 * 13 12 11 16 16 C 1.46498 * 120.00028 * 0.27854 * 15 13 12 17 17 C 1.52999 * 109.47271 * 89.99988 * 16 15 13 18 18 C 1.46498 * 120.00265 * 180.27712 * 15 13 12 19 19 C 1.50703 * 109.46897 * 89.99535 * 18 15 13 20 20 H 1.08000 * 120.00253 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99524 * 180.02562 * 19 18 15 22 22 N 1.31520 * 119.99677 * 180.02562 * 21 19 18 23 23 Si 1.86790 * 120.00219 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47141 * 90.00412 * 23 21 19 25 25 H 1.48506 * 109.47159 * 209.99845 * 23 21 19 26 26 H 1.48497 * 109.47457 * 330.00041 * 23 21 19 27 27 C 1.46848 * 111.19862 * 61.74153 * 11 10 9 28 28 H 1.09000 * 109.45977 * 58.27498 * 27 11 10 29 29 C 1.52999 * 109.46161 * 178.25398 * 27 11 10 30 30 H 1.08989 * 109.47262 * 300.00672 * 1 2 3 31 31 H 1.08998 * 109.46582 * 60.00798 * 1 2 3 32 32 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47785 * 239.99596 * 2 1 3 34 34 H 1.09004 * 109.47006 * 119.99237 * 2 1 3 35 35 H 0.96998 * 119.99832 * 359.97438 * 5 3 2 36 36 H 1.09005 * 109.52482 * 182.19209 * 8 6 5 37 37 H 1.09003 * 109.52174 * 302.37862 * 8 6 5 38 38 H 1.09005 * 109.50188 * 177.59570 * 9 8 6 39 39 H 1.09002 * 109.50422 * 297.71406 * 9 8 6 40 40 H 1.09000 * 109.45874 * 180.80515 * 10 9 8 41 41 H 1.08993 * 109.46463 * 60.83402 * 10 9 8 42 42 H 1.09005 * 109.46472 * 180.38132 * 12 11 10 43 43 H 1.08993 * 109.47413 * 60.38489 * 12 11 10 44 44 H 1.09002 * 109.47263 * 210.00159 * 16 15 13 45 45 H 1.09006 * 109.47335 * 329.99784 * 16 15 13 46 46 H 1.09002 * 109.47117 * 300.00260 * 17 16 15 47 47 H 1.09001 * 109.47327 * 60.00350 * 17 16 15 48 48 H 1.09000 * 109.47192 * 179.97438 * 17 16 15 49 49 H 1.08994 * 109.47542 * 210.00178 * 18 15 13 50 50 H 1.09000 * 109.46892 * 330.00281 * 18 15 13 51 51 H 0.96996 * 120.00200 * 180.02562 * 22 21 19 52 52 H 1.08992 * 109.47379 * 53.09655 * 29 27 11 53 53 H 1.09003 * 109.46671 * 173.09572 * 29 27 11 54 54 H 1.09001 * 109.47242 * 293.09153 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1731 3.6719 -0.5889 8 6 3.9015 3.5714 1.4379 9 6 4.8934 2.7266 2.2420 10 6 6.2663 2.7815 1.5681 11 7 6.1601 2.2701 0.1956 12 6 7.4833 2.1783 -0.4358 13 6 8.1199 3.5438 -0.4688 14 8 7.4915 4.5148 -0.1042 15 7 9.3896 3.6851 -0.8982 16 6 10.1488 2.5121 -1.3386 17 6 9.9357 2.3005 -2.8388 18 6 10.0106 5.0117 -0.9246 19 6 10.6937 5.2728 0.3931 20 1 10.6682 4.5252 1.1721 21 6 11.3513 6.4663 0.6040 22 7 11.9479 6.6940 1.7538 23 14 11.3948 7.7595 -0.7430 24 1 10.2260 8.6641 -0.5988 25 1 12.6480 8.5485 -0.6315 26 1 11.3451 7.0943 -2.0698 27 6 5.2490 3.0939 -0.6090 28 1 5.6061 4.1237 -0.6218 29 6 5.2015 2.5530 -2.0394 30 1 -0.3633 0.5139 0.8898 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.9877 0.9299 0.0013 36 1 4.2276 4.6115 1.4348 37 1 2.9122 3.5003 1.8900 38 1 4.9695 3.1208 3.2554 39 1 4.5466 1.6938 2.2777 40 1 6.9715 2.1693 2.1303 41 1 6.6186 3.8127 1.5451 42 1 7.3749 1.8032 -1.4535 43 1 8.1129 1.4975 0.1371 44 1 11.2090 2.6703 -1.1410 45 1 9.8053 1.6319 -0.7951 46 1 8.8754 2.1423 -3.0365 47 1 10.2792 3.1806 -3.3824 48 1 10.5009 1.4280 -3.1666 49 1 10.7449 5.0533 -1.7291 50 1 9.2442 5.7683 -1.0927 51 1 12.4101 7.5337 1.9024 52 1 4.9636 1.4896 -2.0180 53 1 4.4359 3.0854 -2.6039 54 1 6.1712 2.6989 -2.5154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001441867619.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:36 Heat of formation + Delta-G solvation = -95.604150 kcal Electronic energy + Delta-G solvation = -31986.375013 eV Core-core repulsion = 27956.985709 eV Total energy + Delta-G solvation = -4029.389304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83597 -40.69738 -39.20524 -37.00107 -35.51779 -34.85748 -34.19422 -33.64245 -32.11739 -31.78485 -30.06806 -28.37190 -27.58315 -25.50138 -24.62395 -24.16281 -23.43767 -22.51703 -21.35971 -20.42366 -19.66806 -19.12303 -18.30696 -17.87449 -17.43092 -16.93170 -16.65561 -16.50506 -16.22877 -16.04996 -15.63279 -15.40458 -15.17072 -14.75453 -14.67097 -14.60111 -14.38870 -14.09181 -13.93515 -13.68467 -13.57483 -13.26383 -13.20888 -13.06887 -13.01944 -12.90920 -12.66886 -12.56881 -12.55305 -12.39405 -12.26709 -12.05302 -11.95836 -11.87796 -11.78228 -11.64937 -11.57169 -11.26442 -11.17128 -10.86120 -10.75132 -9.94168 -9.36901 -9.14907 -8.36997 -6.41039 1.28069 1.31773 1.39851 1.78405 1.79925 2.26740 2.34408 2.36379 2.84439 2.97596 3.62245 3.75675 3.80465 3.94744 3.96562 4.08026 4.15239 4.29350 4.34229 4.34657 4.36976 4.44642 4.52230 4.57335 4.61578 4.65649 4.69470 4.76014 4.79267 4.82459 4.89178 4.89448 4.97695 5.01871 5.02841 5.04324 5.06535 5.08994 5.13167 5.16588 5.25010 5.36194 5.39810 5.40698 5.46247 5.62316 5.68748 5.90483 6.00865 6.22171 6.60272 6.75559 6.76677 7.20140 7.43436 7.45727 8.79766 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018313 B = 0.002867 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.562246 B = 9763.749789 C =10358.952549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.502 3.498 4 O -0.597 6.597 5 N -0.697 5.697 6 C 0.168 3.832 7 H 0.068 0.932 8 C -0.129 4.129 9 C -0.098 4.098 10 C 0.038 3.962 11 N -0.487 5.487 12 C 0.040 3.960 13 C 0.467 3.533 14 O -0.584 6.584 15 N -0.600 5.600 16 C 0.097 3.903 17 C -0.160 4.160 18 C 0.226 3.774 19 C -0.529 4.529 20 H 0.029 0.971 21 C 0.011 3.989 22 N -0.945 5.945 23 Si 0.945 3.055 24 H -0.280 1.280 25 H -0.275 1.275 26 H -0.240 1.240 27 C 0.059 3.941 28 H 0.052 0.948 29 C -0.137 4.137 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.419 0.581 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.137 0.863 43 H 0.122 0.878 44 H 0.067 0.933 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.041 0.959 48 H 0.094 0.906 49 H 0.042 0.958 50 H 0.013 0.987 51 H 0.267 0.733 52 H 0.087 0.913 53 H 0.057 0.943 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 -20.355 -8.876 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.291 3.709 4 O -0.478 6.478 5 N -0.349 5.349 6 C 0.062 3.938 7 H 0.086 0.914 8 C -0.168 4.168 9 C -0.136 4.136 10 C -0.090 4.090 11 N -0.210 5.210 12 C -0.092 4.092 13 C 0.255 3.745 14 O -0.466 6.466 15 N -0.331 5.331 16 C -0.025 4.025 17 C -0.218 4.218 18 C 0.103 3.897 19 C -0.567 4.567 20 H 0.047 0.953 21 C -0.187 4.187 22 N -0.585 5.585 23 Si 0.768 3.232 24 H -0.206 1.206 25 H -0.200 1.200 26 H -0.163 1.163 27 C -0.050 4.050 28 H 0.070 0.930 29 C -0.194 4.194 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.154 0.846 43 H 0.139 0.861 44 H 0.086 0.914 45 H 0.119 0.881 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.113 0.887 49 H 0.060 0.940 50 H 0.031 0.969 51 H 0.076 0.924 52 H 0.105 0.895 53 H 0.076 0.924 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.663 -19.581 -8.586 26.504 hybrid contribution 1.207 2.255 0.253 2.570 sum -14.457 -17.326 -8.333 24.054 Atomic orbital electron populations 1.21523 0.93905 1.02420 1.01610 1.21675 0.97780 0.91489 1.06612 1.21545 0.81988 0.92911 0.74456 1.90679 1.56589 1.48429 1.52105 1.45877 1.06871 1.08288 1.73858 1.20678 0.93511 0.84217 0.95417 0.91397 1.21893 0.99482 0.99141 0.96304 1.21415 0.93172 1.01061 0.97938 1.22280 0.98146 0.99242 0.89370 1.62523 1.07559 1.49133 1.01736 1.22590 0.90391 0.91771 1.04400 1.22708 0.81757 0.93441 0.76554 1.90582 1.63209 1.43414 1.49387 1.48244 1.13002 1.08996 1.62854 1.21790 0.96895 0.87320 0.96530 1.22151 1.02865 1.02509 0.94237 1.19210 0.92467 0.82514 0.95473 1.21531 1.32973 1.02197 1.00038 0.95274 1.25822 0.94485 1.00382 0.98046 1.70045 1.36686 1.26047 1.25711 0.85758 0.77755 0.79108 0.80568 1.20562 1.20015 1.16312 1.22048 0.91279 0.97460 0.94198 0.93038 1.21821 1.01734 1.02799 0.93088 0.93916 0.93711 0.89719 0.86342 0.86675 0.74328 0.93326 0.92118 0.91738 0.89612 0.90568 0.95358 0.84583 0.86064 0.91448 0.88100 0.91626 0.94006 0.88720 0.93978 0.96916 0.92362 0.89459 0.92416 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.20 71.98 0.66 -1.20 16 2 C -0.14 -1.52 6.42 29.85 0.19 -1.33 16 3 C 0.50 10.21 7.80 87.66 0.68 10.90 16 4 O -0.60 -18.09 15.64 -3.03 -0.05 -18.14 16 5 N -0.70 -12.62 3.80 -442.29 -1.68 -14.30 16 6 C 0.17 4.13 2.26 45.04 0.10 4.23 16 7 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 8 C -0.13 -3.49 5.67 30.67 0.17 -3.31 16 9 C -0.10 -2.37 5.93 30.64 0.18 -2.18 16 10 C 0.04 1.07 5.00 86.33 0.43 1.50 16 11 N -0.49 -11.32 4.17 -875.67 -3.65 -14.97 16 12 C 0.04 0.92 4.16 85.56 0.36 1.27 16 13 C 0.47 16.94 7.07 87.65 0.62 17.55 16 14 O -0.58 -26.82 11.22 -3.02 -0.03 -26.85 16 15 N -0.60 -22.56 2.46 -826.16 -2.03 -24.59 16 16 C 0.10 2.54 5.96 86.38 0.51 3.06 16 17 C -0.16 -3.07 10.24 71.98 0.74 -2.34 16 18 C 0.23 10.79 4.23 85.63 0.36 11.15 16 19 C -0.53 -30.71 9.94 25.60 0.25 -30.45 16 20 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 21 C 0.01 0.63 5.47 84.66 0.46 1.09 16 22 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 23 Si 0.94 44.80 27.47 68.60 1.88 46.68 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 26 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 27 C 0.06 1.49 1.76 44.94 0.08 1.57 16 28 H 0.05 1.81 5.69 -2.39 -0.01 1.79 16 29 C -0.14 -2.63 8.25 71.98 0.59 -2.04 16 30 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.04 0.74 8.10 -2.39 -0.02 0.72 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.42 5.59 7.94 -92.71 -0.74 4.85 16 36 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.09 1.70 7.73 -2.39 -0.02 1.68 16 40 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 41 H 0.03 1.10 5.68 -2.39 -0.01 1.09 16 42 H 0.14 2.32 5.37 -2.38 -0.01 2.30 16 43 H 0.12 2.38 7.09 -2.39 -0.02 2.36 16 44 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 45 H 0.10 1.99 6.28 -2.38 -0.01 1.97 16 46 H 0.06 1.09 7.42 -2.39 -0.02 1.07 16 47 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 48 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.04 1.88 7.13 -2.39 -0.02 1.86 16 50 H 0.01 0.66 6.85 -2.39 -0.02 0.65 16 51 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 52 H 0.09 1.23 7.63 -2.39 -0.02 1.21 16 53 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 54 H 0.05 1.08 6.65 -2.39 -0.02 1.06 16 Total: -1.00 -81.16 409.89 1.23 -79.93 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.09 Total: 22.18 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.41 Total: 9.46 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -7.06 Total: -113.26 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.08 Total: -44.99 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -81.16 1.23 -79.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441867619.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.679 kcal (2) G-P(sol) polarization free energy of solvation -81.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds