Wall clock time and date at job start Sat Apr 11 2020 05:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47176 * 2 1 4 4 O 1.21279 * 120.00279 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00196 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00207 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.53895 * 34.90067 * 6 5 3 8 8 C 1.53125 * 109.50305 * 274.80314 * 6 5 3 9 9 C 1.53117 * 109.15946 * 297.71768 * 8 6 5 10 10 C 1.53035 * 109.27656 * 302.34062 * 9 8 6 11 11 N 1.46839 * 109.52320 * 59.18338 * 10 9 8 12 12 C 1.46905 * 111.00364 * 174.15553 * 11 10 9 13 13 C 1.50702 * 109.47276 * 288.16505 * 12 11 10 14 14 O 1.21283 * 119.99958 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99903 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99787 * 359.97438 * 15 13 12 17 17 C 1.53001 * 109.46724 * 90.00587 * 16 15 13 18 18 C 1.46497 * 119.99780 * 179.97438 * 15 13 12 19 19 C 1.50705 * 109.47259 * 89.99839 * 18 15 13 20 20 H 1.08001 * 119.99957 * 359.97438 * 19 18 15 21 21 C 1.37874 * 120.00263 * 179.97438 * 19 18 15 22 22 N 1.31515 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47129 * 59.99885 * 23 21 19 25 25 H 1.48500 * 109.46880 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47011 * 299.99905 * 23 21 19 27 27 C 1.46845 * 111.20138 * 298.25534 * 11 10 9 28 28 H 1.09001 * 109.46049 * 301.72868 * 27 11 10 29 29 C 1.53001 * 109.45639 * 181.74882 * 27 11 10 30 30 H 1.09002 * 109.47060 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47153 * 300.00135 * 1 2 3 32 32 H 1.08998 * 109.47331 * 59.99582 * 1 2 3 33 33 H 1.08997 * 109.47081 * 239.99487 * 2 1 3 34 34 H 1.09005 * 109.46989 * 120.00301 * 2 1 3 35 35 H 0.97001 * 119.99245 * 0.02562 * 5 3 2 36 36 H 1.09004 * 109.51682 * 57.62022 * 8 6 5 37 37 H 1.09000 * 109.52074 * 177.80683 * 8 6 5 38 38 H 1.09006 * 109.49761 * 182.40639 * 9 8 6 39 39 H 1.08992 * 109.50795 * 62.28694 * 9 8 6 40 40 H 1.09000 * 109.46570 * 299.16267 * 10 9 8 41 41 H 1.09000 * 109.45782 * 179.19971 * 10 9 8 42 42 H 1.09001 * 109.46608 * 48.16303 * 12 11 10 43 43 H 1.08996 * 109.47114 * 168.16043 * 12 11 10 44 44 H 1.09005 * 109.47173 * 209.99769 * 16 15 13 45 45 H 1.08999 * 109.47666 * 330.00264 * 16 15 13 46 46 H 1.08999 * 109.47312 * 59.99461 * 17 16 15 47 47 H 1.08998 * 109.47214 * 179.97438 * 17 16 15 48 48 H 1.08999 * 109.47450 * 299.99727 * 17 16 15 49 49 H 1.08994 * 109.47027 * 209.99531 * 18 15 13 50 50 H 1.08996 * 109.47348 * 330.00271 * 18 15 13 51 51 H 0.96995 * 120.00553 * 179.97438 * 22 21 19 52 52 H 1.08997 * 109.47637 * 307.42916 * 29 27 11 53 53 H 1.09000 * 109.46643 * 67.42744 * 29 27 11 54 54 H 1.09000 * 109.47186 * 187.42324 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1729 3.6726 0.5888 8 6 3.9028 3.5709 -1.4371 9 6 4.8954 2.7256 -2.2400 10 6 6.2677 2.7807 -1.5650 11 7 6.1603 2.2698 -0.1925 12 6 7.4830 2.1780 0.4401 13 6 8.2554 1.0387 -0.1734 14 8 7.7534 0.3688 -1.0509 15 7 9.5041 0.7643 0.2531 16 6 10.1107 1.5739 1.3127 17 6 9.7853 0.9577 2.6748 18 6 10.2548 -0.3436 -0.3429 19 6 11.0407 0.1609 -1.5257 20 1 10.9861 1.2026 -1.8057 21 6 11.8294 -0.7073 -2.2504 22 7 11.8963 -1.9756 -1.9091 23 14 12.8041 -0.0817 -3.7160 24 1 13.7490 0.9728 -3.2684 25 1 13.5649 -1.2049 -4.3202 26 1 11.8727 0.4839 -4.7249 27 6 5.2486 3.0939 0.6111 28 1 5.6058 4.1237 0.6238 29 6 5.2002 2.5533 2.0417 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.9878 0.9297 0.0005 36 1 2.9138 3.4996 -1.8899 37 1 4.2289 4.6109 -1.4339 38 1 4.9723 3.1196 -3.2535 39 1 4.5486 1.6930 -2.2757 40 1 6.6201 3.8119 -1.5421 41 1 6.9734 2.1684 -2.1264 42 1 8.0257 3.1105 0.2843 43 1 7.3630 2.0018 1.5090 44 1 11.1917 1.6013 1.1753 45 1 9.7129 2.5878 1.2682 46 1 10.1831 -0.0562 2.7193 47 1 10.2370 1.5598 3.4632 48 1 8.7044 0.9302 2.8123 49 1 10.9387 -0.7588 0.3973 50 1 9.5610 -1.1175 -0.6712 51 1 12.4508 -2.5865 -2.4191 52 1 4.9715 1.4879 2.0200 53 1 6.1667 2.7078 2.5213 54 1 4.4280 3.0794 2.6029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001441867626.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:44 Heat of formation + Delta-G solvation = -98.187066 kcal Electronic energy + Delta-G solvation = -31675.435457 eV Core-core repulsion = 27645.934150 eV Total energy + Delta-G solvation = -4029.501307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54431 -40.59230 -39.36768 -36.85590 -35.59186 -34.86633 -34.19874 -33.67046 -32.04450 -31.53260 -29.77263 -28.22197 -27.57529 -25.57210 -24.88574 -24.15994 -23.49719 -22.46010 -21.32146 -20.18564 -19.77881 -18.60096 -18.20212 -17.97409 -17.23389 -16.82201 -16.69633 -16.54978 -16.29323 -15.95591 -15.57465 -15.36362 -15.12094 -14.71759 -14.56368 -14.46135 -14.23966 -14.11491 -13.90391 -13.71744 -13.49520 -13.26194 -13.15296 -13.08123 -12.90234 -12.86897 -12.76719 -12.62511 -12.60149 -12.46831 -12.30515 -12.11682 -12.02141 -11.84774 -11.83117 -11.71609 -11.54184 -11.26710 -10.78168 -10.62706 -10.42443 -9.93800 -9.34517 -9.22882 -8.20337 -6.35036 1.36158 1.39975 1.47154 1.73954 1.96798 2.22843 2.36259 2.43637 2.98353 3.08879 3.61424 3.74326 3.83981 3.92469 3.98011 4.08834 4.16482 4.26014 4.28014 4.33177 4.35728 4.37381 4.41539 4.47222 4.51290 4.67217 4.70394 4.73179 4.82454 4.87390 4.95213 4.98414 5.00389 5.01557 5.02491 5.03850 5.08057 5.10073 5.22441 5.26609 5.28197 5.33938 5.38505 5.43170 5.61196 5.64060 5.89517 5.98957 6.10286 6.17248 6.69073 6.73782 6.91898 7.31817 7.35836 7.63225 8.85987 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002858 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.492586 B = 9794.866652 C =10252.028259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.145 4.145 3 C 0.507 3.493 4 O -0.588 6.588 5 N -0.705 5.705 6 C 0.158 3.842 7 H 0.088 0.912 8 C -0.125 4.125 9 C -0.105 4.105 10 C 0.060 3.940 11 N -0.525 5.525 12 C 0.047 3.953 13 C 0.498 3.502 14 O -0.575 6.575 15 N -0.607 5.607 16 C 0.100 3.900 17 C -0.160 4.160 18 C 0.266 3.734 19 C -0.539 4.539 20 H 0.051 0.949 21 C 0.008 3.992 22 N -0.929 5.929 23 Si 0.963 3.037 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.278 1.278 27 C 0.078 3.922 28 H 0.071 0.929 29 C -0.146 4.146 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.412 0.588 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.131 0.869 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.018 0.982 50 H -0.004 1.004 51 H 0.266 0.734 52 H 0.058 0.942 53 H 0.073 0.927 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 11.476 10.296 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.184 4.184 3 C 0.296 3.704 4 O -0.470 6.470 5 N -0.356 5.356 6 C 0.052 3.948 7 H 0.106 0.894 8 C -0.164 4.164 9 C -0.142 4.142 10 C -0.068 4.068 11 N -0.251 5.251 12 C -0.083 4.083 13 C 0.286 3.714 14 O -0.455 6.455 15 N -0.340 5.340 16 C -0.022 4.022 17 C -0.218 4.218 18 C 0.145 3.855 19 C -0.578 4.578 20 H 0.070 0.930 21 C -0.191 4.191 22 N -0.568 5.568 23 Si 0.788 3.212 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.204 1.204 27 C -0.030 4.030 28 H 0.089 0.911 29 C -0.204 4.204 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.249 0.751 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.149 0.851 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.055 0.945 47 H 0.112 0.888 48 H 0.082 0.918 49 H 0.036 0.964 50 H 0.014 0.986 51 H 0.075 0.925 52 H 0.077 0.923 53 H 0.092 0.908 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.866 11.141 9.791 21.719 hybrid contribution 1.499 0.108 -1.183 1.913 sum -14.367 11.249 8.608 20.175 Atomic orbital electron populations 1.21493 0.93205 1.02357 1.01953 1.21690 0.98383 0.92483 1.05871 1.21250 0.82117 0.92483 0.74597 1.90648 1.56306 1.47852 1.52144 1.46039 1.06760 1.09198 1.73647 1.20969 0.94013 0.83654 0.96131 0.89355 1.21934 0.99038 0.99913 0.95479 1.21421 0.93831 1.00380 0.98616 1.22051 0.98000 0.97437 0.89282 1.61414 1.09233 1.52479 1.01997 1.22083 0.89546 0.95726 1.00991 1.21172 0.81426 0.86180 0.82630 1.90628 1.69494 1.52666 1.32681 1.48278 1.14662 1.33149 1.37897 1.21710 0.99140 0.94848 0.86539 1.22150 1.02249 1.01080 0.96360 1.18606 0.89645 0.85058 0.92212 1.21680 1.26808 0.95360 1.13958 0.93046 1.25821 0.97914 0.94914 1.00421 1.70040 1.40783 1.04298 1.41724 0.85533 0.78524 0.78162 0.78984 1.18550 1.20485 1.20373 1.21958 0.91044 0.96268 0.93741 0.91137 1.21927 1.03025 1.01953 0.93475 0.90169 0.93054 0.93564 0.87929 0.87080 0.75132 0.92548 0.89896 0.91225 0.92659 0.93992 0.92952 0.90515 0.85143 0.91406 0.88389 0.94475 0.88780 0.91832 0.96428 0.98633 0.92492 0.92285 0.90806 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.20 71.98 0.66 -1.53 16 2 C -0.14 -2.37 6.42 29.85 0.19 -2.18 16 3 C 0.51 11.39 7.80 87.65 0.68 12.07 16 4 O -0.59 -17.28 15.64 -3.03 -0.05 -17.32 16 5 N -0.71 -14.48 3.81 -442.28 -1.69 -16.16 16 6 C 0.16 3.09 2.26 45.05 0.10 3.19 16 7 H 0.09 1.81 7.58 -2.39 -0.02 1.79 16 8 C -0.13 -2.57 5.67 30.68 0.17 -2.40 16 9 C -0.10 -2.51 5.93 30.65 0.18 -2.33 16 10 C 0.06 1.61 5.11 86.33 0.44 2.05 16 11 N -0.53 -12.68 3.60 -875.66 -3.15 -15.83 16 12 C 0.05 1.17 3.82 85.56 0.33 1.50 16 13 C 0.50 19.29 7.36 87.66 0.65 19.94 16 14 O -0.58 -28.21 14.42 -3.04 -0.04 -28.25 16 15 N -0.61 -24.47 2.46 -826.16 -2.03 -26.50 16 16 C 0.10 2.84 5.93 86.38 0.51 3.35 16 17 C -0.16 -3.60 10.24 71.98 0.74 -2.86 16 18 C 0.27 14.13 5.16 85.64 0.44 14.57 16 19 C -0.54 -30.72 9.39 25.60 0.24 -30.48 16 20 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 21 C 0.01 0.47 5.46 84.65 0.46 0.93 16 22 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 23 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 C 0.08 1.37 2.15 44.94 0.10 1.46 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 C -0.15 -2.11 8.29 71.98 0.60 -1.52 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 32 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.41 8.70 7.95 -92.71 -0.74 7.96 16 36 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.05 1.52 7.72 -2.39 -0.02 1.50 16 40 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 1.89 6.35 -2.39 -0.02 1.87 16 42 H 0.08 1.66 7.31 -2.39 -0.02 1.65 16 43 H 0.13 2.52 4.59 -2.39 -0.01 2.51 16 44 H 0.07 2.11 8.07 -2.38 -0.02 2.09 16 45 H 0.10 2.07 6.44 -2.39 -0.02 2.05 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 49 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 50 H 0.00 -0.28 7.42 -2.39 -0.02 -0.29 16 51 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 52 H 0.06 0.99 7.65 -2.39 -0.02 0.97 16 53 H 0.07 0.88 6.44 -2.39 -0.02 0.86 16 54 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 Total: -1.00 -76.40 418.94 1.99 -74.41 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.14 Total: 22.96 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.49 Total: 15.77 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -6.58 Total: -114.25 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.09 Total: -45.58 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.40 1.99 -74.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441867626.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.777 kcal (2) G-P(sol) polarization free energy of solvation -76.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds