Wall clock time and date at job start Sat Apr 11 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.52997 * 109.47168 * 120.00424 * 2 1 3 5 5 N 1.46903 * 109.47291 * 278.73098 * 4 2 1 6 6 C 1.47017 * 110.99709 * 56.09142 * 5 4 2 7 7 C 1.53098 * 109.25561 * 182.35200 * 6 5 4 8 8 O 1.43016 * 109.29298 * 303.22197 * 7 6 5 9 9 C 1.43007 * 113.73697 * 58.64836 * 8 7 6 10 10 C 1.47003 * 111.00100 * 179.77684 * 5 4 2 11 11 C 1.50698 * 109.46851 * 240.00409 * 2 1 3 12 12 O 1.21286 * 119.99885 * 240.00207 * 11 2 1 13 13 N 1.34780 * 120.00200 * 59.99733 * 11 2 1 14 14 C 1.46498 * 119.99971 * 180.02562 * 13 11 2 15 15 C 1.52997 * 109.46993 * 180.02562 * 14 13 11 16 16 H 1.09002 * 112.85126 * 316.19710 * 15 14 13 17 17 C 1.53782 * 113.61603 * 87.50404 * 15 14 13 18 18 C 1.53775 * 87.08473 * 139.98135 * 17 15 14 19 19 H 1.09003 * 113.69288 * 89.12430 * 18 17 15 20 20 N 1.46498 * 113.61489 * 220.01864 * 18 17 15 21 21 C 1.36938 * 120.00101 * 252.49164 * 20 18 17 22 22 H 1.07995 * 119.99927 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00171 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00004 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00183 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47457 * 59.99973 * 25 23 21 27 27 H 1.48495 * 109.47228 * 180.02562 * 25 23 21 28 28 H 1.48508 * 109.46829 * 300.00102 * 25 23 21 29 29 C 1.53779 * 87.08057 * 334.56781 * 18 17 15 30 30 H 1.09009 * 109.47047 * 335.93166 * 1 2 3 31 31 H 1.09001 * 109.47536 * 95.92923 * 1 2 3 32 32 H 1.09001 * 109.47203 * 215.93471 * 1 2 3 33 33 H 1.09000 * 109.46630 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47040 * 300.00512 * 3 2 1 35 35 H 1.08999 * 109.47016 * 60.00479 * 3 2 1 36 36 H 1.08997 * 109.47090 * 158.73152 * 4 2 1 37 37 H 1.08997 * 109.47075 * 38.72877 * 4 2 1 38 38 H 1.09000 * 109.47058 * 62.44187 * 6 5 4 39 39 H 1.08999 * 109.54767 * 302.31089 * 6 5 4 40 40 H 1.09000 * 109.50818 * 183.26220 * 7 6 5 41 41 H 1.09003 * 109.50499 * 63.17904 * 7 6 5 42 42 H 1.08999 * 109.50992 * 61.26351 * 9 8 7 43 43 H 1.09004 * 109.50917 * 181.35057 * 9 8 7 44 44 H 1.09000 * 109.50992 * 57.67498 * 10 5 4 45 45 H 1.09003 * 109.54514 * 297.55947 * 10 5 4 46 46 H 0.97003 * 120.00070 * 0.02562 * 13 11 2 47 47 H 1.09001 * 109.47239 * 300.00019 * 14 13 11 48 48 H 1.08995 * 109.47250 * 60.00305 * 14 13 11 49 49 H 1.09008 * 113.61218 * 254.53164 * 17 15 14 50 50 H 1.08996 * 113.61907 * 25.43029 * 17 15 14 51 51 H 0.96999 * 120.00009 * 72.49901 * 20 18 17 52 52 H 0.96998 * 120.00167 * 180.02562 * 24 23 21 53 53 H 1.09006 * 113.61316 * 270.88350 * 29 18 17 54 54 H 1.09005 * 113.61826 * 139.98324 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 2.0050 0.1982 2.3942 6 6 0.6538 0.7430 2.5914 7 6 0.6754 1.7382 3.7545 8 8 1.1732 1.0857 4.9256 9 6 2.4877 0.5447 4.7684 10 6 2.4843 -0.4636 3.6162 11 6 2.0323 -0.7103 -1.2305 12 8 2.7295 -1.6965 -1.1193 13 7 1.7066 -0.2498 -2.4546 14 6 2.1944 -0.9407 -3.6508 15 6 1.6850 -0.2190 -4.9000 16 1 0.6347 0.0632 -4.8270 17 6 2.6010 0.9244 -5.3675 18 6 2.3204 0.4562 -6.8051 19 1 1.4444 0.9236 -7.2549 20 7 3.4976 0.4977 -7.6761 21 6 3.5953 1.4553 -8.6501 22 1 2.8047 2.1802 -8.7759 23 6 4.7110 1.4949 -9.4750 24 7 5.6748 0.6118 -9.3214 25 14 4.8446 2.8016 -10.8032 26 1 4.8128 4.1482 -10.1779 27 1 6.1213 2.6283 -11.5415 28 1 3.7055 2.6669 -11.7465 29 6 2.0405 -0.9354 -6.2135 30 1 -0.3633 0.9384 0.4191 31 1 -0.3634 -0.1062 -1.0221 32 1 -0.3634 -0.8321 0.6031 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.0640 -1.0558 1.0829 37 1 1.4053 -1.5830 1.4557 38 1 -0.0357 -0.0696 2.8204 39 1 0.3294 1.2512 1.6833 40 1 -0.3352 2.1011 3.9418 41 1 1.3229 2.5782 3.5028 42 1 3.1883 1.3494 4.5457 43 1 2.7882 0.0449 5.6893 44 1 3.4960 -0.8361 3.4556 45 1 1.8249 -1.2958 3.8628 46 1 1.1492 0.5391 -2.5436 47 1 3.2844 -0.9412 -3.6510 48 1 1.8307 -1.9682 -3.6507 49 1 2.2077 1.9169 -5.1469 50 1 3.6407 0.8030 -5.0638 51 1 4.2078 -0.1532 -7.5629 52 1 6.4545 0.6398 -9.8976 53 1 2.9272 -1.5654 -6.1411 54 1 1.1949 -1.4445 -6.6759 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479302405.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:49 Heat of formation + Delta-G solvation = -60.921828 kcal Electronic energy + Delta-G solvation = -30153.300447 eV Core-core repulsion = 26125.415081 eV Total energy + Delta-G solvation = -4027.885365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71000 -40.47873 -39.81565 -37.77043 -36.09321 -35.22615 -34.55023 -32.20643 -32.02086 -29.45496 -28.62184 -28.28676 -26.44920 -26.02658 -25.67299 -24.73484 -23.43210 -22.34441 -21.32838 -20.84738 -20.05689 -19.00750 -18.05217 -17.47636 -17.20527 -17.02651 -16.68057 -16.57218 -16.22934 -16.11311 -15.85171 -15.79183 -15.45577 -15.09086 -15.04904 -14.70704 -14.54120 -14.39621 -13.78368 -13.64870 -13.42080 -13.23244 -13.04644 -12.98960 -12.94613 -12.90060 -12.69198 -12.61401 -12.28882 -12.24804 -12.15939 -12.06821 -12.01023 -11.70064 -11.57028 -11.54204 -11.39544 -11.08301 -10.82222 -10.73132 -10.48003 -10.07021 -9.41255 -8.97044 -7.93760 -5.22174 1.47600 1.50665 1.56756 1.61191 2.08771 2.57402 2.78358 2.99292 3.37846 3.50414 3.64751 3.75626 3.76790 3.86125 3.93409 3.94773 4.03503 4.12563 4.21998 4.26361 4.27642 4.34327 4.36917 4.43826 4.51060 4.54123 4.58024 4.69534 4.71245 4.74118 4.77500 4.81720 4.87236 4.93432 4.95032 4.98295 4.99485 5.01381 5.05912 5.07462 5.23312 5.29736 5.37219 5.41843 5.44420 5.53776 5.74336 5.88249 5.95837 6.20535 6.28259 6.55405 7.23614 7.33663 8.12432 8.33912 9.29539 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.001751 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.559048 B =15991.266177 C =16277.026257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.073 4.073 3 C -0.129 4.129 4 C 0.082 3.918 5 N -0.532 5.532 6 C -0.005 4.005 7 C 0.058 3.942 8 O -0.407 6.407 9 C 0.066 3.934 10 C 0.016 3.984 11 C 0.518 3.482 12 O -0.590 6.590 13 N -0.709 5.709 14 C 0.138 3.862 15 C -0.093 4.093 16 H 0.124 0.876 17 C -0.152 4.152 18 C 0.143 3.857 19 H 0.082 0.918 20 N -0.730 5.730 21 C -0.243 4.243 22 H 0.080 0.920 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.974 3.026 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.276 1.276 29 C -0.138 4.138 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.415 0.585 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.053 0.947 51 H 0.371 0.629 52 H 0.250 0.750 53 H 0.064 0.936 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.832 1.854 28.658 32.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C -0.186 4.186 4 C -0.046 4.046 5 N -0.257 5.257 6 C -0.132 4.132 7 C -0.019 4.019 8 O -0.326 6.326 9 C -0.011 4.011 10 C -0.112 4.112 11 C 0.305 3.695 12 O -0.470 6.470 13 N -0.360 5.360 14 C 0.014 3.986 15 C -0.112 4.112 16 H 0.142 0.858 17 C -0.193 4.193 18 C 0.033 3.967 19 H 0.100 0.900 20 N -0.368 5.368 21 C -0.375 4.375 22 H 0.098 0.902 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.803 3.197 26 H -0.203 1.203 27 H -0.225 1.225 28 H -0.202 1.202 29 C -0.177 4.177 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.054 0.946 46 H 0.253 0.747 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.072 0.928 51 H 0.203 0.797 52 H 0.058 0.942 53 H 0.083 0.917 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.172 1.687 28.649 32.462 hybrid contribution 0.599 -0.500 -1.098 1.347 sum -14.573 1.187 27.551 31.191 Atomic orbital electron populations 1.22368 0.90445 1.04140 1.03712 1.20732 0.98456 0.97657 0.90841 1.21876 1.01029 0.91759 1.03940 1.21898 1.01133 0.92511 0.89050 1.62285 1.24422 1.35432 1.03585 1.23516 0.89226 0.98933 1.01568 1.22882 1.00968 0.94116 0.83904 1.87956 1.32751 1.74927 1.36969 1.22721 0.84291 0.95914 0.98136 1.22797 1.01463 0.96425 0.90505 1.20998 0.79114 0.83710 0.85642 1.90684 1.40093 1.28749 1.87474 1.45861 1.53265 1.32147 1.04759 1.21209 0.97984 0.96008 0.83385 1.22464 1.00703 0.96375 0.91705 0.85834 1.23711 0.98443 0.98295 0.98831 1.21970 0.89848 0.95721 0.89129 0.89987 1.42635 1.20715 1.35759 1.37655 1.19708 1.02606 1.07113 1.08030 0.90209 1.25615 0.97186 1.01665 1.02826 1.69821 1.10215 1.39432 1.42865 0.85199 0.76485 0.78951 0.79060 1.20309 1.22529 1.20236 1.23336 1.01251 0.97387 0.95763 0.88139 0.91117 0.92084 0.93851 0.91056 0.88710 0.91676 0.94973 0.94422 0.85922 0.86761 0.91877 0.92009 0.87142 0.89429 0.94558 0.74725 0.93867 0.91827 0.91199 0.92837 0.79739 0.94156 0.91731 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.70 71.98 0.55 -0.91 16 2 C -0.07 -1.14 0.61 -52.93 -0.03 -1.18 16 3 C -0.13 -1.70 7.62 71.98 0.55 -1.15 16 4 C 0.08 1.51 4.10 86.30 0.35 1.87 16 5 N -0.53 -7.86 3.83 -895.23 -3.43 -11.28 16 6 C -0.01 -0.06 3.73 86.31 0.32 0.26 16 7 C 0.06 0.62 7.01 72.01 0.50 1.12 16 8 O -0.41 -6.35 10.83 -148.98 -1.61 -7.96 16 9 C 0.07 0.83 7.01 72.02 0.50 1.34 16 10 C 0.02 0.23 5.67 86.32 0.49 0.72 16 11 C 0.52 11.99 6.38 87.66 0.56 12.55 16 12 O -0.59 -19.34 15.57 -3.05 -0.05 -19.39 16 13 N -0.71 -13.85 5.06 -463.06 -2.34 -16.19 16 14 C 0.14 3.37 5.51 86.38 0.48 3.85 16 15 C -0.09 -2.17 3.75 -10.27 -0.04 -2.21 16 16 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.15 -4.68 7.43 31.12 0.23 -4.45 16 18 C 0.14 5.27 4.48 45.52 0.20 5.48 16 19 H 0.08 2.91 8.10 -2.39 -0.02 2.89 16 20 N -0.73 -36.57 5.40 -320.46 -1.73 -38.30 16 21 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 24 N -0.97 -60.21 13.06 21.65 0.28 -59.92 16 25 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 29 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 30 H 0.10 0.50 5.58 -2.38 -0.01 0.49 16 31 H 0.07 0.63 7.09 -2.39 -0.02 0.62 16 32 H 0.06 0.66 7.24 -2.39 -0.02 0.65 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.73 7.56 -2.39 -0.02 0.71 16 35 H 0.09 0.99 5.25 -2.39 -0.01 0.97 16 36 H 0.06 1.56 7.29 -2.39 -0.02 1.54 16 37 H 0.03 0.63 7.54 -2.39 -0.02 0.61 16 38 H 0.04 0.47 8.07 -2.39 -0.02 0.45 16 39 H 0.12 0.91 2.84 -2.39 -0.01 0.90 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.42 5.51 7.47 -92.71 -0.69 4.81 16 47 H 0.04 1.31 7.84 -2.39 -0.02 1.29 16 48 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 50 H 0.05 1.93 7.89 -2.39 -0.02 1.92 16 51 H 0.37 20.32 7.92 -92.71 -0.73 19.58 16 52 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 53 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 54 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -73.15 409.94 -1.17 -74.32 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.53 Total: 34.03 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 6.21 Total: -3.31 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -7.22 Total: -125.71 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -1.66 Total: -27.34 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.15 -1.17 -74.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479302405.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.396 kcal (2) G-P(sol) polarization free energy of solvation -73.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds